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| − | {{JaponicaGene|
| + | The rice '''Os05g0426200''' was reported as '''IDEF2''' in 2008 <ref name="ref1" /> by researchers from the Japan. |
| − | GeneName = Os05g0426200|
| + | <br> |
| − | Description = No apical meristem (NAM) protein domain containing protein|
| + | ==Annotated Information== |
| − | Version = NM_001062135.1 GI:115464000 GeneID:4338852|
| + | ===Gene Symbol=== |
| − | Length = 4119 bp|
| + | *'''Os05g0426200 <=> IDEF2''' |
| − | Definition = Oryza sativa Japonica Group Os05g0426200, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *'''IDEF2''', which specifically binds to the iron deficiency-responsive cis-acting element 2 (IDE2) by yeast one-hybrid screening. '''IDEF2''' belongs to anuncharacterizedbranchoftheNACtranscriptionfactorfamily and exhibits novel properties of sequence recognition. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ===Expression=== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *'''IDEF2''' bound to OsYSL2 promoter region containing the binding core site, suggesting direct regulation of '''OsYSL2''' expression. |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | <br> |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Mutant=== |
| − | |
| + | *Repression of the function of ''IDEF2''' by the RNA interference (RNAi) technique and chimeric repressor gene-silencing technology (CRES-T) caused aberrant iron homeostasis in rice. Several genes up-regulated by iron deficiency, including the Fe(II)-nicotianamine transporter gene OsYSL2, were less induced by iron deficiency in the RNAi rice of '''IDEF2''', suggesting that '''IDEF2'''is involved in the regulation of these genes. Many genes with repressed expression in '''IDEF2''' RNAi rice possessed the IDEF2-binding core sites in their promoters, and the flanking sequences were also highly homologous to '''IDE2'''. |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| + | <br> |
| − | AP = Chromosome 5:20887133..20891251|
| + | |
| − | CDS = 20887671..20888093,20888204..20888695,20889201..20889478,20889632..20889788|
| + | ==Labs working on this gene== |
| − | GCID = <gbrowseImage1>
| + | *Laboratory of Plant Biotechnology and §Laboratory of Plant Molecular Physiology, Graduate School of Agricultural and Life Sciences, the University of Tokyo |
| − | name=NC_008398:20887133..20891251
| + | <br> |
| − | source=RiceChromosome05
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage1>| | + | <ref name="ref1"> |
| − | GSID = <gbrowseImage2>
| + | A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants* |
| − | name=NC_008398:20887133..20891251
| + | </ref> |
| − | source=RiceChromosome05
| + | |
| − | preset=GeneLocation
| + | </references> |
| − | </gbrowseImage2>| | + | <br> |
| − | CDNA = <cdnaseq>atggctcaaacttgcttgccacctggctttcgttttcatccaacagatgttgaacttgtttcatactatttgaaaaggaagattatgggaaagaagcctcttattcaagctatatcagatgttgaactgtataaatttgctccctgggatcttcctgctcaatcctgtctccagagcagagatcttgaatggttcttcttttgcccacgagacaagaaatatcctaatgggtctaggacaaatcgttccacaccaaatggttactggaaaacaagtgggaaagatagaacgattgagcttaactctcgcattgttgggtcaaagaaaacactgatttttcatgaaggcaaagcacctaaaggcaacaggactgattgggtgatgtacgaatacaaaatggaagacaatcaattggtctctgctggtttctcaaaggatgattttgtcctctgcaaaattttcaagaaaagtggccttggtccaaggattggggagcaatatggggctccatttaatgaagaagaatgggagcatgcagatgctgaaatgtttcccttgctgccaaatgttgaaacttctgtgtttccattgctgccctcttcagaggtagtaaattctactgatgatacacgtgttcagccttctgttgctgccagagctattgaggaactacctgtgcagcatttacctcatgtatgtgctgggaatggatcaacatatcaaaatattactgttactggtgaaagtgctctcatggaactgccttcccagcactctgttgaatctattggtgatgaggtagtttctgtggacaactgttctaatgtggtcaataatgcagacagtcctgtaattgaggggcttgtattggaggaactttctaggtttttaactgattctcctcatcatggcaaccctgttggggagcactctggtctcccaccaatgtctgaggctgaagctcatgcttttgaggttagcacaaatgatctgtacaatgaaattgcagggcttgctgaattgggtgtgccaaatggtgatggattttctccgtccaatgctggtgttactgaacaacagcccacatactttggagttcctaacagtgaaaattatgtaaatatggatgatatctttgctccagacacaagattatcctatgcatatcctttgccaaacaaccaattttggcattatcccatggatcagttcacatacagtactactctatctgctgcctttccatctggtgactcgcgtccaactatgcgcattgttgatgatttacctgctgctgctaataacggtggctttgcttcaaaacccagcatgcagttcccactgtcataa</cdnaseq>|
| + | ==Structured Information== |
| − | AA = <aaseq>MAQTCLPPGFRFHPTDVELVSYYLKRKIMGKKPLIQAISDVELY KFAPWDLPAQSCLQSRDLEWFFFCPRDKKYPNGSRTNRSTPNGYWKTSGKDRTIELNS RIVGSKKTLIFHEGKAPKGNRTDWVMYEYKMEDNQLVSAGFSKDDFVLCKIFKKSGLG PRIGEQYGAPFNEEEWEHADAEMFPLLPNVETSVFPLLPSSEVVNSTDDTRVQPSVAA RAIEELPVQHLPHVCAGNGSTYQNITVTGESALMELPSQHSVESIGDEVVSVDNCSNV VNNADSPVIEGLVLEELSRFLTDSPHHGNPVGEHSGLPPMSEAEAHAFEVSTNDLYNE IAGLAELGVPNGDGFSPSNAGVTEQQPTYFGVPNSENYVNMDDIFAPDTRLSYAYPLP NNQFWHYPMDQFTYSTTLSAAFPSGDSRPTMRIVDDLPAAANNGGFASKPSMQFPLS</aaseq>|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | DNA = <dnaseqindica>3159..3581#2557..3048#1774..2051#1464..1620#ggttgcttcctccgaaaatcctcatcctctccattgaccagacggcggcgcaggcgcaggcgctcacctccctcctcctccgcggcatccccaatcgaccagctggctcccctgcctcctccgcgtaagttcaccccgatctctctctcgaatcccttgctccgatctccaatccgcgctggttctgtgcgggtttttggattagggcgcggttagcgtcgggggatgtcttggggttggggggtagggttggtggctatttgggggtttggttcgacgattcggggatgggggttgatggatttgtgtggatcggattggtctcgtcgataggttcggggtcgcggatcagggtggtggatgtgatgcaggttttgtgtgagatcgatttgatcgtcgattttggggcctaatttaggattggattgcttggagagcattggtttgtgcagcgttgacttaggtacggtttttttggttaggttgattgggggttccgtttgatcgttgacctgtggtttaggacagatctggaattctccaggttcaattgaagggaagattatctcttttggggggatttcaccgggaaatatcaatcaaccaaaaactagttgtgatttccttgttgtaacatacgtattcgatattcagttttccttctatttcggtttcctccgaaaattaaagtagtagctgcctattttctttgtttggacatgctcatgagggtttatcaagggtttagaatgtcatattttaggaaaacctgtaccttctgctttatatgaccattcatgtttcttatgtctgtcttattttacttgcaggattttgatcctaatcacccatgtctgctgaagtcagcgaggaatatccttatttcctctcctgctacttctggttcatatattgcataaaattccgagatttcacttgatacaagtggatcacctggagttttgtgctaatacttcctatcatgtgaatcagttgtagttagcataattggcaagactcaagttttctctcatctgggttcagaaacatttgtcggttgagtgctcgatctaaactctgcttgagtcttgccgaagattgtttctcaacaatcacgtcttctgttctctctgaggttggaccaatctcccttttggtctgatcaacctcctgatctcccttaagtgaaccgtcctgctgtgttcacgcaatacaatcttctgaagtcctctcttgttccttctgtgctcaaacatcaaaagcagctctctcctaagttctcttgattgtttgtgctcctaaattctgttgtttgagcactcaaacatttcccttactggtcaatcttagatcacttgttgattattggtattggcattatttggtgaagcatttctgcttgtaccttaaacaaaggtctctgttgtcttattggtgctgaaggcaagatatacactgcagtgatggctcaaacttgcttgccacctggctttcgttttcatccaacagatgttgaacttgtttcatactatttgaaaaggaagattatgggaaagaagcctcttattcaagctatatcagatgttgaactgtataaatttgctccctgggatcttcctggtaattcctaattctcatgttatgatgtttttagaaactttaaataaatgataaaatagtggtcacgaagacaatttctcaagaaaaacatgtcatttattctcaattttatgcacaattttgctctaatttgtatgcatcaatcttctgcagctcaatcctgtctccagagcagagatcttgaatggttcttcttttgcccacgagacaagaaatatcctaatgggtctaggacaaatcgttccacaccaaatggttactggaaaacaagtgggaaagatagaacgattgagcttaactctcgcattgttgggtcaaagaaaacactgatttttcatgaaggcaaagcacctaaaggcaacaggactgattgggtgatgtacgaatacaaaatggaagacaatcaattggtctctgctggtttctcaaaggtaatgctatttagtatgcgtattgcttgtcgagtaagctctcacaactacacttagctttatgtgatcaagatttagtaattccttattttatgttcatcgttctgttattatctcctttttattatctttggaagtaaaattgtattctaaaccattagtaacagaagtggaatatggctgggctaataatgctctttatgtgcggtagttatcattgaagaaattttagaactccagaaacagataaaaaacaatagaatattgatccttgtgctgatttataggggctaaagtgcaaattgtgctaggcaccctttgttttgtttttatttttctcactcttatgatagccaatattttgcttttttgaaaagcagttatcaacgatgaagtacttttttggattttgatttagttaaaacaaagctattattggttttataactcttatgtatcctatttgggatattgtactcaatagttcttttaattaaacattcaggatgattttgtcctctgcaaaattttcaagaaaagtggccttggtccaaggattggggagcaatatggggctccatttaatgaagaagaatgggagcatgcagatgctgaaatgtttcccttgctgccaaatgttgaaacttctgtgtttccattgctgccctcttcagaggtagtaaattctactgatgatacacgtgttcagccttctgttgctgccagagctattgaggaactacctgtgcagcatttacctcatgtatgtgctgggaatggatcaacatatcaaaatattactgttactggtgaaagtgctctcatggaactgccttcccagcactctgttgaatctattggtgatgaggtagtttctgtggacaactgttctaatgtggtcaataatgcagacagtcctgtaattgaggggcttgtattggaggaactttctaggtttttaactgattctcctcatcatggcaaccctgttggggaggtagatagagcttgttcattatcagatctccctgtattccttttatgcttgggcatataaaaatgtctgatttttctctgggcttattattttatctatttattttgcagcactctggtctcccaccaatgtctgaggctgaagctcatgcttttgaggttagcacaaatgatctgtacaatgaaattgcagggcttgctgaattgggtgtgccaaatggtgatggattttctccgtccaatgctggtgttactgaacaacagcccacatactttggagttcctaacagtgaaaattatgtaaatatggatgatatctttgctccagacacaagattatcctatgcatatcctttgccaaacaaccaattttggcattatcccatggatcagttcacatacagtactactctatctgctgcctttccatctggtgactcgcgtccaactatgcgcattgttgatgatttacctgctgctgctaataacggtggctttgcttcaaaacccagcatgcagttcccactgtcataactaagtccagaaccgttctagaggtacagtttcgtttttaagttgtttgttttccaggtattaattatttcgggctaatttagttgctgctattaaatcttcaggactctgatactgatgacctagtgggattccatatgctggcagtactgcgcaacagatgtgtcttcatggccacctgctgccgctccgagctaagccaaacctcgctgaatctttctcgtggactgttgctggatttaccagtgctcgaactggtggtcactgcaagcattgtgaggccaacaatgtacattgttttgaaggtttggcctagttctcgatggcgatgctctatgatccgaacttgtctagcctggcgcgctactgaggatcagatattcgctttgtgttaccttatttacttgctgctgaataaagtttgtttatcaaactagtgtatattgtgttatgactgcacttaaaccttatgtaagtttgcatggtttggcctactatttacttgctattaatcttctcctaagttcgttgttttggc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062135.1 RefSeq:Os05g0426200]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
| |
| − | [[Category:Chromosome 5]]
| |
