Difference between revisions of "Os03g0766000"

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Please input one-sentence summary here.
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The rice '''Os03g0766000''' was reported as '''CysR10''' in 2015 <ref name="ref1" /> by researchers from the Japan.  
 
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<br>
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''Os03g0766000 <=> CysR10'''
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<br>
 
===Function===
 
===Function===
Please input function information here.
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*CysR10 is required for tight packaging of the proteins into a compact spherical structure.
 
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<br>
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===Related gene===
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*CysR10 and CysP13 were asymmetrically distributed within the PBs, with the former concentrated at the electron-dense center core region and the latter distributed mainly to the electron-lucent peripheral region.
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<br>
 
===Expression===
 
===Expression===
Please input expression information here.
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*Temporal expression data showed that the formation of prolamin-containing PB-I in the wild-type endosperm was initiated by the accumulation of CysR10 to form the center core. In mutants deficient for cysteine-rich prolamins, the typical PB-I structures containing the electron-dense center core were not observed, and instead were replaced by irregularly shaped, electron-lucent, hypertrophied PBs. Similar, deformed PBs were observed in a CysR10 RNA interference plant line.
 
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<br>
===Evolution===
 
Please input evolution information here.
 
 
 
You can also add sub-section(s) at will.
 
 
 
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Hakozaki, Fukuoka, 812-8581 Japan
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*Organization for General Education, Yamaguchi Prefectural University, Sakurabatake, Yamaguchi, 753-8502, Japan
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*Division of Plant Sciences, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan
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*Institute of Biological Chemistry, Washington State University, Pullman, WA 99164-6340, USA
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<br>
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==References==
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<references>
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<ref name="ref1">
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Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice
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</ref>
  
==References==
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</references>
Please input cited references here.
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<br>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
GeneName = Os03g0766000|
 
Description = Conserved hypothetical protein|
 
Version = NM_001057914.2 GI:297601741 GeneID:4334226|
 
Length = 6257 bp|
 
Definition = Oryza sativa Japonica Group Os03g0766000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
 
AP = Chromosome 3:32576701..32582957|
 
CDS = 32577029..32577149,32577874..32577998,32578190..32578305,32578900..32579014,32579100..32579159<br>,32579722..32579791,32582771..32582955|
 
GCID = <gbrowseImage1>
 
name=NC_008396:32576701..32582957
 
source=RiceChromosome03
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008396:32576701..32582957
 
source=RiceChromosome03
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>tcaagcagtccagcccaagtcgtcgcgcacctcgggcgatccgacctcgccgttgcttgctcagacgccggagacgacgacgacggcggcggcggcggcggggacgagatgacggtgttccacttcctcaactgcgccgccctcaccttcggcccccacgtcgtctactactcggccaccccgctgtcagagtatgacacaattggcacttgtgtaaaagcggctgttgtttatcttggaacagcactagtaaagcttgtttgcttagcgacattgctcaaagtacctgagaatgatagctttgatccttatcaggaattgatgaaaatctttattgggtttatagatgttgctggtctttattttgctttgacacagttgactcatagaaacatctcccagaatcacaagtttcaggcagttggtcttggttgggcttttgctgactcagttctgcaccgtctggcgcctctctggattggtgcaagaggacttgaatttacgtgggagtacatttttcaaggacttgaagcaaatgccaatcttgttatgacgctgtcccttgctgctttaggatccttgatgtggctgaggaaaaacaaacctaggactttggtgccaataatttatgcatgtgctttgcttctggcaacaatgccatctatcaccagttacttgaggagatcattagagtggcagactccaaaggtggttggcttcgagctgttctcctcactggtcatggctttcatcagctggcagctgttctcagcttgtcagagaccaatgtaa</cdnaseq>|
 
AA = <aaseq>SSSPAQVVAHLGRSDLAVACSDAGDDDDGGGGGGDEMTVFHFLN                    CAALTFGPHVVYYSATPLSEYDTIGTCVKAAVVYLGTALVKLVCLATLLKVPENDSFD                    PYQELMKIFIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWI                    GARGLEFTWEYIFQGLEANANLVMTLSLAALGSLMWLRKNKPRTLVPIIYACALLLAT                    MPSITSYLRRSLEWQTPKVVGFELFSSLVMAFISWQLFSACQRPM</aaseq>|
 
DNA = <dnaseqindica>5809..5929#4960..5084#4653..4768#3944..4058#3799..3858#3167..3236#3..187#actcaagcagtccagcccaagtcgtcgcgcacctcgggcgatccgacctcgccgttgcttgctcagacgccggagacgacgacgacggcggcggcggcggcggggacgagatgacggtgttccacttcctcaactgcgccgccctcaccttcggcccccacgtcgtctactactcggccaccccgctgtatactccctctcccccccccccctccatctccccttgcgccgcgagatccgtatcacgaacgtgctagatctgcttgtagtgaacggtctggacagagattcgtcgcgtcgtcagcggaaggaggtgcttgaatccctgatgctgccggttctctgtgtgtttttggcttgtgagatggggtttagtcagtgcaatttcagtggattttgctcaactcggttggattggcacgagattggttccgcgtgtgaccgtttgttggagaacatgaaatcgcgttgctcgttctggtttggatgctctgttttctgaactaggttgctcgaattgaatctgattggtttatgtctacctccgagtatcaagtaagttcagatgagcggttagctcgttttcagagctagacgggatcacgatctgggaatacaatttttatgaggcaaatgcagcaaatataaagtgatctaactaatgccacttgatattatgatgaacatgttgttgtgaaactggaaaatgcatgccaaattgccaaccatatacatctcattagtagagtaacttcgtgacagtgaaagaaaacttcattctagctgaggggagatcacattgaaggtattcgtgatataatatgttagcaagataagtagctaggatggtttattcatagcacattggtacctggcagcatgtcagatagatattttctatttcagcaatatattgatcttaccttgtgcaacagttttctccatccaagttcagtgaaaatcatttgtccttgaacttatctactcaagcgatgaacaatactcatacacatgagcatatgaatcagttctatcttctatgaagccttaaccctagatttatcacaatctagtcatctagaccggcagaccacattgaactcaattgcaatttgtgagttgttgtatggcttcggaatggggtcgaatctttcttcaatccaggatggaaattttgagatctatacatcacgtttggtacatctctactactctagtactaaaaacatgaagattctgaacatggacattgcatagttctccatcccaattcaccctgcagtgatcgctgcactggataattataatatcagttaaaattgaaaataatgcaacttcatacttgcatggtgtcagtagtgcctgcctaagaaatgtgtcttgtcataatatgattacatgaaatatgtttacttcctcgtttctctttatttgtaagataaagaactagatatgtggaaagtaggatagcaaagagtatggccaaactctaatctttgctttattttttgggatggacccaaaatttgtttctcctttacttctttccctttacaacaatgttctttacttccaattcttattaacaaaactccaaatacatgccaaactgcatatgtatgtatgctattaaggcacatttacaaagctccaagtttacctactcaatcattcacatatggcgatgactcaaactcttaattgttatctgtgtaagctgtgacttgtgtaacacattctacaagtcccatacgaattctgttcacaaaagtttctttgtccagctcataatttacaaaactgcaaaatgccaaagcaatctggcacaaccttatcatcatattttctttccacgcattaaagcactggcagaattatctttgtgtagatattccaaaagtattggttgaataaatgtccaaataaattccatgcctcatgatttccagcttatgtggcctccactaggtggttttgcaaaggccaaactctttcctggcttacacagctaccagcatgtataaataggcccctaggcaaccattattccatcatcctcaacaatattgtctacaccatctggaatcttgtttaacactagtattgtagaatcagcaatggcagcatacaccagcaagatctttgccctgtttgccttaattgctctttctgcaagtgccactactgcaatcaccactatgcagtatttcccaccaacattagccatgggcaccatggatccgtgtaggcagtacatgatgcaaacgttgggcatgggtagctccacagccatgttcatgtcgcagccaatggcgctcctgcagcagcaatgttgcatgcagctacaaggcatgatgcctcagtgccactgtggcaccagttgccagatgatgcagagcatgcaacaagttatttgtgctggactcgggcagcagcagatgatgaagatggcgatgcagatgccatacatgtgcaacatggcccctgtcaacttccaactctcttcctgtggttgttgttgatcaaacgttggttacatgtactctagtaataaggtgttgcatactatcgtgtgcaaacactagaaataagaaccattgaataaaatatcaatcattttcagacttgcaaatattgggtatttggatttctgtcccatgtccctcttgaaagccatgctgtacatgttggagttcccccttggacccaacctactccatgctcccatgttgatcttaaattccctgttcccccagagcatgtaaattttcttatgctaatcagagcaagctcgatgtctcattaacatatccctatttgatcaatgttgtggttgtttcaaaatgtattggtgataagtggtaacagtgtacttctggcataatggataataagtggcggaggtttgtgaagataagagttggaaacagagctgctgtgtatgttctaatgacagagagtttttggatggtcacatagatcttggccttttacttttgatggagggttgcagacgatcattgatgaatggagggctttgtttttaagaatcttattagtgggtagtggttactagttagatgtctatcaatctatagataaaaataatgttgtatatcaaaggatttttgttcttcgctttcttatgcccagtcattttctgcaggtcagagtatgacacaattggcacttgtgtaaaagcggctgttgtttatcttggaacagcactagtaaaggtcagtagctagaaatatgtccttgctgtaatataaattgataacatttggtaagtgccaagcttgctaggctcaaatgatgtgttcctagttgtttgatcatgtgcgcttgtgatctacttttcttgattcagaaagtttcacatgtttggcatagccattagataccattttcttatgtggaatagtggtatatttctgtaacataccagttttaagggtcatggaacacttattgcatatatgttcatctttgattgttgttgtgatattccttaattagttaaacaaaggtatcaattgcatatatatcattttgcatggtatggaccagttatcttcccatctatgcagtttttattatatggatttaattttaaactcatccaagtttgtcatcctgattcttttcgactttgcattttttttaaaatgttcttgtaattttacctactttctgttttaattgtttcacatgcttcttaaatatatgttcttatcactgttatttcttcattcaaataaaggagattatactaaccttgacaaatttaactgacagcttgtttgcttagcgacattgctcaaagtacctgagaatgatagctttgatccttatcaggtgcattttctgttttctttagcaaaacctaattgtgtttaacatgttggcgtttatctaatttgcatgttatctccctttgcaggaattgatgaaaatctttattgggtttatagatgttgctggtctttattttgctttgacacagttgactcatagaaacatctcccagaatcacaagtttcaggcagttggtcttggtgagtgttccctccattataaacaataattcgtatttttagtggccacaaggattaaaggcatgaaagtgaggaaccaagagagagaggagaaaagtatccctgctatacaggagagatacacagtgataggatcaataaatttgcatgtgttcttatatttcacaagaaatttgaggaaactatatgtattataaaaacaaacagggtaaggacattttgttatcactttatgatctaatgcctttaactgaagttaaacctgccaagttatcgtgctgatccatggtgacatctttccttatctgatttttaatctctgttctagtgttaagattcatctgccttacttcacattcgaattacttacaatttactgtgcacttctttttgtagacaagaggaattcctcatgtcattcttatgtatgcattgtcttgttactatattgtcccaattttttagttgcatggagtttgttatccatgctcgtggtttcggactgttacaattgaatggacattcacagagtttttattgtcctgtccactatctgactatcactgatacagtggatatttttgagggtttcaggttgggcttttgctgactcagttctgcaccgtctggcgcctctctggattggtgcaagaggacttgaatttacgtgggagtacatttttcaaggacttgaagcaaatgccaatcttgtatgttttatcaatataatgttaaattgtgaacattacaatatgccatattcctagtttacaaagagagcaacttcctgatgatttggcttccggtgattactagggatagtggttgacaaaatattttccttgtatgtatttcacttataccttattatcccagaaggcttacttttatgtttctgcaggttatgacgctgtcccttgctgctttaggatccttgatgtggctgaggaaaaacaaacctaggactttggtgccaataatttatgcatgtgctttgcttctggcaacaatgccatctatcaccaggttactccttttttatcagctcgatcatgtgtttatgttcttctagaaaaatgtcctgaaacacaacgtttgactacattgaaacacaacgttccatacttccatggttcctccagcatatgtgtgtcaatctagagattttcgattaatgccccttctaaccttaacatctaatcagcaagaactagatatccagcttataatatttctgacagatcattttttcagttccagttttgggtaaccctcattcttcatcatttcttaatttggcaatctgaaacctccttttatcttgcatacaattattgcctccaagtttctattctgttctaaatctaatgccagtttagtactcttgtatggaatattttggtctactcgtctcctcttttactctttgtgaatgtggacgcttgagtaagcccaaaggagaacttcgataaagcatgcaaactaagttaatgttttctggcagatggctataccaatggtgattgagtagtatgtctctagtttgtgatatttatttattgcttacgaaggctaagctaggactgattcgtctggacttatgtttcttagatatgtgctataaccagagtattttgtttgttcattactatgtttcattcgtttagttgtttaggttctgtccttgcaggggtcatgtttctccaaattcattaattttgttttcttcttcactgtgctaaacatgcagttacttgaggagatcattagagtggcagactccaaaggtggttggcttcgagctgttctcctcactggtcatggctttcatcagctggcagctgttctcagcttgtcagagaccaatgtaaggaatgagtttgcaaattgccggagattcacgctcctgagatggctcctgttgtacttccacagaattaggatgcgccttttcagccttgacactatcttttctgggggttcgatcatagaacttattatttagaatcctttttctgtaagttttagtggagaaacacatgctccagtgagttgccattgttaacagctcttataggcattgaactaaaagtatattttgcccctgctgtgcttcttctgtcaaccgcatggcatcatctaaaatgaaagcctataacattcagttttgtcatcagtttatgggaaagtgagtacact</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057914.2 RefSeq:Os03g0766000]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 3]]
 
[[Category:Chromosome 3]]
 

Latest revision as of 11:41, 4 November 2016

The rice Os03g0766000 was reported as CysR10 in 2015 [1] by researchers from the Japan.

Annotated Information

Gene Symbol

  • Os03g0766000 <=> CysR10


Function

  • CysR10 is required for tight packaging of the proteins into a compact spherical structure.


Related gene

  • CysR10 and CysP13 were asymmetrically distributed within the PBs, with the former concentrated at the electron-dense center core region and the latter distributed mainly to the electron-lucent peripheral region.


Expression

  • Temporal expression data showed that the formation of prolamin-containing PB-I in the wild-type endosperm was initiated by the accumulation of CysR10 to form the center core. In mutants deficient for cysteine-rich prolamins, the typical PB-I structures containing the electron-dense center core were not observed, and instead were replaced by irregularly shaped, electron-lucent, hypertrophied PBs. Similar, deformed PBs were observed in a CysR10 RNA interference plant line.


Labs working on this gene

  • Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Hakozaki, Fukuoka, 812-8581 Japan
  • Organization for General Education, Yamaguchi Prefectural University, Sakurabatake, Yamaguchi, 753-8502, Japan
  • Division of Plant Sciences, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan
  • Institute of Biological Chemistry, Washington State University, Pullman, WA 99164-6340, USA


References

  1. Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice


Structured Information