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| − | {{JaponicaGene|
| + | The rice '''''Os03g0735000''''' was reported as '''''OsAPL1''''' in 2005 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os03g0735000|
| |
| − | Description = Similar to Glucose-1-phosphate adenylyltransferase large subunit 2 (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE S) (Alpha-D-glucose-1-phosphate adenyl transferase) (BLPL) (Fragment)|
| |
| − | Version = NM_001057719.1 GI:115455166 GeneID:4334020|
| |
| − | Length = 5201 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os03g0735000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:Os09g0298200.png|right|thumb|427px|'''Figure 3.''' ''Expression of rice AGPases in leaves, stems and roots during light/dark periods.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os03g0735000''''' '''''<=>''''' '''''OsAPL1''''','''''APL1''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| + | * '''''OsAPS1''''' encodes a large subunit of ADP-glucose pyrophosphorylase (AGPase). |
| − | AP = Chromosome 3:30862530..30867730|
| + | * AGPase catalyzes the conversion of glucose (Glc)-1-phosphate and ATP to ADP-glucose and pyrophosphate. |
| − | CDS = 30862875..30862976,30863220..30863280,30863684..30863790,30863885..30863989,30864230..30864316<br>,30864599..30864679,30864880..30864952,30865166..30865278,30865827..30865920<br>,30866078..30866133,30866217..30866300,30866596..30866688,30866797..30866970<br>,30867079..30867192,30867354..30867545|
| + | ===Expression=== |
| − | GCID = <gbrowseImage1>
| + | * '''''OsAPL1''''' was expressed later in seed development. |
| − | name=NC_008396:30862530..30867730
| + | * In order to clarify the effect of sugars and plant hormones on AGPase gene expression more precisely, a rice cell culture system was used. |
| − | source=RiceChromosome03
| + | * '''''OsAPL3''''' transcript significantly accumulated in response to increased levels of sucrose and abscisic acid (ABA) concentration in the medium; however, the transcripts of other AGPase genes did not show significant accumulation. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>| | + | ===Subcellular localization=== |
| − | GSID = <gbrowseImage2>
| + | * Based on the alignment analysis (Fig. 1) and subcellular localizations as predicted by programs (PSORT, ChloP, TargetP and iPSORT), '''''OsAPS2''''', '''''OsAPL2''''' and '''''OsAPL3''''' are extra-plastidial forms and '''''OsAPS1''''', '''''OsAPL1''''' and '''''OsAPL2''''' are plastidial forms of AGPase. |
| − | name=NC_008396:30862530..30867730
| + | |
| − | source=RiceChromosome03
| + | You can also add sub-section(s) at will. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | ==Labs working on this gene== |
| − | CDNA = <cdnaseq>atggcggcgatggacctgcgggtggccgccccggcctccgtggccgcggcggcgcggtgcggcacgagcctggcgaggccgtggcctgcccgggcggtgggaggaggaggaggaggaggaggacggggccggcgtctctccgtgcggacgtccgtcgcgaccaccgaggccgccgccgccgccgtgggcgcctcggaggacgcggcgctggaggcgcgggactcgaagacggtggtggcggtcatcctcggcggcggcgcggggacgaggctgttcccgctcaccaagcgcagggccaagcccgcggtgcccattggcggagcgtacaggctgatcgacgtgccgatgagcaactgcataaacagcggcatcaacaaggtgtacattctcacccagttcaactccgcgtcgctcaaccggcacctttcccgggcgtataacttcagcaacggcgtcgcgtttggagatggattcgtcgaggtcctagcagcaactcagacgcctggatcggagggaaagaggtggtttcagggtacagctgatgctgttcggcaatttgactggctttttgatgatgccaaagctaaagacatcgatgatgtgctgattctttctggtgatcatctctaccgcatggactacatggactttgttcagagtcatcggcaaagaggtgcagacatcagcatctgttgcttgcctattgatgatagccgggcatctgattttggtctaatgaagatagacgacacaggaagagttatcgcatttagtgaaaaaccaaaaggagatgatttaaaggcaatgcaagttgacaccactgttctaggcttaccacaggatgaagcaaaagagaagccatacatagcgtcaatgggggtttatatatttaagaaagagatacttctaaatcttttgagatggcgttttcccacagcaaatgactttggatctgaaatcattcctgcttcagcaaaagaaatcaatgtaaaggcatatcttttcaatgattactgggaagacataggaactataaaatcattctttgaagccaatctttctcttgctgaacagccaccgagattcagcttttatgatgctaataaaccaatgtacacatcacggagaaacttaccgccatctatgatcaataatagtaagatcactgattcaatcatttcccatggatgtttcttggatagctgcaggatagagcacagtgttgttggaatccgttctaggataggttccaatgtgcacctcaaggatacagtaatgcttggtgctgatttctatgagactgatctggaaagaggagaactgctggctgaaggaaaggttcctattggaatcggggagaatacaaagattcagaactgcataatagacaagaatgcgaggatagggaagaatgtaacaatttccaactctgagggtgtacaggaagcagataggacctctgaaggcttctacatccgatcaggcatcaccatcgtattaaagaactcgataattgcagatggattagtcatctga</cdnaseq>|
| + | * Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba City, Ibaraki, 305-8572 Japan |
| − | AA = <aaseq>MAAMDLRVAAPASVAAAARCGTSLARPWPARAVGGGGGGGGRGR RLSVRTSVATTEAAAAAVGASEDAALEARDSKTVVAVILGGGAGTRLFPLTKRRAKPA VPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLSRAYNFSNGVAFGDGFVE VLAATQTPGSEGKRWFQGTADAVRQFDWLFDDAKAKDIDDVLILSGDHLYRMDYMDFV QSHRQRGADISICCLPIDDSRASDFGLMKIDDTGRVIAFSEKPKGDDLKAMQVDTTVL GLPQDEAKEKPYIASMGVYIFKKEILLNLLRWRFPTANDFGSEIIPASAKEINVKAYL FNDYWEDIGTIKSFFEANLSLAEQPPRFSFYDANKPMYTSRRNLPPSMINNSKITDSI ISHGCFLDSCRIEHSVVGIRSRIGSNVHLKDTVMLGADFYETDLERGELLAEGKVPIG IGENTKIQNCIIDKNARIGKNVTISNSEGVQEADRTSEGFYIRSGITIVLKNSIIADG LVI</aaseq>|
| + | * Faculty of Bioresource Sciences, Akita Prefectural University, Akita City, Akita, 010-0195 Japan |
| − | DNA = <dnaseqindica>4755..4856#4451..4511#3941..4047#3742..3846#3415..3501#3052..3132#2779..2851#2453..2565#1811..1904#1598..1653#1431..1514#1043..1135#761..934#539..652#186..377#gtgtccctagtggaaagttgcacgagctcacgggggtcaggcgactaggcgaggagagaagaggagaggagaggagaggagaggtttggattgggaaggatcaccagctcaccacccgtttctctctccggcattgcgaggggaaggcggcgacgggaggcgcgcgcgggtgtagacgcgtagtgatggcggcgatggacctgcgggtggccgccccggcctccgtggccgcggcggcgcggtgcggcacgagcctggcgaggccgtggcctgcccgggcggtgggaggaggaggaggaggaggaggacggggccggcgtctctccgtgcggacgtccgtcgcgaccaccgaggccgccgccgccgccgtgggcgccgtcagtgcacatgctctctctctctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtcgcgcgcgcgcggtgcttgatttgtttttcgtggtgttgcagtcggaggacgcggcgctggaggcgcgggactcgaagacggtggtggcggtcatcctcggcggcggcgcggggacgaggctgttcccgctcaccaagcgcagggccaagcccgcggtgagtacagcgtacaaacaccttagtcccgtcgcggtttcttctgccgcaaaagattcagcaaatgcgagtaaattgtctcatggttgttaatttttgccattgcaggtgcccattggcggagcgtacaggctgatcgacgtgccgatgagcaactgcataaacagcggcatcaacaaggtgtacattctcacccagttcaactccgcgtcgctcaaccggcacctttcccgggcgtataacttcagcaacggcgtcgcgtttggagatggattcgtcgaggtgctaaatccagacagtataatgttcttctttacgggattgtgctactgttaatttggtgatctgatgaaaagggataacaaaaatggaacttgctctctaactcaggtcctagcagcaactcagacgcctggatcggagggaaagaggtggtttcagggtacagctgatgctgttcggcaatttgactggctttttgatgtacgtttttttatcagatatttgagatgtgcgatgcttacttttatcatcgatatggagcactatagccaatgcagtgactagaagtcatctatgtttaactttttactgcgccttctgacttctgttgcatatttgtgtgtttagaatcattcgtatctgtttacagtggttcaatttgaggaaaatcaaatgaacttttcaattatcccttgttatttgatcgtactattctactgaaaaacctcatcatgctccttacataattttaatgcatcgtgctatcgttttgtaggatgccaaagctaaagacatcgatgatgtgctgattctttctggtgatcatctctaccgcatggactacatggactttgttcaggtaattgtctgtacatacatcatttcttgtagttggctgttaaagtagtatatttgaattgattttgggtatccaatttacagagtcatcggcaaagaggtgcagacatcagcatctgttgcttgcctattgatgataggtgattcctgtaccatttcagtagcttcatccatgaacaatgaagtgacctctcataccaagttttagataaattgaattgttttatttggtaagagaaatatttggattttgaaaatacactactctctttcatttgtttatttcgtccttgtcagccgggcatctgattttggtctaatgaagatagacgacacaggaagagttatcgcatttagtgaaaaaccaaaaggagatgatttaaaggcaatggtaggtcatatatgtttattcatacgggaatggattctaaaccctcgaggggatatcccctcgtatatctttttctttcaaattcgatacaaatagttatgaaaaaatctgaaaaaaattgacaatgtagagtataatgatacctactaatccaccaaaattcaagttcaaattcgatctacacatcgagaaacaaaaaagacaaatttagatataaacagtacgctactattcatatgctgaatttgtcttttttatatctcgatgtgtgagttgagtttggacttaagattttgtggagttgtatatatgtgttgtatgaatgttgttaaatttttccagaatttttcataaccgtttagatggtttttaggtaaacgagggaacatcccctcgagggattagaatagtttccctattcataccacccatctgtcctatgtacatattggaatcatattctagatggcccaatgcaccagttagtgctgcacacaaagaaaataactgataatttcatcagacattctttatttttctttgtgcagcaagttgacaccactgttctaggcttaccacaggatgaagcaaaagagaagccatacatagcgtcaatgggggtttatatatttaagaaagagatacttctaaatcttttgaggtatgccaattcaactcaatggagctcacataaaaattcagtaaaatgctccatttaatcatctgactataaagtgtactttcattctaatgccaaacctcaatttcagtgatgtcaatagtataataaacaaaccagcttttttgttcttctgtttatgtggtattgattgctatcaggtcttaatctttaccgcaattgttgttaggtcagatggcgttttcccacagcaaatgactttggatctgaaatcattcctgcttcagcaaaagaaatcaatgtaaaggtaaggatttaacataataagttccatttggtagtgttctctaatattgcactattggcatcagatttacacaaatttattcaataataatactgcatatgtatgatgtattatttattttcttacaatcaacttcagtatcatgtcagaaactagccttgaacatctcaggcacagttgtaacctagaactcattgcaggcatatcttttcaatgattactgggaagacataggaactataaaatcattctttgaagccaatctttctcttgctgaacaggtatgctttactaatacaaaattgccattttatccgtattcctgcagtttatatccctctaataaatatgtaactgtacacactgcaaattgatactttatgttcaccatccttctagcaactcctgacttccttttccccaccgtattcatttatgttattaacttctacgtatagtatcatgatggtgatagtactacataggtacgaaattttctttttaaaacagatcaaatgaaaactctctgtaacttttgatcatttttgaattcacttatgcagccaccgagattcagcttttatgatgctaataaaccaatgtacacatcacggagaaacttaccgccatctatgatcaataatagtaaggtatgtgataccctatctgaactagcatgtatccctttctgtgatattttagttcccaaatattccttatgtcactttcgacgcatgtatccaattagcaattcatttaatcctggttatgtgcctttgctcacttagggaagttgcttattaatattaaatttagagggttcctttacccttcttttaaaatcaattcggttggcttgccatcttctaacactgtttaaaccattgcagatcactgattcaatcatttcccatggatgtttcttggatagctgcaggatagagcacagtgttgttggaatccgttctaggataggttccaatgtgcacctcaaggtcagatattttcattttcactgctagaagcataaaacaccaacggaatggccttccaaattacataaaatatttctgttccattgtcctgcaggatacagtaatgcttggtgctgatttctatgagactgatctggaaagaggagaactgctggctgaaggaaaggttcctattggaatcggggagaatacaaagattcagtatgcatgcaaatttacttcctagcttgttggcccaataatataataatataatactccctccatccataaaagttacacctattttacttttgagtttttctaaataagttgttcctatttgtagtatttgtgcatttaatacttaagcgaagagataaattaaatattttattagaacccaaggagttatctaaatactcattggttacatgcttgcatttactccttgattttgtaatatccaaggtgatttaatttctccttggtcttggtgtcaaaagtaatatatgtaacttttgtggatggagggagtacatcacttttacatgtttgtcttggttatcaatagttcaaaaaaatttattttactcatagtgtgtctcattattgtcctctgaaggaactgcataatagacaagaatgcgaggatagggaagaatgtaacaatttccaactctgaggtatgcattatctctattaccccttctaacatgcttctatgttttttttccctgaaacccgtttctattgtcgaaaatagttctataacttgatcaacactaataaaaatcacaaagtaccgagaaacgcccaggggtattccggctagctccacaaggtggtgggctagacgacctaggttcgaagcctcaccccttctaattatttgatattgtggttgtctgttgggtcttaaatttcagggtgtacaggaagcagataggacctctgaaggcttctacatccgatcaggcatcaccatcgtattaaagaactcgataattgcagatggattagtcatctgaggtggaataaagccctcccttatccaaccagaaaaagccagccatgaccatttgcggcaggaatagaataaaatcatcagagctctttgttcttagttgtgtacttagcattcaagagcttctgcatgtctgtacaaaatcattgtctcgtgaatctaccgtgtgtgttttcacactaaacacatggtcatgaagctcgaaaaaaaaaacaaaattttatgatctggggtattggttgttccatgtaatctgcaggcgaagaaaaccttacctatctacaggtgtactctctccgtcaaaaaaaaaaaaacttaatctagatgggaatttgacacaaccttgaac</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057719.1 RefSeq:Os03g0735000]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Akihiro T, Mizuno K, Fujimura T. Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA. Plant Cell Physiol. 2005 Jun;46(6):937-46. PubMed PMID: 15821022. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]] | + | </references> |
| − | [[Category:Japonica Chromosome 3]]
| + | |
| − | [[Category:Chromosome 3]]
| + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
