Difference between revisions of "Os05g0135700"

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(Created page with "{{JaponicaGene| GeneName = Os05g0135700| Description = S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1)| Version = NM...")
 
(Annotated Information)
 
(5 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''Os05g0135700''' was reported as ''' OsSAMS1''' in 2011 <ref name="ref1" /> by researchers from the China.
GeneName = Os05g0135700|
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<br>
Description = S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1)|
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==Annotated Information==
Version = NM_001061110.1 GI:115461950 GeneID:4337733|
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===Gene Symbol===
Length = 2909 bp|
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*'''Os05g0135700 <=> OsSAMS1'''
Definition = Oryza sativa Japonica Group Os05g0135700, complete gene.|
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<br>
Source = Oryza sativa Japonica Group
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===Function===
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*'''SAM''' deficiency suppressing DNA and H3K4me3 transmethylations at flowering key genes led to a late-flowering phenotype in rice. This information could help elucidate the mechanism of epigenetic control flowering transition.
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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===Mutant===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*RNA interference (RNAi) transgenic rice with downregulated transcripts of '''OsSAMS1''', 2 and 3 showed pleiotropic phenotypes, including dwarfism, reduced fertility, delayed germination, as well as late flowering. Delayed germination was largely rescued by application of SAM in the knockdown lines. Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes).  
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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<br>
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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==Labs working on this gene==
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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*Research Center for Molecular and Developmental Biology, Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
AP = Chromosome 5:2067081..2069989|
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*Graduate School of the Chinese Academy of Sciences, Beijing 100049, China
CDS = 2068523..2069713|
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*National Plant Gene Research Center, Beijing 100093, China
GCID = <gbrowseImage1>
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*Key Laboratory of Molecular Biology, College of Heilongjiang Province, Heilongjiang University, Harbin 150080, China
name=NC_008398:2067081..2069989
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<br>
source=RiceChromosome05
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==References==
preset=GeneLocation
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<references>
</gbrowseImage1>|
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<ref name="ref1">
GSID = <gbrowseImage2>
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Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice
name=NC_008398:2067081..2069989
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</ref>
source=RiceChromosome05
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preset=GeneLocation
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</references>
</gbrowseImage2>|
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<br>
CDNA = <cdnaseq>atggccgcacttgataccttcctctttacctcggagtctgtgaacgagggccaccctgacaagctctgcgaccaagtctcagatgctgtgcttgatgcctgcctcgccgaggaccctgacagcaaggtcgcttgtgagacctgcaccaagacaaacatggtcatggtctttggtgagatcaccaccaaggctaacgttgactatgagaagattgtcagggagacatgccgtaacatcggttttgtgtcagctgatgtcggtctcgatgctgaccactgcaaggtgcttgtgaacatcgagcagcagtcccctgacattgcacagggtgtgcacggccacttcaccaagcgccctgaggagattggtgctggtgaccagggacacatgtttggatatgcaactgatgagacccctgagttgatgcccctcagccatgtccttgctaccaagcttggcgctcgtcttacggaggttcgcaagaatgggacctgcgcatggctcaggcctgacgggaagacccaagtgactgttgagtaccgcaatgagagcggtgccagggtccctgtccgtgtccacaccgtcctcatctctacccagcatgatgagacagtcaccaacgatgagattgctgctgacctgaaggagcatgtcatcaagcctgtcattcccgagcagtaccttgatgagaagacaatcttccatcttaacccatctggtcgcttcgtcattggcggacctcatggtgatgctggtctcactggccggaagatcatcattgacacttatggtggctggggagctcacggtggtggtgccttctctggcaaggacccaaccaaggttgaccgcagtggagcatacgtcgcaaggcaagctgccaagagcattgttgctagtggccttgctcgccgctgcattgtccaagtatcatacgccatcggtgtcccagagccactgtccgtattcgtcgacacatacggcactggcaggatccctgacaaggagatcctcaagattgtgaaggagaacttcgacttcaggcctggcatgatcatcatcaaccttgacctcaagaaaggcggcaacggacgctacctcaagacggcggcttacggtcacttcggaagggacgacccagacttcacctgggaggtggtgaagcccctcaagtgggagaagccttctgcctaa</cdnaseq>|
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==Structured Information==
AA = <aaseq>MAALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVA                    CETCTKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQ                    SPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRK                    NGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVI                    KPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGK                    DPTKVDRSGAYVARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDK                    EILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWE                    KPSA</aaseq>|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]
DNA = <dnaseqindica>1443..2633#gccgtgcccggtcggatctaattaatttacctcctccacctcctcctcctccccccgatcggatcggcccggctcctcctcctccgccgccgccaccgccgccgcaggtgagccgccgattcccctgtcctcgttgctggtagcgttgtcgcgtgtgtgttgctgctgctgctgctgctgctgtccggcttctcccttcattcttgcggcttgaaaagggagaggagggttttagcgttcttggtaggatcaagctctcaggttggatctgagctcgtggttggttgtcttgcggacgtatcatcgtgcctagatattgatttgtttgtgctggtttgggagggttataaggagggtttattgcttttctttcgatcttgtggtatggtagatttagatggggtttctttggttggatttaggtgttgtaagttttatttttgtcatgcttgcttattattatggatggagatggagagagaagcagtaggatgacttccttttagatgtttaataccttgatgcttatcaaacggcttgctgataaacaacatgctagagcagtggttttagtgctagtattatgtctttggctgtcagctcatttgactgttctgcggtagattcgagtcatccccttggtcttgggagttggaattcttataaatgaacggaaaatggaaaaaaaaattgattggtgccacttcaaagttaaatatgccaagacgaattgatatgtttctgctgttgttttatgctcttgattagttgatgcgcatgttcaatgatttatgatgtttgtctttgtggaaagattacatgtaaagagtatagtagaacccctaaaagctagccagcgatttcgctctttttttccaggtctccatgatatgtttacccctaaaagtggtatatttatgtgatagttacaatacatagtggcaccacgattgattatgcgtttatgctgattccggcagaaaattgttagattccttgtgctctatacctgcttgttgcgcttgtagagaatattacaaatacctaacacttgcccaaggaacttaggaacttagtcaactctttgtagggacaactattttagcccaaaattgtggtcttgtcaggtgccaacaaaacagcatcttggcgtacataagctatatagaggattaaaaggaatgttttgttccttgctactgtttttttaacctgtttactcaggacaaattttgttgcataaaccatttgttctagggatcagtattgtcctctcagtgtgttatgtaagcatttccagaaatcaattgtcgctatcagcttccctcacattagctatcacttatacccctttttttctcataggctcaccatgtccattttattcatgatatttctttgtctaaagtatgtgaaataccattttatgcagataggagaagatggccgcacttgataccttcctctttacctcggagtctgtgaacgagggccaccctgacaagctctgcgaccaagtctcagatgctgtgcttgatgcctgcctcgccgaggaccctgacagcaaggtcgcttgtgagacctgcaccaagacaaacatggtcatggtctttggtgagatcaccaccaaggctaacgttgactatgagaagattgtcagggagacatgccgtaacatcggttttgtgtcagctgatgtcggtctcgatgctgaccactgcaaggtgcttgtgaacatcgagcagcagtcccctgacattgcacagggtgtgcacggccacttcaccaagcgccctgaggagattggtgctggtgaccagggacacatgtttggatatgcaactgatgagacccctgagttgatgcccctcagccatgtccttgctaccaagcttggcgctcgtcttacggaggttcgcaagaatgggacctgcgcatggctcaggcctgacgggaagacccaagtgactgttgagtaccgcaatgagagcggtgccagggtccctgtccgtgtccacaccgtcctcatctctacccagcatgatgagacagtcaccaacgatgagattgctgctgacctgaaggagcatgtcatcaagcctgtcattcccgagcagtaccttgatgagaagacaatcttccatcttaacccatctggtcgcttcgtcattggcggacctcatggtgatgctggtctcactggccggaagatcatcattgacacttatggtggctggggagctcacggtggtggtgccttctctggcaaggacccaaccaaggttgaccgcagtggagcatacgtcgcaaggcaagctgccaagagcattgttgctagtggccttgctcgccgctgcattgtccaagtatcatacgccatcggtgtcccagagccactgtccgtattcgtcgacacatacggcactggcaggatccctgacaaggagatcctcaagattgtgaaggagaacttcgacttcaggcctggcatgatcatcatcaaccttgacctcaagaaaggcggcaacggacgctacctcaagacggcggcttacggtcacttcggaagggacgacccagacttcacctgggaggtggtgaagcccctcaagtgggagaagccttctgcctaaaagctccctttcggaggcttttgctctgtcccattatggtgttttgtttcctcgctgctcagcattgtgattcttaacctgccccccgctgccatttatgcccatgcacgctactttcctaataataagtacttataagggtattgtgtttgaatattttacctagaggaggaggaggatttgttatctgttattgcttaagcttatgtaatggtgaaagaaggaaagatgctacactactttgagaagaagaaatgaaacctcctatgttttggt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061110.1 RefSeq:Os05g0135700]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 5]]
 
[[Category:Chromosome 5]]
 

Latest revision as of 15:57, 6 November 2016

The rice Os05g0135700 was reported as OsSAMS1 in 2011 [1] by researchers from the China.

Annotated Information

Gene Symbol

  • Os05g0135700 <=> OsSAMS1


Function

  • SAM deficiency suppressing DNA and H3K4me3 transmethylations at flowering key genes led to a late-flowering phenotype in rice. This information could help elucidate the mechanism of epigenetic control flowering transition.


Mutant

  • RNA interference (RNAi) transgenic rice with downregulated transcripts of OsSAMS1, 2 and 3 showed pleiotropic phenotypes, including dwarfism, reduced fertility, delayed germination, as well as late flowering. Delayed germination was largely rescued by application of SAM in the knockdown lines. Knockdown of OsSAMS1, 2 and 3 led to distinguished late flowering and greatly reduced the expression of the flowering key genes, Early heading date 1 (Ehd1), Hd3a and RFT1 (rice FT-like genes).


Labs working on this gene

  • Research Center for Molecular and Developmental Biology, Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
  • Graduate School of the Chinese Academy of Sciences, Beijing 100049, China
  • National Plant Gene Research Center, Beijing 100093, China
  • Key Laboratory of Molecular Biology, College of Heilongjiang Province, Heilongjiang University, Harbin 150080, China


References

  1. Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice


Structured Information