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| − | {{JaponicaGene|
| + | The rice '''''Os09g0298200''''' was reported as '''''OsAPS1''''' in 2005 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os09g0298200|
| |
| − | Description = Similar to Brittle 2|
| |
| − | Version = NM_001069343.1 GI:115478425 GeneID:4346656|
| |
| − | Length = 4380 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os09g0298200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:Os09g0298200.png|right|thumb|427px|'''Figure 3.''' ''Expression of rice AGPases in leaves, stems and roots during light/dark periods.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * '''''Os09g0298200''''' '''''<=>''''' '''''OsAPS1''''','''''APS1''''' |
| − | |
| + | |
| − | Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
| + | ===Function=== |
| − | AP = Chromosome 9:7811146..7815525|
| + | * '''''OsAPS1''''' encodes a small subunit of ADP-glucose pyrophosphorylase (AGPase). |
| − | CDS = 7811663..7811779,7812275..7812394,7812468..7812566,7812746..7812857,7812958..7813061<br>,7813241..7813420,7813511..7813780,7814264..7814560,7815183..7815386<br>|
| + | * AGPase catalyzes the conversion of glucose (Glc)-1-phosphate and ATP to ADP-glucose and pyrophosphate. |
| − | GCID = <gbrowseImage1>
| + | ===Expression=== |
| − | name=NC_008402:7811146..7815525
| + | * '''''OsAPS1''''' was expressed later in seed development. |
| − | source=RiceChromosome09
| + | * In order to clarify the effect of sugars and plant hormones on AGPase gene expression more precisely, a rice cell culture system was used. |
| − | preset=GeneLocation
| + | * '''''OsAPL3''''' transcript significantly accumulated in response to increased levels of sucrose and abscisic acid (ABA) concentration in the medium; however, the transcripts of other AGPase genes did not show significant accumulation. |
| − | </gbrowseImage1>|
| + | ===Subcellular localization=== |
| − | GSID = <gbrowseImage2>
| + | * Based on the alignment analysis (Fig. 1) and subcellular localizations as predicted by programs (PSORT, ChloP, TargetP and iPSORT), '''''OsAPS2''''', '''''OsAPL2''''' and '''''OsAPL3''''' are extra-plastidial forms and '''''OsAPS1''''', '''''OsAPL1''''' and '''''OsAPL2''''' are plastidial forms of AGPase. |
| − | name=NC_008402:7811146..7815525
| + | |
| − | source=RiceChromosome09
| + | You can also add sub-section(s) at will. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | ==Labs working on this gene== |
| − | CDNA = <cdnaseq>atggcgatgatggcgatgggcgcggcgtcctgggccccgatcccggcgccggcgagggcggcggccgcattctatcccggccgcgatcttgcggcggcgaggcggcggcgtggggcggcggcgaggaggccgttcgtgttcacgccgcgtgccgtgtcggactcccggagctcgcagacgtgcctcgatccggacgccagcacgagtgttcttgggatcatccttggaggtggtgctgggacaaggctgtatccgctgacaaagaagagggcgaagccggcggtgccgttgggtgctaattacaggctcatagatatcccggtcagcaactgtctgaacagcaatgtgtcgaagatctatgtcctgacacagttcaactccgcgtcgctcaatcgtcacctctcgagggcctatggaaacaacattggtggttacaagaacgaggggtttgttgaagttcttgctgcgcagcagagcccagagaatcctaactggtttcagggtactgcagatgctgtgcgacaatacttatggctatttgaggaacacaatgttatggagtttctcattttggctggagatcacctgtaccgtatggactaccaaaagttcattcaggcccacagagaaacaaatgctgatataaccgttgctgcgctgcccatggatgaagaacgtgctacagcatttggccttatgaagattgatgatgaagggaggatcattgaatttgcagaaaagccaaaaggagagaagttgaaatcaatgatggttgacactaccatacttggccttgatactgagagggcaaaggaattgccttacattgctagtatgggaatctatgtttttagcaaagatgtgatgcttaagcttctccgtcaaaatttccctgctgcaaatgactttggaagcgaggttattcctggagcaacagaaattggaatgagggtgcaagcttacttatatgatggttactgggaagatattggtactatagaggcattctacaatgccaacttggggataaccaagaaacctgtgccagattttagcttctatgaccgttctgccgcaatttatacgcaacctcgatacttgcctccatcaaaagttcttgatgctgatgtgacagacagtgttattggtgaaggttgtgttattagacattgcacaatcaaccattctgtggttggactccggtcctgtatatctgaaggcgcagtgatagaggactctctgctaatgggtgcagactattatgagacggagacggacaagaaagccctttctgagactggtggcattcccattggtattggaaagaatgcacacatcagaaaagcaataattgacaagaatgctcgtattggagaaaatgttaagataatcaatgtcgacaatatccaagaagcttcaagggagactgatggatacttcatcaaaagtggcattgtcactgtgatcaaggacgccttaatccctagcggaacagtcatataa</cdnaseq>|
| + | * Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba City, Ibaraki, 305-8572 Japan |
| − | AA = <aaseq>MAMMAMGAASWAPIPAPARAAAAFYPGRDLAAARRRRGAAARRP FVFTPRAVSDSRSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYR LIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP ENPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYQKFIQAHRETNADITVA ALPMDEERATAFGLMKIDDEGRIIEFAEKPKGEKLKSMMVDTTILGLDTERAKELPYI ASMGIYVFSKDVMLKLLRQNFPAANDFGSEVIPGATEIGMRVQAYLYDGYWEDIGTIE AFYNANLGITKKPVPDFSFYDRSAAIYTQPRYLPPSKVLDADVTDSVIGEGCVIRHCT INHSVVGLRSCISEGAVIEDSLLMGADYYETETDKKALSETGGIPIGIGKNAHIRKAI IDKNARIGENVKIINVDNIQEASRETDGYFIKSGIVTVIKDALIPSGTVI</aaseq>|
| + | * Faculty of Bioresource Sciences, Akita Prefectural University, Akita City, Akita, 010-0195 Japan |
| − | DNA = <dnaseqindica>3747..3863#3132..3251#2960..3058#2669..2780#2465..2568#2106..2285#1746..2015#966..1262#140..343#acacatcatcactgggacaaccaaagaaaaagaaaaaaaaagagaaaaaaagagggaacttttcacggccgctgaagcctctgacactccactgtagtgtgtcagtactccggccacctctctcggccgttgctctcccatggcgatgatggcgatgggcgcggcgtcctgggccccgatcccggcgccggcgagggcggcggccgcattctatcccggccgcgatcttgcggcggcgaggcggcggcgtggggcggcggcgaggaggccgttcgtgttcacgccgcgtgccgtgtcggactcccggagctcgcagacgtgcctcgatccggacgccagcacggtacgccgcgatctcgccgccggtgcccaaaaaaattctactcttccagcgctcgcttttttctttgcgttcacgagggagaaaagttcggatccttttgggttgggaaaatcgaagggtcgttcttgggattcgatgtgttgcggttattttactcgacacatttggatgagcgaaatgtgtttgatatgtttcttgtggggattcctgcgagtgcgaagtgtttgtttttttagagtgttttggtgtcgatttctcggtgattctatcagctgttgcgttcagtactctctgtgattcaagaaacggtggaaagatgatggtgacagtatctctagtttagttgttggatgaaatattgacatatctttaacggtggaaaggtgattgttagtgagaaccccataataattaattagtggaggatctatcgtggtccatggcttgaatttaataattggctccagatctgttgtagtacttttgagtttataatttattagattctgtggtagaactagaagtacagaacttggaactcaagagcatttcatctgttatctatatatagtctgatgatgatttgtattattatttttacatccaatttttaatcctgcagagtgttcttgggatcatccttggaggtggtgctgggacaaggctgtatccgctgacaaagaagagggcgaagccggcggtgccgttgggtgctaattacaggctcatagatatcccggtcagcaactgtctgaacagcaatgtgtcgaagatctatgtcctgacacagttcaactccgcgtcgctcaatcgtcacctctcgagggcctatggaaacaacattggtggttacaagaacgaggggtttgttgaagttcttgctgcgcagcagagcccagagaatcctaactggtttcaggtatcttggttaatctgtattaacttgccaaattttttatagtagtactgtattagtttgaattgactcggtaagtggtaatttttgtactatgcaggtactggatgtttctgcttctgtgtattattgaatggtctcgtttagctgcaaagatgcatgaatgccagttaaagtttatactttatagggtacaaagaaaagaaggggatacataattaatatgaacatacaccctgttttacggaacaaaagaaatattagggttaatgtactcctgttgattcactcttccatattttctcacatttatagttaagtgaaactgttcactagtttagatgttccaatgatttctttggaattgcaaactagagttaacattgatagatgagctcttaggttaccaactttcatgttatatggtttctgtatgacaataccttaaggacgctgcctaatttattttgtttctttctgtctcagggtactgcagatgctgtgcgacaatacttatggctatttgaggaacacaatgttatggagtttctcattttggctggagatcacctgtaccgtatggactaccaaaagttcattcaggcccacagagaaacaaatgctgatataaccgttgctgcgctgcccatggatgaagaacgtgctacagcatttggccttatgaagattgatgatgaagggaggatcattgaatttgcagaaaagccaaaaggagagaagttgaaatcaatgatggtaattgatgagtcatccgttgagaccatatgcaacctgatctgttgaagcatacatttcagtgattgtctgcatgttttgatcttgcaggttgacactaccatacttggccttgatactgagagggcaaaggaattgccttacattgctagtatgggaatctatgtttttagcaaagatgtgatgcttaagcttctccgtcaaaatttccctgctgcaaatgactttggaagcgaggttattcctggagcaacagaaattggaatgagggtacgctatgctcttgaaacttgtagcatgtagggaatttttatccttctctcagttcatgctgtaggttttgtgaagtttggtatgtaaactgcagttacatcatttattgtgaaatgttacttctttacttaatttttactttgcatgtttgcttatgctgctaatgtatttgataggtgcaagcttacttatatgatggttactgggaagatattggtactatagaggcattctacaatgccaacttggggataaccaagaaacctgtgccagattttaggtaaggtttacattttgcatggtgaaaacaagttacttttaaaagggtgcatttctgctgaattttcttcctatttttgagcaaacattattgtgtgcagcttctatgaccgttctgccgcaatttatacgcaacctcgatacttgcctccatcaaaagttcttgatgctgatgtgacagacagtgttattggtgaaggttgtgttattagagtaagtatccttttcagatgaattatcatagcgcttccttctatgatctgtggatagtattagatcataacatattaggaccttgagttattacttgttagtcgaacatttctttttcattgcttcaaaacagagaccctaaatttgttgacatgcctttccccctttattttggctagcattgcacaatcaaccattctgtggttggactccggtcctgtatatctgaaggcgcagtgatagaggactctctgctaatgggtgcagactattatgaggtaaaataaaacaaaactatactatattatggtgtattggtgttgtgggaacttaattgtgctttttgttcagacggagacggacaagaaagccctttctgagactggtggcattcccattggtattggaaagaatgcacacatcagaaaagcaataattgacaagaatgctcgtattggagaaaatgttaaggtatttcatatatatttatacttttggttgtcaatctgatgaagtgtgccttctgtattaactgatcaactattcattacttgaaagaaaagagagggacaagcatatttgtttgaatacaaacttggtactttctcatgctttttgttaaaggtggccttttgcaaatgtgcatcttgcatcactggtttgaaagccctttatcattaaaaaatactactatgtcatcatactttttccccctaaattatctttcttttcaaatgctatatgtcttttcttgccatgggtttttgccttgttgagtatggatctttaattatttacttactaagcacaaactgaaaaaatccaggcaacccatatggatcgatttacatattgtttctctcacttttccagagatgaccagttgatactgaactgaacaaaatgatgtgcaatgtttattgcattaattaatgatcaatcttatatgatctgttgcttgtacagataatcaatgtcgacaatatccaagaagcttcaagggagactgatggatacttcatcaaaagtggcattgtcactgtgatcaaggacgccttaatccctagcggaacagtcatataaaggcaaccaatcaccactgtacataaggttctctcaaattctcatatttattctatttagagcgtttggacatcaccaattcaccatgaaatgggaagcgtcttttattttccctcttacaaacaatttctaccaaaattggatcgactgccttgcttaatgctagaatttgcttagtagctggtaagcctcatatttatgcttaaataagtgattcttttgttctgtaatgcaggttgggccttgcagcatatggtgatctgatctccagtgcacatcaagcaatcaacttttaacgctgtggtttattccatgctgccagttcaccaagctctgcatcaacttgcaaggatatcataaaaaaaataaaaaataaaaacaggtgccacttaaaggcaccattttactgttactagtatgagcaaccgctctagagcttagaggtgttgtaagtccgaaaaccgtgtctgaaatgtgggtattttgatgtgtataatctttgtccttttgcatgatc</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069343.1 RefSeq:Os09g0298200]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Akihiro T, Mizuno K, Fujimura T. Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA. Plant Cell Physiol. 2005 Jun;46(6):937-46. PubMed PMID: 15821022. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | </references> |
| − | [[Category:Japonica Chromosome 9]] | + | |
| − | [[Category:Chromosome 9]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]] |
