Difference between revisions of "Os10g0483000"

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(Created page with "{{JaponicaGene| GeneName = Os10g0483000| Description = Similar to Transcription factor homolog BTF3-like protein| Version = NM_001071418.1 GI:115482579 GeneID:4348929| Len...")
 
 
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{{JaponicaGene|
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The rice '''''Os10g0483000''''' was reported as '''''Osj10gBTF3''''' in 2012 <ref name="ref1" /> by researchers from China.  
GeneName = Os10g0483000|
 
Description = Similar to Transcription factor homolog BTF3-like protein|
 
Version = NM_001071418.1 GI:115482579 GeneID:4348929|
 
Length = 2729 bp|
 
Definition = Oryza sativa Japonica Group Os10g0483000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:191-Os10g04830.png|right|thumb|427px|'''Figure 3.''' ''Subcellular localization in transfected tobacco suspension cells.<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Gene Symbol===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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*'''''Os10g0483000''''' '''''<=>''''' '''''Osj10gBTF3'''''
|
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Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
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===Function===
AP = Chromosome 10:18697862..18700590|
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* '''''Osj10gBTF3''''' is a BTF3-related sequence in Oryza sativa L. subsp. japonica, which shares the conserved domain of a nascent polypeptide-associated complex with human '''''BTF3'''''.
CDS = 18698043..18698224,18698448..18698486,18698761..18698817,18698906..18699054,18699577..18699644<br>|
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* Inhibition of '''''Osj10gBTF3''''' led to significant morphological changes in all detected tissues and organs, with a reduced size of between 25% and 52%.
GCID = <gbrowseImage1>
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name=NC_008403:18697862..18700590
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===Expression===
source=RiceChromosome10
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* The expression of Osj10gBTF3 was primarily constitutive and generally modulated by salt, high temperature and exogenous phytohormone stress.
preset=GeneLocation
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</gbrowseImage1>|
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===Subcellular localization===
GSID = <gbrowseImage2>
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* The Osj10gBTF3::EGFP (enhanced green fluorescence protein) fusion protein was localized in both the nucleus and cytoplasmic membrane system.
name=NC_008403:18697862..18700590
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source=RiceChromosome10
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You can also add sub-section(s) at will.
preset=GeneLocation
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</gbrowseImage2>|
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==Labs working on this gene==
CDNA = <cdnaseq>atgaatgttgacaagctcaagaagatggcaggtgctgtgcgcaccggggggaagggtagcgtgcgcagaaagaagaaggcagtccataagactacaaccacagatgacaaaagacttcagagcactctgaaaagagtaggagtaaacaccatccctggcattgaagaggttaacattttcaaggatgatgtggttattcagtttctgaatcctaaagtgcaagcttcaattggtgctaatacatgggttgtcagtggaactccacaaacaaagaagctgcaggatctgctgccatcaattatcaaccaacttggtcctgacaacttggataatctgcggaggcttgcagagcaattccaaaagcaggctcctggtgcttctggtgaagaggctggtgccagtgctggagctgctcagggtgacgatgatgatgttcctgagcttgtccctggtgagacatttgaggaggcagcagaagagaaaaaggaatcatga</cdnaseq>|
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* Institute of Crop Science, College of Agriculture and Biotechnology, Zhejiang University, Yu-Hang-Tang Rd. 866, Hangzhou 310058, PR China
AA = <aaseq>MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLK                    RVGVNTIPGIEEVNIFKDDVVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIIN                    QLGPDNLDNLRRLAEQFQKQAPGASGEEAGASAGAAQGDDDDVPELVPGETFEEAAEE                    KKES</aaseq>|
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DNA = <dnaseqindica>2367..2548#2105..2143#1774..1830#1537..1685#947..1014#actccccctatcctctcctcccaccgcgccgccgcctccgccgccgccgccgcggctccccctcctccccacagccaaggtgagctactccggcgtcactagctctcccgtcaagtagtatcaagtatgtttttcttcttgcgattttgtttggggttaggagagtgagtggttggatctgtgccttttcggctggtttaggtaggcgagcctctgcaagatttggcctggggcgacgcgtctccggcaatcgttcgaggtggttttcgtgaggggaatcgctatagaaggtaggaatgagtcgattgcgctgtggctgtttggtggatagtgttgatggtttttgctagatttgggtgccgtggcctagggtggcgtggtgcctagtttggtcgttgagtggtttggtgatggtgagatattgaggaactaatatggagatttactgggttgtagtggagttcttagacgaaatgagtgagcgcaacgtggaagctgtttaatgcgaaatggatagttttacagaatgtaatggagtggtcgcaatgagtaatctgcttaatggcaagtcggtagttttacagaatggaatgaacaagtagctttagccaggtagtaagatcagtgataatgtgctagtatctttgaccggtgttgctgcagacatgagcgtttagtaacttgcggtgtttctgttccatccatgtcagctaccttttgtattggcaaattattcattatgctatgtgtttgctttgttgaacctgctgttgttggccttttatggtgcatatgatgggttgtcttgttttgtggtcagaagttctttacttttttttccttttctgttacttattctgttgatatactttttgtaggattgtagctagttaagtttggcttgtctcgtactttactgaaagaactgatctattgtcttatgcagatgaatgttgacaagctcaagaagatggcaggtgctgtgcgcaccggggggaagggtagcgtgcgcaggtgtgtattattattatatttgcaaccagcatacggcatattgatggttacatgtggctgcccattgtgtttgattcatttttctttatgttgggctagtggtgtatatgtttaatgcttttgttgtgcattttgatgcatgtgtagtgatatgcatggtagcactatattctttttgtattacgataagacgaacattaataaatatatatccaattctatatgcttgctatttccttccataaattcatttgctcgctataatttcactctatattaaatatgaggggacttgaggctatttaacttggtaattatctatgggttaaagataagaaacactgttagataacatatgaccactactaatggtttaccgataataatcttgcgggataattgtcatctaagcatgcattgtcagaaaggatgtatattactcactactcactagtcatgatgtttcatactagtgctgttaggattctaattatgatatgataagttttgtgttggtgacagaaagaagaaggcagtccataagactacaaccacagatgacaaaagacttcagagcactctgaaaagagtaggagtaaacaccatccctggcattgaagaggttaacattttcaaggatgatgtggttattcagtttctgaatcctaaaggtgagatcacttgaatactaaaatgcaagttctacacgattagtaatctacttgctttcttatattttatttcttggttttgttccagtgcaagcttcaattggtgctaatacatgggttgtcagtggaactccacaaacaaagagtatgttctccatgccctgtacttcatttctaatgtagcttttatcaataaatcttaaaacaacatttcagcctgtcattttgttctattttcctgtgtagagtagataatagctacccatagtatgtatatgtatgaaagacctaatttggactttccatttctcagagatctttttttgctcaagctaatataatattagctctataaagttgtattattaacttcttgtgtttacataacaataattttatgtttccctttttttgtacagagctgcaggatctgctgccatcaattatcaaccaacttggtatgcctctcgttgcaatttacaatgtttcatgaataatgatccaattagaagtttataataagcaataccaacatttcacctattgttgtcttgatgcttcagcctctgtttatttactaaaatttactgaaatgttgaagcaacttactgggccataacttaccctcatctttgaaagctgttgaagcttcgcttacctttgtttattcctcctattcaggtcctgacaacttggataatctgcggaggcttgcagagcaattccaaaagcaggctcctggtgcttctggtgaagaggctggtgccagtgctggagctgctcagggtgacgatgatgatgttcctgagcttgtccctggtgagacatttgaggaggcagcagaagagaaaaaggaatcatgattttgttgcatgtcttctcctgtgaaggattataagttgcgaattgccattagagacctccgctcttaaaaacctctgacctaccttatttgtgtcagtgctcggttttgtcatgtacgaggatttggtccggtatgttggtggaattttacatcaattaaatgcctcttttggttgcccc</dnaseqindica>|
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==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071418.1 RefSeq:Os10g0483000]|
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<references>
}}
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* <ref name="ref1">
[[Category:Genes]]
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Wang Y, Zhang X, Lu S, Wang M, Wang L, Wang W, Cao F, Chen H, Wang J, Zhang J,
[[Category:Japonica mRNA]]
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Tu J. Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice
[[Category:Oryza Sativa Japonica Group]]
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results in significant plant miniaturization and typical pollen abortion. Plant
[[Category:Japonica Genes]]
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Cell Physiol. 2012 Dec;53(12):2073-89. doi: 10.1093/pcp/pcs146. PubMed PMID:
[[Category:Japonica Chromosome 10]]
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23147221.
[[Category:Chromosome 10]]
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</ref>
 +
</references>
 +
 
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==Structured Information==
 +
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

Latest revision as of 03:18, 9 November 2016

The rice Os10g0483000 was reported as Osj10gBTF3 in 2012 [1] by researchers from China.

Annotated Information

Figure 3. Subcellular localization in transfected tobacco suspension cells.[1].

Gene Symbol

  • Os10g0483000 <=> Osj10gBTF3

Function

  • Osj10gBTF3 is a BTF3-related sequence in Oryza sativa L. subsp. japonica, which shares the conserved domain of a nascent polypeptide-associated complex with human BTF3.
  • Inhibition of Osj10gBTF3 led to significant morphological changes in all detected tissues and organs, with a reduced size of between 25% and 52%.

Expression

  • The expression of Osj10gBTF3 was primarily constitutive and generally modulated by salt, high temperature and exogenous phytohormone stress.

Subcellular localization

  • The Osj10gBTF3::EGFP (enhanced green fluorescence protein) fusion protein was localized in both the nucleus and cytoplasmic membrane system.

You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Crop Science, College of Agriculture and Biotechnology, Zhejiang University, Yu-Hang-Tang Rd. 866, Hangzhou 310058, PR China

References

  1. 1.0 1.1 Wang Y, Zhang X, Lu S, Wang M, Wang L, Wang W, Cao F, Chen H, Wang J, Zhang J, Tu J. Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion. Plant Cell Physiol. 2012 Dec;53(12):2073-89. doi: 10.1093/pcp/pcs146. PubMed PMID: 23147221.

Structured Information