|
|
| (3 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''Os07g0164100''' was reported as ''' HDA704''' in 2009 <ref name="ref1" /> by researchers from the China. |
| − | GeneName = Os07g0164100|
| + | <br> |
| − | Description = Histone deacetylase superfamily protein|
| + | ==Annotated Information== |
| − | Version = NM_001065492.1 GI:115470716 GeneID:4342472|
| + | ===Gene Symbol=== |
| − | Length = 8683 bp|
| + | *'''Os07g0164100 <=> HDA704''' |
| − | Definition = Oryza sativa Japonica Group Os07g0164100, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *The expression of rice HDAC genes is both tissue/organ-specific, and most of them are responsive to drought or salt stresses. |
| | + | <br> |
| | + | ===Mutant=== |
| | + | *Over-expression of several rice HDACs did not produce any visible phenotype, whereas down-regulation of a few HDAC genes affected different developmental aspects. |
| | + | *HDA704 RNAi altered plant height and flag leaf morphology. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *National Key Laboratory for Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Institut de Biotechnologie des Plantes, Université Paris sud 11, 91405 Orsay, France |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | <br> |
| − | |
| + | ==References== |
| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
| + | <references> |
| − | AP = Chromosome 7:3468178..3476860|
| + | <ref name="ref1"> |
| − | CDS = 3468419..3468585,3469674..3469842,3470339..3470384,3470671..3470753,3471395..3471474<br>,3472320..3472428,3472667..3472735,3472874..3472924,3473059..3473184<br>,3473312..3473435,3473617..3473672,3473790..3473854,3474438..3474513<br>,3475050..3475108,3475275..3475365,3475490..3475990|
| + | Rice histone deacetylase genes display specific expression patterns and developmental functions |
| − | GCID = <gbrowseImage1>
| + | </ref> |
| − | name=NC_008400:3468178..3476860
| + | |
| − | source=RiceChromosome07
| + | </references> |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage1>| | + | ==Structured Information== |
| − | GSID = <gbrowseImage2>
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
| − | name=NC_008400:3468178..3476860 | |
| − | source=RiceChromosome07
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atggcgtctgatatgaggtcactcaacagccaaaagggacagagttgtggagtttcagaccaagcttgccacagcaaaagcaaaagcggcaatgatggaaaaccatcacatgctaaagcaaatggagtttcctcgttgagcgggagtcataatgatgagaaaattttgaaagagaactctggagcatgcaatttaaattccgaccatgccaatcctttatcagtagatgggaccaaagtttctacagcaaggtcggaacttattgacagttcaggccatgatggttgtctgcatgtcaagaatgaaagctgtatggcttgtgatgatctgcttcaagagtctgacaaagaacagcctgggggtacactggaggatctattttcctttaatgatgaagaggatgatgacagtgactgggaaccctctgctcgccttgctttgagcaggtggttttgcttgaactgtacagtgccaaacatggaggggtttacacattgtcagaattgcgatgagcttaagggatctgtggtagttggatatgatgctttcaaagctcatcttgcacaggcagctttgttatctgctgacgcagcgctgccatcagtatctacagctgtcggttttgatgaaagaatgttgctccatagtgagatagagattaaaccaaatccacatccagaaaggcctgaccgccttcgtgcaatcgctgccagtcttgctgctgcaggtatcttcccttcaaaatgtgtcatggtacctcctcgagaaatcactaaggaagaactcctaagggtccatacttcagatcacattgacagtgttgagcagacaaagaacatgctttacagttacttcacttcagatacctatgcaaatggacactcagcatgtgctgccaaacttgcagcagggatatgtgctgatcttgctaacttgatagtatctgggcgtgttcgcaatggatttgcaatggtgagacctcctggccatcatgcaggggtgaaacaagccatgggtttttgtcttcacaataatgcagcagtggctgcattagctgcacaaagagctggtgccaagaaagtcttaatagttgactgggatgtccaccatggcaatggaacacaggagatatttgatggggacaattctgtcttgtacatatcattacatcggcatgaggatggaagcttctaccctggaactggggcagcaaatgaggtgggagttatggatggccaaggattctcagtcaatataccttggagccgtggtggtgttggagacaatgactacatatttgcttttaagcatgtggtgcttccgatagctgcagaatttgctccagacatcaccatcatatctgcaggatttgatgcagcgaggggtgaccctctgggttgttgtgatgtcacacctgctggatattctaggatggcgtccatgctaactgcttgttcacagggaaaattgttggttatacttgagggaggatacaatcttcggtctatatcctcatcagctactgaagttgttaaggtcctacttggggatagtcctgtttatgatacagatgcaactgaaccatcagaggagggcatacagactgtcttacaagtcctgagtatccagcagcaattttggccagttttagttccatcctttgcatcagttctggcactgcagcggtcggttttttccagatataccactgaagtaaacaagatgaaaaggaagcatgcaggaggggcaggacccttctggtggaaatgggggagtaaaaggctactgtacgaagtgctatttgagggccgctgtctgaggaaaaccaaggatacaggcaaagaaaaattgaatgatgaagcagagccctaa</cdnaseq>|
| |
| − | AA = <aaseq>MASDMRSLNSQKGQSCGVSDQACHSKSKSGNDGKPSHAKANGVS SLSGSHNDEKILKENSGACNLNSDHANPLSVDGTKVSTARSELIDSSGHDGCLHVKNE SCMACDDLLQESDKEQPGGTLEDLFSFNDEEDDDSDWEPSARLALSRWFCLNCTVPNM EGFTHCQNCDELKGSVVVGYDAFKAHLAQAALLSADAALPSVSTAVGFDERMLLHSEI EIKPNPHPERPDRLRAIAASLAAAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQ TKNMLYSYFTSDTYANGHSACAAKLAAGICADLANLIVSGRVRNGFAMVRPPGHHAGV KQAMGFCLHNNAAVAALAAQRAGAKKVLIVDWDVHHGNGTQEIFDGDNSVLYISLHRH EDGSFYPGTGAANEVGVMDGQGFSVNIPWSRGGVGDNDYIFAFKHVVLPIAAEFAPDI TIISAGFDAARGDPLGCCDVTPAGYSRMASMLTACSQGKLLVILEGGYNLRSISSSAT EVVKVLLGDSPVYDTDATEPSEEGIQTVLQVLSIQQQFWPVLVPSFASVLALQRSVFS RYTTEVNKMKRKHAGGAGPFWWKWGSKRLLYEVLFEGRCLRKTKDTGKEKLNDEAEP</aaseq>|
| |
| − | DNA = <dnaseqindica>8276..8442#7019..7187#6477..6522#6108..6190#5387..5466#4433..4541#4126..4194#3937..3987#3677..3802#3426..3549#3189..3244#3007..3071#2348..2423#1753..1811#1496..1586#871..1371#gtggccgcgccgcgcccctccaaaaatccaatcgcgagaggcgagcgccgccgccgccgggatcgccctccaggtacggccgcctccgcccccgaggtcgccacggcgatttctcgtcggattcttcgattttcgcccgcggtttcaccgttccggggagagctagtcggggagtgtaggattttttttttctgagaaaaaggttttggatggtgggggttagggtttggttgaatcgtttgtatccgagttttgcgcggcccggatgttcaatccggtgatttcgtggtagctttgccgtccgggctgcgagggtagccgtagcgtgcggttgggttgtttctggtgttggggggatggggttgggagggtttgtgttctgaggaatctatgcgaggaagaagaaccaggtgaggtttgcggtgaggttttggtactgatattgcgctgcagaatcagtagatgcgatggaagagcgctgaggttttggaagggttttgagcagattatgcagtagtttcaggagatgcatttcgccgcatccccatttatagaaagtacctctgcgagcgttagtgctaggattgtcgatgcgcttcatgaggagatgttgaatttggcggctagctatgttgatgcattaactgctttcttatggttttgtgcgtaacggcaatttttttggataaggcgtgagtaggtttggcatgtagtaatcgattatcaataatgctactgagatttggcatgtgataatcagctattaataattcttagggctccctgtcggaagtccaaattcttatccactcttgtgtttcctatgctgatcttgtcgtatcacaattacagattgcgttgcatgctctgatggcgtctgatatgaggtcactcaacagccaaaagggacagagttgtggagtttcagaccaagcttgccacagcaaaagcaaaagcggcaatgatggaaaaccatcacatgctaaagcaaatggagtttcctcgttgagcgggagtcataatgatgagaaaattttgaaagagaactctggagcatgcaatttaaattccgaccatgccaatcctttatcagtagatgggaccaaagtttctacagcaaggtcggaacttattgacagttcaggccatgatggttgtctgcatgtcaagaatgaaagctgtatggcttgtgatgatctgcttcaagagtctgacaaagaacagcctgggggtacactggaggatctattttcctttaatgatgaagaggatgatgacagtgactgggaaccctctgctcgccttgctttgagcaggtggttttgcttgaactgtacagtgccaaacatggaggggtttacacattgtcaggtaaaggttattactttgtcagtgtaatcaggaatgccgtatgatttcttagaaattttagttcagatcatccagtgacattattttgattttggttttcttgatgtttattctcatactctagaattgcgatgagcttaagggatctgtggtagttggatatgatgctttcaaagctcatcttgcacaggcagctttgttatctgctgacgcaggtgcttctttacattctttactcagggtttaggttcttctttacacttgtagctatctttacacttgcagtttgaagcacagaatgtgtcccattacatcggttgttcatatgttatgtgtatccaacaacttcttaatttgtcacaatctcactattttatgcagcgctgccatcagtatctacagctgtcggttttgatgaaagaatgttgctccatagtgaggtaagcaatgaacttccgattatgttgtataaactagcaccatatgacatgtttggatctgacatcctacatcaaaattggccattgcttttctctctttctcccattgtttaatagcaaggattcgcataaatcttaattgctccttagtgtgctcagtgaaccttcttgtttgattgcttatgagttgtttcatctgagagatatttgttcaatcccattggagaacaaaacagaaacctgcaattgcaagctcatttacattgctaatttggaatcaaataaatattccttttctgtgctttcgtataacatgacaatattgaagtgtttcttgtttctgtatctgcttctaaacaatataatctaattatattctctttgaacatagattaaaataattctttctcaaaactagttgcatttaaccaaaaaaaattattttgaaagtacctttttttggcctcctaattttctctatcagcacagagccactgtaattctggactgacatctcacatttcctatgttatcagatagagattaaaccaaatccacatccagaaaggcctgaccgccttcgtgcaatcgctgccagtcttgctgctgcaggtactctatcattaactttgagatatcttttctatttagttattcagtgaaagcaactgtgataaaaaatacctctacaaacttttgtgattgtctgatcttgtttaaatatttaatctaggtctatgttttgatgattgcttactgttgcaaccgtgttgcccaatgtaacccaaaagtatatatggtagtggatagctaatctaaaaggtgtatctgatcttgttgaaagcaaagactgtctatgttttgatgattgcttactgttgcaaccgtgttgcccaatgtaacccaaaagtatatatggtagtggatagctaatctaaaaggtgtatctgatcttgttgaaagcaaagactttaatttgttacttcttgtgctctagcagatttatacaatgttttccaaaaacacatatggtagctaatcaagtaatcgacactgaaaatagttgatttgtgctgtagcaaatccacaaaactgtttccttgtcaaccatgttaattgaaatgggttgatgaaatagccttgctatgccactgcttatcaagttttactttaactcatatttccaatatctcaggtatcttcccttcaaaatgtgtcatggtacctcctcgagaaatcactaaggaagaactcctaagggtatgtaagagtttggcatgttaattatttttgctgccctatgttcccccagtatacttgtccttagtacaatcttttcgataatcctaacacattcaaaatcgtgcttacttctaggtccatacttcagatcacattgacagtgttgagcagacaaagaacatgctttacaggtactgtgtttattccatacttaaaagccatcttgtaattaccttgctttagttttgtactgtactgtttgttttagtataattaattgcatgctaatgacattatatttgctgcttgtgtgttctagtcttgctggaaagatttgcattgtcataacgtcattttgggatcgatttgtagttacttcacttcagatacctatgcaaatggacactcagcatgtgctgccaaacttgcagcagggatatgtgctgatcttgctaacttgatagtatctgggcgtgttcgcaatggatttgcaatggtactgtgcatatcatcttatatttgcaattctcgacctcttttttgcacagtacacctagacacctgagagttattattttgatatactttgcatgttgatactgactgtgtctaccggagagcaggtgagacctcctggccatcatgcaggggtgaaacaagccatgggtttttgtcttcacaataatgcagcagtggctgcattagctgcacaaagagctggtgccaagaaagtcttaatagttgactgggtaatgctagttacaagtttgcatttgaacttataccattgcattctgttggcatcatggacccccccaaaaaaagatagtgcctcaaatggatgttaatccatctcatcagtggtgctcaattgttgttgcaggatgtccaccatggcaatggaacacaggagatatttgatggggacaattctgtgagttatcatcttccttttgtgttgctaattgctttgcagtcctttactatacttccatatgcatggccaccaattgaccttctttccctgagtccttatttcttacatggataagttttcttcttcttctttcaggtcttgtacatatcattacatcggcatgaggatggaagcttctaccctggaactggggcagcaaatgaggtgattttctttaacatttgaagataatttatacaacactacatctgaactctgaactagtgaactacatcctatttgagccaactgatgctggctaaccgaatctggagtatttggggcatctcctttgacagattgcatgactctttttatcagagtttctgacctagcatgtggaaacttgagttctaagatgattcgttttatattgtaacttcttgcatgggcatcacttcaggtgggagttatggatggccaaggattctcagtcaatataccttggagccgtggtggtgttggagacaatgactacatatttgcttttaagcatgtggtgcttccgataggtaataattgaataggggcatttgcatatgtgctagtcaacttaaagttgctaataacaatattttctcaacgtaaacatggggaatatccagtgaaaaccatcaaataagtgaaaacccatgaaaaccatgcctaaaagttttgtaaattcatgaaaaaattactagagataggtataggcatgaaatacattcataccaaattttaagtccaaactcaacttcatttgagagaaacaaaaaagacaaatttcgggtgaatagtgttctgttactattcacctcaaatttgtctattttgtttctttcaaatgagttgagatttggtatgaatgtatttcatgtctatacctatctctagtatttttttcatgaatttacaaaacttttagatatggttttcacgagttttcacttatttgatggttttcaccggacatgtcccccggaacatacctatctttaatttgtaaagtcaagagcagctcacgcggactcctttgaattttttttgtgcttcgtcttctgtgagacttagcattttagaactttagatccttgttagaaagggcacagacaaaatatattgacacattggaacaaaaacctgtttatgccctgtttgggggagcttctagcagctgcagcttctcccagaagctccagctcccccaaacagggtgtctattcatttgggtaaaacatgtctgcctaaagtacttgggtcacaggcaccttgttatgtagattacattattaccttaataccttatattacccgcttgcgtttttgtatattgctattgcatgttctcgtttcaatgaattttctttcatgaatgcagctgcagaatttgctccagacatcaccatcatatctgcaggatttgatgcagcgaggggtgaccctctgggttgttgtgatgtaagttcgtaagactaacacatgattgttgtctctaaatcatgaacctgtttttttccacttccatttttgcatcattttagaaatctttgatgattctagatttctggtgtacgcttgtacctcctaactggcttcttagagatgaacgttcagactttgcagaggattttcttcttgtgaaacttaggctaacctttcatatgacatcatataggaaaattacatgttatttgggctcctttagaagctaattttaactgcacaactcatgtatggactttttcttggaccacattgaaacgccattcaagctcatacacagttgcttctttagggatgcactcattgagtcagtggtacactggtatggttgtgagatgcattgctgttctgtttggtttgtcatatgtgtttgtaaatactagagcttagtcaaatatgaagatgataactatgctgatgttctcacaagttagactgaactatatcatccatgcaaccctcaacttcgatactattcgtgtttgtttgctaatttattcttgtctgtgtgccttttttgtcctgtttgatatttcaatgcactccatgtcagtctgagtctgataattttgaccaacttcctctttaattaataggtcacacctgctggatattctaggatggcgtccatgctaactgcttgttcacagggaaaattgttggttatacttgagggagggtaggtacccagatgttctatcaatttaagataaatatatattcaaaaggtaggcaatgcctagaaatttgatccgcttgagatgatcacctgtaggctgtcatcttggacctaatatacacagcatcctgcttagagtttttggatttgtaggcactaaatcttaattttttatttttattttgatcagctaactaaattttgtgcaagtatatttagttgagatttgagaataccacatcaacacttatgcaatgttttttcgtcttgcctacctttggtgcagatacaatcttcggtctatatcctcatcagctactgaagttgttaaggtatgcattcttcacagtaacatctcattcttgttcaatggaatttataaataccataaggaggtaaggaactaagctatgtatgatcaactgcgttagcatcgtaactctccttggcagcaattgtcccaatatctctgaatgaaaattctgtttgtggcattagtcaaggattcaatttattttttgttgcctaactccctatggatatcaaaagctcaaggaacacatatgttgcaactggtttgattttctttcttttagtgctaggcagataaaattctaacatgatggatggcattctgcagttatataaccatttttattcaattaactgcattattgtatttgcagacaattcagcattttatgtatatgatataatgcagatatcgaaatacgggcagctgctttattcatttcagctgagagttgttatggttttaatgttgacatactgtcgttgacccatcttgatgatatttgacacttgcaggtcctacttggggatagtcctgtttatgatacagatgcaactgaaccatcagaggagggcatacagactgtcttacaagtcctgagtatccagcagcaattttggccagttttagttccatcctttgcatcagttctggcactgcagcggtcggttttttccagatatagtgagtgacaaaagtgcaatcaacattgccactaattaaactagatatattaagatattgatcagtagcttatttattgtggatacaaggattagaataatcagactcttgacttctgtgctagtttttggacactaatagccacatggtttggggggcaatggtgctaactttctgattcttcacataactagattatgggttagattttattactgagttaaggcttaaagatcatgcttgatcttttaactttagctctgaccattctaaatttatcttttccggtggagatgctattctcataatattgtttgagttccatgttaaacaaccgatgatttccatttcttcctgcagctggctatagttgtgaggtcccaaatctgccatattgttcccaacagtagcttgccagagacctatttatagtaaaggtgtagtctcactgagaccaaagaggttttgcgctgttccttttggtgagaattacttgagaatagattttcttttagactcaaaacaataaacggacgctaaagttcaccttcccttgcaaaggttctactgcgttctcttaggttggctttgcccaatttgcttcccacttccccactgctgaaaaagatagaagattgagtgatctcatgttagactagccatgttagctcttacgaatttcagttgtgctgatatttatagctgcgctgcagctctttatgctgatattgtaataagtaatacagtgagtgaatgatgtggttgggaggaatcaagggaaatttacagcatgcattaaaatacaacaccttctatactattttgggtacacgcgtagacaaccaaaggaaaagaacatgtatttctaattgttagtagacaatatttgatcttgttctttcttatgttgtgtcttgtttatctagataacttgatatttgatcttgttctgatttgtactgttagattagtttttctctcttatgtgcactagaaactatctgaggactactgttctgcttaccattgttttctgcagtaaagtgatttatatgttttttgatataatctctttttgcgatgtgtagccactgaagtaaacaagatgaaaaggaagcatgcaggaggggcaggacccttctggtggaaatgggggagtaaaaggctactgtacgaagtgctatttgagggccgctgtctgaggaaaaccaaggatacaggcaaagaaaaattgaatgatgaagcagagccctaaatgtgttgctgctgaagcctgactgctgatctcatcaacatccatagtgtagtgggctgactggggttccctgaatgtagcttgcatataccgagccaaattttgactggagaattaagatggtagttcgtgtttttaggtgaaatttgtgaacaaccttgttgacatgtattggatgttcagttgtattagaaatagagtcaagtttaccatcctgtcgtctgtcgaatgatcctgatgt</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065492.1 RefSeq:Os07g0164100]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 7]] | |
| − | [[Category:Chromosome 7]]
| |
