|
|
| (4 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice '''Os04g0180400''' was reported as '''CYP99A2''' in 2011 <ref name="ref1" /> by researchers from the USA. |
| − | | + | <br> |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''Os04g0180400 <=> CYP99A2''' |
| | + | <br> |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | *'''CYP99A2''' does not exhibit significant activity with diterpene substrates, CYP99A3 catalyzes consecutive oxidations of the C19 methyl group of the momilactone precursor syn-pimara-7,15-diene to form, sequentially, syn-pimaradien-19-ol, syn-pimaradien-19-al, and syn-pimaradien-19-oic acid. |
| − | | + | <br> |
| − | ===Expression===
| |
| − | Please input expression information here.
| |
| − | | |
| − | ===Evolution===
| |
| − | Please input evolution information here.
| |
| − | | |
| − | You can also add sub-section(s) at will.
| |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA 50011, USA |
| | + | <br> |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | <ref name="ref1"> |
| | + | CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice |
| | + | </ref> |
| | | | |
| | + | </references> |
| | + | <br> |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | GeneName = Os04g0180400|
| |
| − | Description = Similar to Cytochrome P450 CYP99A1 (EC 1.14.-.-) (Fragment)|
| |
| − | Version = NM_001058712.1 GI:115457153 GeneID:4335096|
| |
| − | Length = 1839 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os04g0180400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| |
| − | AP = Chromosome 4:5477244..5479082|
| |
| − | CDS = 5477307..5478200,5478291..5478920|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008397:5477244..5479082
| |
| − | source=RiceChromosome04
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008397:5477244..5479082
| |
| − | source=RiceChromosome04
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggagataaactcggcagccaccctcaccctcgtctctctcctcaccctccccattcttctggcgttgctgacccgcaagtcgtcgtcaaagaagaggaggcctccagggccatggaacctccccttggtcggcggcctcctccacctcctccggtcgcatccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccggatggggcagatcgacacggtcgtcgtctcatcgccggcggcggcgcaggaggtgctccgcgacaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacgacaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctctgcacggtggagctcctcagcaccaaggtggtgcggcagctcgcgccggtcaggaatgacgagacgctgaccctcgtcaggaacatcaaggccgcctcctccggccatggcggcggcggcggcaagaagccggtcaccctcgccaggctgctcacgacgtgcacgaacacgatcaccgccaaggcggcgttcgggcaggcgtgcggcgtcgagctccaggagcagttcttgacggctctggacgtcgggctcaagttcagcggcggattctgcttcggcgacctcttcccgtcgctgcggttcatcgacgccatgaccgggctgaggagccgcctgtggcgagcacgcgggcagctggactccgtcttcgacaagatcatcgctcagtgcgaggagcatcagggtgattcccttgtcaacgtccttctcaggatcagagatcagggcgacctcgaattccccttcggcacaacgaacatcaaggcaattatactggatatgttcacgggagggacagagacgacgtcgtcggccgcggagtgggtcatgtcggagctcatgaggaaccctgaggtaatggccaaggtacaggccgaggtgcggcgagtgttcgacaacaagagcccacaagaccatgagggcctgattgacaacctacgctacatgaagatggtgatcaaggagactatgaggttgaatccagtgttgccgctgctgatgccccatctctgccgggagacctgcgacattggtggttatgaggtcgtggaggggaccagggtggtgatcaattcgtgggcgatggcgaggagccccgagtactgggatgacgcggaggagtttaagccagagaggtttgaggatggcatggcagactacaaaggctcccgttttgagtacttgccgtttggaaccgggaggaggagatgccctggtgatacatttggtatggtcttgttggagctcatcgtggcacgccttctctactacttcgattggagcctccctgccggaatgcagccggatgatgttgacatggacttcgtcgtcaccgccacaactaggagaaagaaccatcttcagctagtggcgtcgccatataagttggctcctatccaaatctga</cdnaseq>|
| |
| − | AA = <aaseq>MEINSAATLTLVSLLTLPILLALLTRKSSSKKRRPPGPWNLPLV GGLLHLLRSHPQVALRELASKYGPVMFLRMGQIDTVVVSSPAAAQEVLRDKDVMFASR PSLLVSEIFCYDNLDVGFAPYGAYWRMLRKLCTVELLSTKVVRQLAPVRNDETLTLVR NIKAASSGHGGGGGKKPVTLARLLTTCTNTITAKAAFGQACGVELQEQFLTALDVGLK FSGGFCFGDLFPSLRFIDAMTGLRSRLWRARGQLDSVFDKIIAQCEEHQGDSLVNVLL RIRDQGDLEFPFGTTNIKAIILDMFTGGTETTSSAAEWVMSELMRNPEVMAKVQAEVR RVFDNKSPQDHEGLIDNLRYMKMVIKETMRLNPVLPLLMPHLCRETCDIGGYEVVEGT RVVINSWAMARSPEYWDDAEEFKPERFEDGMADYKGSRFEYLPFGTGRRRCPGDTFGM VLLELIVARLLYYFDWSLPAGMQPDDVDMDFVVTATTRRKNHLQLVASPYKLAPIQI</aaseq>|
| |
| − | DNA = <dnaseqindica>64..957#1048..1677#gccaagcaaaactgccaagtaaacctactcaccaataatccatcctcgaatcctcgatttatcatggagataaactcggcagccaccctcaccctcgtctctctcctcaccctccccattcttctggcgttgctgacccgcaagtcgtcgtcaaagaagaggaggcctccagggccatggaacctccccttggtcggcggcctcctccacctcctccggtcgcatccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccggatggggcagatcgacacggtcgtcgtctcatcgccggcggcggcgcaggaggtgctccgcgacaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacgacaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctctgcacggtggagctcctcagcaccaaggtggtgcggcagctcgcgccggtcaggaatgacgagacgctgaccctcgtcaggaacatcaaggccgcctcctccggccatggcggcggcggcggcaagaagccggtcaccctcgccaggctgctcacgacgtgcacgaacacgatcaccgccaaggcggcgttcgggcaggcgtgcggcgtcgagctccaggagcagttcttgacggctctggacgtcgggctcaagttcagcggcggattctgcttcggcgacctcttcccgtcgctgcggttcatcgacgccatgaccgggctgaggagccgcctgtggcgagcacgcgggcagctggactccgtcttcgacaagatcatcgctcagtgcgaggagcatcagggtgattcccttgtcaacgtccttctcaggatcagagatcagggcgacctcgaattccccttcggcacaacgaacatcaaggcaattatactggtaataatttatttactggtgaatatatagcactaattaagatgttattttttctacattgttgttcatgtagtcgatttcattgtgcaggatatgttcacgggagggacagagacgacgtcgtcggccgcggagtgggtcatgtcggagctcatgaggaaccctgaggtaatggccaaggtacaggccgaggtgcggcgagtgttcgacaacaagagcccacaagaccatgagggcctgattgacaacctacgctacatgaagatggtgatcaaggagactatgaggttgaatccagtgttgccgctgctgatgccccatctctgccgggagacctgcgacattggtggttatgaggtcgtggaggggaccagggtggtgatcaattcgtgggcgatggcgaggagccccgagtactgggatgacgcggaggagtttaagccagagaggtttgaggatggcatggcagactacaaaggctcccgttttgagtacttgccgtttggaaccgggaggaggagatgccctggtgatacatttggtatggtcttgttggagctcatcgtggcacgccttctctactacttcgattggagcctccctgccggaatgcagccggatgatgttgacatggacttcgtcgtcaccgccacaactaggagaaagaaccatcttcagctagtggcgtcgccatataagttggctcctatccaaatctgatggatatacggctcctacccaaagctgatggatgtatcagtgtgtttgttcttttcttatcataggtgtatttgttattcgcgtgtttgtgtaccttgtaagggtgcacgtaatgtttgtccccggataatggacaaacaaataataattgtgaacaatatc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058712.1 RefSeq:Os04g0180400]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 4]]
| |
| − | [[Category:Chromosome 4]]
| |
