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| − | {{JaponicaGene|
| + | The rice '''''Os05g0580000''''' was reported as '''''OsAPL3''''' in 2005 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os05g0580000|
| |
| − | Description = Similar to ADP-glucose pyrophosphorylase (EC 2.7.7.27) (Fragment)|
| |
| − | Version = NM_001062959.1 GI:115465648 GeneID:4339718|
| |
| − | Length = 5484 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0580000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:Os09g0298200.png|right|thumb|427px|'''Figure 3.''' ''Expression of rice AGPases in leaves, stems and roots during light/dark periods.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os05g0580000''''' '''''<=>''''' '''''OsAPL3''''','''''APL3''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| + | * '''''OsAPS1''''' encodes a large subunit of ADP-glucose pyrophosphorylase (AGPase). |
| − | AP = Chromosome 5:28953374..28958857|
| + | * AGPase catalyzes the conversion of glucose (Glc)-1-phosphate and ATP to ADP-glucose and pyrophosphate. |
| − | CDS = 28953713..28953814,28953907..28953967,28954070..28954176,28954275..28954379,28954462..28954548<br>,28954720..28954800,28954989..28955061,28955149..28955261,28955345..28955438<br>,28955539..28955594,28955685..28955771,28955881..28955970,28956084..28956254<br>,28956658..28956777,28956887..28957099|
| + | ===Expression=== |
| − | GCID = <gbrowseImage1>
| + | * '''''OsAPL3''''' was predominantly expressed in the middle phases of seed development, |
| − | name=NC_008398:28953374..28958857
| + | * In order to clarify the effect of sugars and plant hormones on AGPase gene expression more precisely, a rice cell culture system was used. |
| − | source=RiceChromosome05
| + | * '''''OsAPL3''''' transcript significantly accumulated in response to increased levels of sucrose and abscisic acid (ABA) concentration in the medium; however, the transcripts of other AGPase genes did not show significant accumulation. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>| | + | ===Subcellular localization=== |
| − | GSID = <gbrowseImage2>
| + | * Based on the alignment analysis (Fig. 1) and subcellular localizations as predicted by programs (PSORT, ChloP, TargetP and iPSORT), '''''OsAPS2''''', '''''OsAPL2''''' and '''''OsAPL3''''' are extra-plastidial forms and '''''OsAPS1''''', '''''OsAPL1''''' and '''''OsAPL2''''' are plastidial forms of AGPase. |
| − | name=NC_008398:28953374..28958857
| + | |
| − | source=RiceChromosome05
| + | You can also add sub-section(s) at will. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | ==Labs working on this gene== |
| − | CDNA = <cdnaseq>atgcagttcagcagtgtgtttcccttagagggtaaagcatgcgtgagcccaataaggagaggtggtgagggctcagctagtgatagattgaagatcggggacagtagcagcatcaagcatgatagagcagtgaggaggatgtgtcttggttataggggcaccaaaaacggtgcacaatgtgtgctcacctcagatgctggcccagacactcttcatgtccgaacatcattccggaggaactttgcggatccaaatgaggttgctgctgttatattgggtggtggcaccgggactcaactttttcctctcacaagcacaagggccacgcctgctgttcctattggaggatgctataggcttatcgatatccccatgagcaactgtttcaacagtggcataaacaagatattcataatgactcaattcaactcagcatctcttaatcgtcacattcatcgtacgtaccttggtggtggaatcaactttactgatggatctgttgaggtattagccgctacacaaatgcctggggaggctgctggttggttccagggtacagcagatgcagttagaaaatttatctgggttcttgaggactattacaagcataaagctatagaacacattttaatcttgtcaggagatcagctttatcgtatggactacatggagcttgtgcagaaacatgttgatgacaatgctgacattactttatcatgtgctcctgttggagagagtcgagcatctgactatggactagtgaagttcgacagttcaggccgtgtaattcaattttctgaaaaacccaagggcactgacttggaagcaatgaaagtggataccagctttctcaattttgccatagacgacccgactaaatttccctacattgcttcgatgggagtttatgtcttcaaaagagatgttcttttaaaccttctaaagtcaagatatgcagaactacatgactttgggtctgaaatcctcccaagagctttacatgagcacaatgtacaggcatatgtcttcgctgactactgggaagacattggaacgatcagatcgttctttgatgcaaacatggccctttgcgagcagcctcccaagtttgagttttatgatccaaaaactcccttcttcacttcacctcgatatttgccgccaacaaagtcagataaatgcaggattaaagatgcgataatttcccatggctgtttcttgcgtgaatgtaccatcgagcattcgatagttggagtccgctcacgccttaactctgcatgtgagctcaagaataccatgatgatgggtgcggatttgtacgaaactgaagatgaaatttcaagactactgtcagaaggcaaggtccccattggtgtaggggaaaacacaaagataaacaactgcatcatcgacatgaacgcgagggttggaaggaacgtggtcatcacaaacagcgagggtgtccaagaaagtgatcggcctgaggaagggtactacataaggtcgggaatcgtggtgatcctgaagaacgcgaccatcaaggacgggaaggtcatatag</cdnaseq>|
| + | * Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba City, Ibaraki, 305-8572 Japan |
| − | AA = <aaseq>MQFSSVFPLEGKACVSPIRRGGEGSASDRLKIGDSSSIKHDRAV RRMCLGYRGTKNGAQCVLTSDAGPDTLHVRTSFRRNFADPNEVAAVILGGGTGTQLFP LTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFIMTQFNSASLNRHIHRTYLGGGI NFTDGSVEVLAATQMPGEAAGWFQGTADAVRKFIWVLEDYYKHKAIEHILILSGDQLY RMDYMELVQKHVDDNADITLSCAPVGESRASDYGLVKFDSSGRVIQFSEKPKGTDLEA MKVDTSFLNFAIDDPTKFPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALH EHNVQAYVFADYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSD KCRIKDAIISHGCFLRECTIEHSIVGVRSRLNSACELKNTMMMGADLYETEDEISRLL SEGKVPIGVGENTKINNCIIDMNARVGRNVVITNSEGVQESDRPEEGYYIRSGIVVIL KNATIKDGKVI</aaseq>|
| + | * Faculty of Bioresource Sciences, Akita Prefectural University, Akita City, Akita, 010-0195 Japan |
| − | DNA = <dnaseqindica>5044..5145#4891..4951#4682..4788#4479..4583#4310..4396#4058..4138#3797..3869#3597..3709#3420..3513#3264..3319#3087..3173#2888..2977#2604..2774#2081..2200#1759..1971#cccccacatggggcgggcgaaacgccaaacgaaacgaggcgctgccctgccaccttcgcctcacgaacgccagcctcgctgtttcccctccctctcgcaccgctcgttcccgtttgccttctttctctcctcccccccgttcagcttcccgttcaggttcaggcaatcacgcctcctctcctctcctctcctctccttcttcactccactccaacgccccacgccctcccccgctttataagggggagctccacatcaccacccttcccacaccatcgcggcagccaccgcatctttcctcctctttccctggagccatttcctcccctaaagggcctttccttttcttgatctctcttctatcttcgatccatccatccatccggccatccttcctaggtaataacatttcttcctacctctctggacgctgtcttccctgcgcatgtgtgtgcgtgtgcattgtggatgtttctttgatgattctggtggaaaggttgtgggcgcgttctcgcctctcggagttttgcgtgtgctgtttggtcctgaaattgggtggcgaaatgctttctctgttgatgcgtccaagaaatgcacgcgtatctagttttgttgctttgaaatttcgcggcaagtttgggcggtgtgtttctgcaagttttgatatgaatttccgggatggagagcgtgggtggttcttaatttctatattctcatggcatgcagataaaatttcctgaacttaatttgttgcaacaattgttattggcgtataacggtgcatatttatttggatgcgattttgtgcacctatggctgtatcgagcctgtttcttgatgtttgcggtggattgggggtgatttctcccccatttgttttcattttccaacaaatatagggtcgttcttggatcctgtgcaccgtgctcttctctatgcatatttttggcttctgaccagcttcgtttcatcatttctgtccttagaataatcgaaaaacttgcagctttctcgcgttgagaaaagctcccgttcccatttggatgtaaagctacccaaatcccatttggttgtgaaatcctcctgtgcatatgttgtgctttgctctcctgacgacaagaaaaaaaatgttccgtcaagcctaaaaaaaaagattagttttctgaagattcagtttggggcgtcggtgttcgactttgcggctatttctaccaacttgtcatcactcactccgttcaggtatagtagttcatttataaagcgttctgttctactttgcgtcgtcgtcggttcagattttcggaagaagtgagattctaatcccgggtgagctttagatcttgtgattcacatgactacgtcctcaaaagaaggcataaagtcttttctatagctttcttggttgatgcgtagtactactacttcgttccttcgctttcaaaatcttggtggtgtatccatcaagggcccctacactgtcctgtattccgtgatcattgttctgatcccttacactgtcctaattacttatggaccgtgaaaaaagatagctctttttttttgcttgactttgtagttcttttttcagaagcttagagccttagaccaaagaaaggatggtcactttccttgctctaatctagtttttggcctgtatctgccttgtgatgctaaaaatattacatagtgaagaggtatccgagagtagttaattgttaaaggctattgactttgttaccttgcaggtgaatttcaacgatgcagttcagcagtgtgtttcccttagagggtaaagcatgcgtgagcccaataaggagaggtggtgagggctcagctagtgatagattgaagatcggggacagtagcagcatcaagcatgatagagcagtgaggaggatgtgtcttggttataggggcaccaaaaacggtgcacaatgtgtgctcacctcagatgctggcccagacactcttgtaagtttcatactgtcagttatcaaattggtggtttctcactgtccttttgctatcgaatgctattagctgttagcatatctaaaccctgtatgaaaaattattacagcatgtccgaacatcattccggaggaactttgcggatccaaatgaggttgctgctgttatattgggtggtggcaccgggactcaactttttcctctcacaagcacaagggccacgcctgctgtaagatgatacattcaatttctgaggtttattaagtttcaagttgataggctttttgcagtaaaggggtaccatttgcaaggaattctcagtttgatttgcctgctttgagtttgacaagtcgacatgaatcagaagcatggcaattgatatgcatgacaccagttaaaagtttagctaattcagtagcatgtttgagcattgtgtataaattagtatttggctgtggcccaatgattttggtagctggtccccatggtgccctccacggttccactttagccaacatgatttcttttcaagctcaacgctatcaaagactatcatgtggcttgttcagagttcagtcatcttgaaattcctggcctaatctttgtttctttccttttgttgcataacataggttcctattggaggatgctataggcttatcgatatccccatgagcaactgtttcaacagtggcataaacaagatattcataatgactcaattcaactcagcatctcttaatcgtcacattcatcgtacgtaccttggtggtggaatcaactttactgatggatctgttgaggtaattcaccttgacctgtgatgcttatgttcttcgatgatttgcgtggttgttgacttggtgaagaaacagtcacagctcacattaactgaaatgatttttgccaattgaaggtattagccgctacacaaatgcctggggaggctgctggttggttccagggtacagcagatgcagttagaaaatttatctgggttcttgaggtaaatactgtttagaagcacacggtggatctgcagctcatacttggatctgtatcactaaagtaatactcactatgttgtatgtaatgtttctgatgtatctgttcaggactattacaagcataaagctatagaacacattttaatcttgtcaggagatcagctttatcgtatggactacatggagcttgtgcaggtttgtcctggcctcattcttctgtacttttccacatgcttttcttttgaactggctgactcttcaatatatgccattcaccgtttgcagaaacatgttgatgacaatgctgacattactttatcatgtgctcctgttggagagaggtatatcgattgtacaatattccaaaagttagataatattatcagcatttgtcctcagaaaatgcagagcatcctgatttggttttctttattatggtagtcgagcatctgactatggactagtgaagttcgacagttcaggccgtgtaattcaattttctgaaaaacccaagggcactgacttggaagcaatggttagaattaaccttatcccatactcagatatatatttgaacttaattgcagtatctgaagtataagtcattgatcattgcagaaagtggataccagctttctcaattttgccatagacgacccgactaaatttccctacattgcttcgatgggagtttatgtcttcaaaagagatgttcttttaaaccttctaaagtaagaatcttattgcagtagtatggtttctcctacagggcacatgctatagaaatatagaattgtagtctaacagtgtcactttaggtcaagatatgcagaactacatgactttgggtctgaaatcctcccaagagctttacatgagcacaatgtacaggtaaaagtttttaagcttgagcactattatgtgatttcctttcacctgtttgggaagtcatgcctcatgttcaattcagtaatagtccacattcagtctgaattgcctacttgcaccaaatgtagtttgtgcaatcatgtccgccttgtggcgtgaactgaacatccatctgcttttgttgtttataggcatatgtcttcgctgactactgggaagacattggaacgatcagatcgttctttgatgcaaacatggccctttgcgagcaggtatttggtctgcttcaaaattttagcactctcaaactgtagaggtagttggattgtaacacatctgaataatgcatttaatagatctgtacaattgttaagtacagttcagactttgcaacatatttaatactttcattctctatttactcacaagttcctccattgcagcctcccaagtttgagttttatgatccaaaaactcccttcttcacttcacctcgatatttgccgccaacaaagtcagataaatgcagggtatgagtcgcatggaatgaactttctatatcaaactttaatatgcgtgtttcatatctgatttcggaatttgtgcgtgcagattaaagatgcgataatttcccatggctgtttcttgcgtgaatgtaccatcgagcattcgatagttggagtccgctcacgccttaactctgcatgtgagctcaaggtactctctttcaccaatgaaattaaactgaatccatatgcatatgcctgtatagcataattgaacaacactgggattgttgcaaacaacacctgcagaataccatgatgatgggtgcggatttgtacgaaactgaagatgaaatttcaagactactgtcagaaggcaaggtccccattggtgtaggggaaaacacaaagataaagtgagatactgacctgaaggcttgaaccacaatgcattatgaacacatctagcaatatcctgtttcgagcgcgatctaaacccgtcttttgatgcattgtagcaactgcatcatcgacatgaacgcgagggttggaaggaacgtggtcatcacaaacagcgaggtaagcgatcaagcgaaaaggaattccaaagttgcaacctcccaacccatgtttcatacaaaattctgaacactgcaacctgttgctgatagggtgtccaagaaagtgatcggcctgaggaagggtactacataaggtcgggaatcgtggtgatcctgaagaacgcgaccatcaaggacgggaaggtcatataggagagctcgctgatgccacagatctctgaaccctgaacctgcaaatgcagtgcagtgcgtcttttcttgaggggttaggacatgcaagctcgttgattccacatggcagagaactcgagggaagatcccaggaagacggatgatcgagaaagattgtgtagtactagcagttcttcgctcgttaaaatgtgtgtactaaataactaataagctgccccgagtgaagtagcagcagcaactttttggagggtcgttggtgcatctcatgtgtaaataaactcaaaactggtaaaaaaatgtatccatcatgccattatctccattttctgtttcgctgct</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062959.1 RefSeq:Os05g0580000]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Akihiro T, Mizuno K, Fujimura T. Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA. Plant Cell Physiol. 2005 Jun;46(6):937-46. PubMed PMID: 15821022. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]] | + | </references> |
| − | [[Category:Japonica Chromosome 5]]
| + | |
| − | [[Category:Chromosome 5]]
| + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
