Difference between revisions of "Os10g0483000"

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(Created page with "{{JaponicaGene| GeneName = Os10g0483000| Description = Similar to Transcription factor homolog BTF3-like protein| Version = NM_001071418.1 GI:115482579 GeneID:4348929| Len...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os10g0483000''''' was reported as '''''Osj10gBTF3''''' in 2012 <ref name="ref1" /> by researchers from China.  
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GeneName = Os10g0483000|
 
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Description = Similar to Transcription factor homolog BTF3-like protein|
 
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Version = NM_001071418.1 GI:115482579 GeneID:4348929|
 
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Length = 2729 bp|
 
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Definition = Oryza sativa Japonica Group Os10g0483000, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:191-Os10g04830.png|right|thumb|427px|'''Figure 3.''' ''Subcellular localization in transfected tobacco suspension cells.<ref name="ref1" />.'']]
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Gene Symbol===
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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*'''''Os10g0483000''''' '''''<=>''''' '''''Osj10gBTF3'''''
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|
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Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
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===Function===
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AP = Chromosome 10:18697862..18700590|
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* '''''Osj10gBTF3''''' is a BTF3-related sequence in Oryza sativa L. subsp. japonica, which shares the conserved domain of a nascent polypeptide-associated complex with human '''''BTF3'''''.
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CDS = 18698043..18698224,18698448..18698486,18698761..18698817,18698906..18699054,18699577..18699644<br>|
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* Inhibition of '''''Osj10gBTF3''''' led to significant morphological changes in all detected tissues and organs, with a reduced size of between 25% and 52%.
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GCID = <gbrowseImage1>
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name=NC_008403:18697862..18700590
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===Expression===
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source=RiceChromosome10
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* The expression of Osj10gBTF3 was primarily constitutive and generally modulated by salt, high temperature and exogenous phytohormone stress.
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preset=GeneLocation
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</gbrowseImage1>|
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===Subcellular localization===
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GSID = <gbrowseImage2>
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* The Osj10gBTF3::EGFP (enhanced green fluorescence protein) fusion protein was localized in both the nucleus and cytoplasmic membrane system.
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name=NC_008403:18697862..18700590
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source=RiceChromosome10
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You can also add sub-section(s) at will.
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preset=GeneLocation
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</gbrowseImage2>|
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==Labs working on this gene==
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CDNA = <cdnaseq>atgaatgttgacaagctcaagaagatggcaggtgctgtgcgcaccggggggaagggtagcgtgcgcagaaagaagaaggcagtccataagactacaaccacagatgacaaaagacttcagagcactctgaaaagagtaggagtaaacaccatccctggcattgaagaggttaacattttcaaggatgatgtggttattcagtttctgaatcctaaagtgcaagcttcaattggtgctaatacatgggttgtcagtggaactccacaaacaaagaagctgcaggatctgctgccatcaattatcaaccaacttggtcctgacaacttggataatctgcggaggcttgcagagcaattccaaaagcaggctcctggtgcttctggtgaagaggctggtgccagtgctggagctgctcagggtgacgatgatgatgttcctgagcttgtccctggtgagacatttgaggaggcagcagaagagaaaaaggaatcatga</cdnaseq>|
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* Institute of Crop Science, College of Agriculture and Biotechnology, Zhejiang University, Yu-Hang-Tang Rd. 866, Hangzhou 310058, PR China
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AA = <aaseq>MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLK                    RVGVNTIPGIEEVNIFKDDVVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIIN                    QLGPDNLDNLRRLAEQFQKQAPGASGEEAGASAGAAQGDDDDVPELVPGETFEEAAEE                    KKES</aaseq>|
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DNA = <dnaseqindica>2367..2548#2105..2143#1774..1830#1537..1685#947..1014#actccccctatcctctcctcccaccgcgccgccgcctccgccgccgccgccgcggctccccctcctccccacagccaaggtgagctactccggcgtcactagctctcccgtcaagtagtatcaagtatgtttttcttcttgcgattttgtttggggttaggagagtgagtggttggatctgtgccttttcggctggtttaggtaggcgagcctctgcaagatttggcctggggcgacgcgtctccggcaatcgttcgaggtggttttcgtgaggggaatcgctatagaaggtaggaatgagtcgattgcgctgtggctgtttggtggatagtgttgatggtttttgctagatttgggtgccgtggcctagggtggcgtggtgcctagtttggtcgttgagtggtttggtgatggtgagatattgaggaactaatatggagatttactgggttgtagtggagttcttagacgaaatgagtgagcgcaacgtggaagctgtttaatgcgaaatggatagttttacagaatgtaatggagtggtcgcaatgagtaatctgcttaatggcaagtcggtagttttacagaatggaatgaacaagtagctttagccaggtagtaagatcagtgataatgtgctagtatctttgaccggtgttgctgcagacatgagcgtttagtaacttgcggtgtttctgttccatccatgtcagctaccttttgtattggcaaattattcattatgctatgtgtttgctttgttgaacctgctgttgttggccttttatggtgcatatgatgggttgtcttgttttgtggtcagaagttctttacttttttttccttttctgttacttattctgttgatatactttttgtaggattgtagctagttaagtttggcttgtctcgtactttactgaaagaactgatctattgtcttatgcagatgaatgttgacaagctcaagaagatggcaggtgctgtgcgcaccggggggaagggtagcgtgcgcaggtgtgtattattattatatttgcaaccagcatacggcatattgatggttacatgtggctgcccattgtgtttgattcatttttctttatgttgggctagtggtgtatatgtttaatgcttttgttgtgcattttgatgcatgtgtagtgatatgcatggtagcactatattctttttgtattacgataagacgaacattaataaatatatatccaattctatatgcttgctatttccttccataaattcatttgctcgctataatttcactctatattaaatatgaggggacttgaggctatttaacttggtaattatctatgggttaaagataagaaacactgttagataacatatgaccactactaatggtttaccgataataatcttgcgggataattgtcatctaagcatgcattgtcagaaaggatgtatattactcactactcactagtcatgatgtttcatactagtgctgttaggattctaattatgatatgataagttttgtgttggtgacagaaagaagaaggcagtccataagactacaaccacagatgacaaaagacttcagagcactctgaaaagagtaggagtaaacaccatccctggcattgaagaggttaacattttcaaggatgatgtggttattcagtttctgaatcctaaaggtgagatcacttgaatactaaaatgcaagttctacacgattagtaatctacttgctttcttatattttatttcttggttttgttccagtgcaagcttcaattggtgctaatacatgggttgtcagtggaactccacaaacaaagagtatgttctccatgccctgtacttcatttctaatgtagcttttatcaataaatcttaaaacaacatttcagcctgtcattttgttctattttcctgtgtagagtagataatagctacccatagtatgtatatgtatgaaagacctaatttggactttccatttctcagagatctttttttgctcaagctaatataatattagctctataaagttgtattattaacttcttgtgtttacataacaataattttatgtttccctttttttgtacagagctgcaggatctgctgccatcaattatcaaccaacttggtatgcctctcgttgcaatttacaatgtttcatgaataatgatccaattagaagtttataataagcaataccaacatttcacctattgttgtcttgatgcttcagcctctgtttatttactaaaatttactgaaatgttgaagcaacttactgggccataacttaccctcatctttgaaagctgttgaagcttcgcttacctttgtttattcctcctattcaggtcctgacaacttggataatctgcggaggcttgcagagcaattccaaaagcaggctcctggtgcttctggtgaagaggctggtgccagtgctggagctgctcagggtgacgatgatgatgttcctgagcttgtccctggtgagacatttgaggaggcagcagaagagaaaaaggaatcatgattttgttgcatgtcttctcctgtgaaggattataagttgcgaattgccattagagacctccgctcttaaaaacctctgacctaccttatttgtgtcagtgctcggttttgtcatgtacgaggatttggtccggtatgttggtggaattttacatcaattaaatgcctcttttggttgcccc</dnaseqindica>|
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==References==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071418.1 RefSeq:Os10g0483000]|
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<references>
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}}
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* <ref name="ref1">
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[[Category:Genes]]
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Wang Y, Zhang X, Lu S, Wang M, Wang L, Wang W, Cao F, Chen H, Wang J, Zhang J,
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[[Category:Japonica mRNA]]
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Tu J. Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice
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[[Category:Oryza Sativa Japonica Group]]
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results in significant plant miniaturization and typical pollen abortion. Plant
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[[Category:Japonica Genes]]
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Cell Physiol. 2012 Dec;53(12):2073-89. doi: 10.1093/pcp/pcs146. PubMed PMID:
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[[Category:Japonica Chromosome 10]]
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23147221.
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[[Category:Chromosome 10]]
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</ref>
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</references>
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==Structured Information==
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]

Latest revision as of 03:18, 9 November 2016

The rice Os10g0483000 was reported as Osj10gBTF3 in 2012 [1] by researchers from China.

Annotated Information

Figure 3. Subcellular localization in transfected tobacco suspension cells.[1].

Gene Symbol

  • Os10g0483000 <=> Osj10gBTF3

Function

  • Osj10gBTF3 is a BTF3-related sequence in Oryza sativa L. subsp. japonica, which shares the conserved domain of a nascent polypeptide-associated complex with human BTF3.
  • Inhibition of Osj10gBTF3 led to significant morphological changes in all detected tissues and organs, with a reduced size of between 25% and 52%.

Expression

  • The expression of Osj10gBTF3 was primarily constitutive and generally modulated by salt, high temperature and exogenous phytohormone stress.

Subcellular localization

  • The Osj10gBTF3::EGFP (enhanced green fluorescence protein) fusion protein was localized in both the nucleus and cytoplasmic membrane system.

You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Crop Science, College of Agriculture and Biotechnology, Zhejiang University, Yu-Hang-Tang Rd. 866, Hangzhou 310058, PR China

References

  1. ↑ 1.0 1.1 Wang Y, Zhang X, Lu S, Wang M, Wang L, Wang W, Cao F, Chen H, Wang J, Zhang J, Tu J. Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion. Plant Cell Physiol. 2012 Dec;53(12):2073-89. doi: 10.1093/pcp/pcs146. PubMed PMID: 23147221.

Structured Information