Difference between revisions of "Os04g0531100"

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(Created page with "{{JaponicaGene| GeneName = Os04g0531100| Description = C2 calcium/lipid-binding region, CaLB domain containing protein| Version = NM_001059929.1 GI:115459587 GeneID:4336487...")
 
(Annotated Information)
 
(5 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''Os04g0531100''' was reported as ''' OsPBP1''' in 2008 <ref name="ref1" /> by researchers from the China.
GeneName = Os04g0531100|
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<br>
Description = C2 calcium/lipid-binding region, CaLB domain containing protein|
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==Annotated Information==
Version = NM_001059929.1 GI:115459587 GeneID:4336487|
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===Gene Symbol===
Length = 2275 bp|
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*'''Os04g0531100 <=> OsPBP1'''
Definition = Oryza sativa Japonica Group Os04g0531100, complete gene.|
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<br>
Source = Oryza sativa Japonica Group
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===Function===
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*OsPBP1 is a novel functional C2-domain phospholipids-binding protein that is required for pollen fertility likely by regulating Ca21 and phospholipid signaling pathways.
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*OsPBP1 is a single copy gene and preferentially expressed in pistil and pollen but downregulated by pollination.  
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*OsPBP1 had a calcium concentration-dependent phospholipid-binding activity and was localized mainly in cytoplasm and nucleus, but translocated onto the plasma membrane in response to an intracellular Ca21 increase.
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*OsPBP1 protein was localized in a region peripheral to pollen wall and vesicles of elongating pollen tube, and its repressed expression reduced substantially this association and led to alteration of microfilament polymerization during pollen germination.  
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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===Mutant===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*Pollen grains of antisense OsPBP1 transgenic lines were largely nonviable, germinated poorly in vitro and of low fertility
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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<br>
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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==Labs working on this gene==
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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*Institute of Genetics and Developmental Biology, Chinese Academy of Sciences and National Centre for Plant Gene Research, Beijing 100190, China
AP = Chromosome 4:26957513..26959787|
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*Graduate School of Chinese Academy of Sciences, Beijing 100049, China
CDS = 26957603..26957669,26957848..26957913,26958556..26958682,26958977..26959091,26959493..26959552<br>|
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<br>
GCID = <gbrowseImage1>
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==References==
name=NC_008397:26957513..26959787
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<references>
source=RiceChromosome04
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<ref name="ref1">
preset=GeneLocation
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Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice
</gbrowseImage1>|
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</ref>
GSID = <gbrowseImage2>
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name=NC_008397:26957513..26959787
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</references>
source=RiceChromosome04
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<br>
preset=GeneLocation
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</gbrowseImage2>|
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==Structured Information==
CDNA = <cdnaseq>atggtgcaggggacgctcgaggtgctgctcgtcggagccaagggcctcgagaacaccgactacctgtgcaacatggacccgtacgcggttctcaaatgccgctcgcaggagcagaagagcagcgttgcgtcaggtaaaggatctgaccctgaatggaacgaaacctttatgttcagcgtcactcacaacgctacagagctcatcatcaagttgatggacagtgacagtggcacggatgatgattttgttggagaagcaacgatttctttggaagcaatctatacagaaggaagcatacccccaactgtttataatgttgtgaaagaagaagaataccgtggagaaatcaaagtgggcctgacgttcactccagaggatgatcgcgatcggggtttatctgaggaagacattggtggatggaagcagtcatcttga</cdnaseq>|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]
AA = <aaseq>MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVAS                    GKGSDPEWNETFMFSVTHNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIPPT                    VYNVVKEEEYRGEIKVGLTFTPEDDRDRGLSEEDIGGWKQSS</aaseq>|
 
DNA = <dnaseqindica>91..157#336..401#1044..1170#1465..1579#1981..2040#gtctcgcttcctggtcaaattgttcgctaataagcatcgatcgaaggcgaggccagccagccagccggggcgccgggggagctggggaagatggtgcaggggacgctcgaggtgctgctcgtcggagccaagggcctcgagaacaccgactacctgtgtacgcttcggatctctgaacttacctgacttctggtcttctgtagtaaaggagtagtagcttctttttagctttgtcgatcagttcgtttactgctgctgctgagagcctgagagttggtctgaatctgtgatttactgctgatgagctgcgttgctcctgcaaaccttcgctgcaggcaacatggacccgtacgcggttctcaaatgccgctcgcaggagcagaagagcagcgttgcgtcaggtatgttccaataccctttctcatatactcctacaatgcagaagaaaaatgttttgccttttgtgatcatagtctagggaaggttgtcaggatggtagctttgttcagataatcttcctgccaaccaaaagattaaaacttcagatgctcttgataacagtgctcatacagattgttttatcatagtgcatgagccatttttctgaggaacgacgtgctacttatatggttgaaactctgagcacttcaacatcagaaggtatctaaggaaactgcaataataatactgtgcacatcgagttaaaaatgcagcaatatcacgccaaaagcacatcaactaggtagcatctctcaattaaagctcatcaactcggtagcatctcaattgttcacccattcttcacagctcacattgatatggagttatggaccatcaaatatcaaaagaaaaatcctagattaatcaatatctgcaaaacgtatacatggttgggaaatgggaaatgcctctttcatctcaattgcaaaaggatatgatttggacgtgtttaacactactaacgagttgctttgttactgatggcatgctccattgggtggtcccaactcccaagtgaatgtaactcgatccattcggtgcaggtaaaggatctgaccctgaatggaacgaaacctttatgttcagcgtcactcacaacgctacagagctcatcatcaagttgatggacagtgacagtggcacggatgatgattttgttggagaagcaacgtgagtacaccgttgtattctgctcataactaattatacactgcaagtccaattgaactagaggttaattatttctatctatgctagcttccatggctttgttaatatcaaatatccgtctgaatatgggggtgagcccaaactgctcacatgtcggttatgtggtcctgaaattatatcaaaatctgttttgagtaaaatggtcctcaaatgactagtttttccttcagatctataatctcctgacatattgtaggatcctacctgaacgtttgcaatatccatttctttcaggatttctttggaagcaatctatacagaaggaagcatacccccaactgtttataatgttgtgaaagaagaagaataccgtggagaaatcaaagtgggcctgacgttcactccagaggtaattgtcacatattcgtgcccacagctcacaccgggtttatatcgtgcaattgcccacaatgtgctgtgccatcttttgggaccaactgaaaatctgtgttagacattcagaaagttttgaactagcagtactgtttttctttgtaaaatatagtattctgtattgcaaaacctaatatattatatatatactccaaaagtccacatgccattttgtaggtattatatatgctagtgttaacttcatggtataactactaaatactaataattcctcttcctccttttgcctttgctactacatatttctgccaatgtctaccctgaaaatgaacgagctgttttccttttcctgatctgctgtacattttgctgatattttttttcttttattcacaggatgatcgcgatcggggtttatctgaggaagacattggtggatggaagcagtcatcttgaggaagaagcagatactttgatgtcgcactgcatcgctatggtaagtcgtgtgctggaagcctggaacaaagcctattgaaaagagcagtcttgtagaaatacttctcatgattttctaaaagttgtaataatagtgttcgccaatatgctctatatgtaaggaccttgctttgatgcccactaaactgtaataactatggcaagttatgatgcaacagaagtgctataatccttt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059929.1 RefSeq:Os04g0531100]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 4]]
 
[[Category:Chromosome 4]]
 

Latest revision as of 15:19, 6 November 2016

The rice Os04g0531100 was reported as OsPBP1 in 2008 [1] by researchers from the China.

Annotated Information

Gene Symbol

  • Os04g0531100 <=> OsPBP1


Function

  • OsPBP1 is a novel functional C2-domain phospholipids-binding protein that is required for pollen fertility likely by regulating Ca21 and phospholipid signaling pathways.
  • OsPBP1 is a single copy gene and preferentially expressed in pistil and pollen but downregulated by pollination.
  • OsPBP1 had a calcium concentration-dependent phospholipid-binding activity and was localized mainly in cytoplasm and nucleus, but translocated onto the plasma membrane in response to an intracellular Ca21 increase.
  • OsPBP1 protein was localized in a region peripheral to pollen wall and vesicles of elongating pollen tube, and its repressed expression reduced substantially this association and led to alteration of microfilament polymerization during pollen germination.


Mutant

  • Pollen grains of antisense OsPBP1 transgenic lines were largely nonviable, germinated poorly in vitro and of low fertility


Labs working on this gene

  • Institute of Genetics and Developmental Biology, Chinese Academy of Sciences and National Centre for Plant Gene Research, Beijing 100190, China
  • Graduate School of Chinese Academy of Sciences, Beijing 100049, China


References

  1. Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice


Structured Information