Difference between revisions of "Os01g0208700"

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Please input one-sentence summary here.
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The rice '''Os01g0208700''' was reported as ''' Osppc4 ''' in 2010 <ref
  
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name="ref1" /> by researchers from the Japan.
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<br>
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''Os01g0208700 <=> Osppc4 '''
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<br>
 
===Function===
 
===Function===
Please input function information here.
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*Osppc4 was expressedinallorganstestedandshowedhighexpressionintheleaves.
 
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<br>
 
===Expression===
 
===Expression===
Please input expression information here.
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*Osppc4 was expressedinallorganstestedandshowedhighexpressionintheleaves.Its expression in the leaves was confined to mesophyll cells, and Osppc4 accounted for approximately one-third of total PEPC protein intheleafblade.
 
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<br>
===Evolution===
 
Please input evolution information here.
 
  
You can also add sub-section(s) at will.
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===Mutant===
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*Knockdown of Osppc4 expression by the RNAi technique resulted in stunting at the vegetative stage, which was much more marked when rice plants were grown with ammonium than with nitrate as the nitrogen source.Comparisonofleafmetabolomesofammonium-grownplants suggested that the knockdown suppressed ammonium assimilation
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and subsequent amino acid synthesis by reducing levels of organic acids, which are carbon skeleton donors for these processes.
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<br>
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*Photobiology and Photosynthesis Research Unit, National Institute of Agrobiological Sciences, Kannondai, Tsukuba 305-8602, Japan;
 
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*RIKEN Plant Science Center, Yokohama, Kanagawa 230-0045, Japan
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<br>
 
==References==
 
==References==
Please input cited references here.
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<references>
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<ref name="ref1">
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Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation
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</ref>
  
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</references>
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<br>
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]
GeneName = Os01g0208700|
 
Description = Similar to Phosphoenolpyruvate carboxylase (Fragment)|
 
Version = NM_001048893.1 GI:115435199 GeneID:4325531|
 
Length = 10000 bp|
 
Definition = Oryza sativa Japonica Group Os01g0208700, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
 
AP = Chromosome 1:5898541..5908540|
 
CDS = 5898699..5899001,5899104..5899498,5899599..5899683,5899790..5900012,5900111..5900214<br>,5900511..5900601,5905894..5906048,5906221..5907612,5907953..5908249<br>|
 
GCID = <gbrowseImage1>
 
name=NC_008394:5898541..5908540
 
source=RiceChromosome01
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008394:5898541..5908540
 
source=RiceChromosome01
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atgatctccctccactccgcccccttcaccctcctcgtaaagctccccggccggaggaggagcggtcttacgccgccgaggtgcgccgtccggggagccgggaacgtgtcgtcggcggcggtgcgggagatggcggtcgcggaggggcggcggcagcatgagtactccatcgacgcacgcctccggcagctcgcgccggagaaggtgtccgccgacgaccgcctcgtcgactacgagaccctcctcgtcgcgcgcttcctcgacatcctcgaggacctccacggcggcgacttcagacaagtggtggaggattgcctgaggctgtccggggagtaccagagcgagggcgacccggcgaggctgggcgagctgggcggcctcctgacgagcctggacgtgggcgacgccatcatggtggcgagctccttctcccacatgctcaacctggccaacctcgccgaggagatccagatggtgtaccgcaagaaggcggaggcgagccggcgcggggacttcgtcgacgaggcctccgcgcccaccgagtccgacatcgacgagacgttccagcgcctcgtccgcggccttggcaagtccccccgcgaggtgttcgatgcgctccgcagccagaccatcgacctcgtcctcaccgcccaccccacgcagtccgtcaggcgttcactcctccagaagcacgcaagcattaggagctgcctgacacagctctgcggcgagggcatctccgacaacgaggagcaggagatcgacgaggcccttcagagagagattctcgcggcgttcaagacggacgagatccggcggacgccgccgacgccgcaggacgagatgcgcgccgggatgagctacttccacgacaccatctggaacggcgtgcccaagttcctccggcgcgtcgacacagcgctcaagaacatcggcatcgacgagcgcctcccctacaacgcccccctcatccagttctcctcatggatgggcggcgatcgcgacgggaatccgagggttacaccagaggttaccagggacgtgtgcctgcttgccaggatgatggctgccaacatgtacttctccaagatggccgatttgatgttcgagctctccatgtggcgctgcaacgacgagctccgagctcgtgccaacgagttgcaccggaagtcctcaaggaagtacgccaaatactacattgagttttggaagaagatttctccaggagaaccttaccgcattatactcggcgatgtgagggacaagctgtacaacacctgcgagcgtgctcgccagatcttgtcgaagggaatttctagcattcctgaagaccagacttacaccaatgtcgagcagttcttggagccgcttgagctgtgctaccgatcgctgtgcgactgcggcgacaagctgatcgccgacggcagactgctcgacttaatgcggcaggtctccaccttcggcctctccctcgtcaagctcgacatccggcaggagtcggagcgccacaccgacgccatggacgcgatcaccacgcacctcggcatcggctcctaccgggagtggcccgaggagcggcgccaggagtggctcgtctccgagctccgcggcaggcgcccgctcttcggccccgacctgccgcagtccgaggaggtcgccgacgtgctcggcgcgttccgggtcatcgccgagctccccgccgacagcttcggcgcgtacattatctccatggccaccgcgccgtccgacgtgctcgccgtcgagctgctgcagcgggagtgcggcgtcaagaagcccctgagggtcgtcccgctgttcgagaagctcgccgaccttcagcaggcgcgcgccaccatggagctcctcttctccgtcgactggtacaaggagcggatcgacgggaagcaggagatcatgatcgggtactccgactccggcaaggacgccggccggctgtccgcggcgtggcagctgtacaaggcccaggaggagatcgtcggcgtggcggagcggcacggcgtgaagctgaccatcttccacggccggggcggcaccgtggggcgcggcggcgggccgagccacctcgccatcctgtcccagccgccgaacaccgtcaatggctcgctccgcgtgactgtccagggcgaggtcatcgagaagtcgttcggcgaggagaacctctgcttccggacgctgcagaggttcacggcggcgaccctggagcacggcatgaacccgccggtgtccccgaagcccgagtggcgccgcctgctcgacgacatggcgacggtggccactgacgagtaccgctccatcgtgttccaggagccgcgcttcgtggagtacttccgcgccgccacgccggagacggagtacgggcggatgaacatcggcagccggccgtcgaagcggaagcccggcggcggcatcgagtcgctgcgcgccatcccgtggatcttcgcgtggacgcagacgcggttccacctccccgtgtggctgggcttcggcgccgcgttcaggcacgccatgcagcagagcgacgccggcggcggcctcgccacgctccgcgagatgtacgacgagtggcccttcttccgcgtcaccatcgacctcctcgagatggtcttcgccaagggcgaccccggcatcgccgcactctacgacgagctcctcgtccccgacgacctacgtccattcggcgagcagctcagagccaactacgtcgagacacagcgcctgctcctgcaagttgctgggcacaaggatctcctggagagtgatccgtacctgaggcagcggctgatgctgcgggactcgtacatcacggcgctgaacgtgtgccaggcgtacacgctgaagcggatccgggacggcgggttcaggccggagacgcggccgccgctgtcgaaggagcttctgggctcgtcggcggtggcggagaagctggtgaagctcaacccaaacagcgagtacgaccccgggctggaggacacgctcatcctcaccatgaagggcatcgccgccggcatgcagaacacgggctga</cdnaseq>|
 
AA = <aaseq>MISLHSAPFTLLVKLPGRRRSGLTPPRCAVRGAGNVSSAAVREM                    AVAEGRRQHEYSIDARLRQLAPEKVSADDRLVDYETLLVARFLDILEDLHGGDFRQVV                    EDCLRLSGEYQSEGDPARLGELGGLLTSLDVGDAIMVASSFSHMLNLANLAEEIQMVY                    RKKAEASRRGDFVDEASAPTESDIDETFQRLVRGLGKSPREVFDALRSQTIDLVLTAH                    PTQSVRRSLLQKHASIRSCLTQLCGEGISDNEEQEIDEALQREILAAFKTDEIRRTPP                    TPQDEMRAGMSYFHDTIWNGVPKFLRRVDTALKNIGIDERLPYNAPLIQFSSWMGGDR                    DGNPRVTPEVTRDVCLLARMMAANMYFSKMADLMFELSMWRCNDELRARANELHRKSS                    RKYAKYYIEFWKKISPGEPYRIILGDVRDKLYNTCERARQILSKGISSIPEDQTYTNV                    EQFLEPLELCYRSLCDCGDKLIADGRLLDLMRQVSTFGLSLVKLDIRQESERHTDAMD                    AITTHLGIGSYREWPEERRQEWLVSELRGRRPLFGPDLPQSEEVADVLGAFRVIAELP                    ADSFGAYIISMATAPSDVLAVELLQRECGVKKPLRVVPLFEKLADLQQARATMELLFS                    VDWYKERIDGKQEIMIGYSDSGKDAGRLSAAWQLYKAQEEIVGVAERHGVKLTIFHGR                    GGTVGRGGGPSHLAILSQPPNTVNGSLRVTVQGEVIEKSFGEENLCFRTLQRFTAATL                    EHGMNPPVSPKPEWRRLLDDMATVATDEYRSIVFQEPRFVEYFRAATPETEYGRMNIG                    SRPSKRKPGGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFRHAMQQSDAGGGLATLR                    EMYDEWPFFRVTIDLLEMVFAKGDPGIAALYDELLVPDDLRPFGEQLRANYVETQRLL                    LQVAGHKDLLESDPYLRQRLMLRDSYITALNVCQAYTLKRIRDGGFRPETRPPLSKEL                    LGSSAVAEKLVKLNPNSEYDPGLEDTLILTMKGIAAGMQNTG</aaseq>|
 
DNA = <dnaseqindica>159..461#564..958#1059..1143#1250..1472#1571..1674#1971..2061#7354..7508#7681..9072#9413..9709#agcagccggtgacaccacaaaatcctctcgcgctctcgctcgcgtctcctccccctcccccactccaacgctttaaaaaaaccgggggaaatggcgtgcccgcgcctacgcctcgccgtgcagccgcgcgcgcggtataaattcgcacgcgagccgcgatgatctccctccactccgcccccttcaccctcctcgtaaagctccccggccggaggaggagcggtcttacgccgccgaggtgcgccgtccggggagccgggaacgtgtcgtcggcggcggtgcgggagatggcggtcgcggaggggcggcggcagcatgagtactccatcgacgcacgcctccggcagctcgcgccggagaaggtgtccgccgacgaccgcctcgtcgactacgagaccctcctcgtcgcgcgcttcctcgacatcctcgaggacctccacggcggcgacttcagacaagtggtacggaaacccactcaatttcttctcgtttgatcgtgtcgatgtgctgctctgcactgcgagaatgacgaggatttaacggcgccatgtatggcggcgtaggtggaggattgcctgaggctgtccggggagtaccagagcgagggcgacccggcgaggctgggcgagctgggcggcctcctgacgagcctggacgtgggcgacgccatcatggtggcgagctccttctcccacatgctcaacctggccaacctcgccgaggagatccagatggtgtaccgcaagaaggcggaggcgagccggcgcggggacttcgtcgacgaggcctccgcgcccaccgagtccgacatcgacgagacgttccagcgcctcgtccgcggccttggcaagtccccccgcgaggtgttcgatgcgctccgcagccagaccatcgacctcgtcctcaccgcccaccccacgcagtccgtcaggcgttcactcctccagaagcacgcaaggttaattacaagggcactactgatgcagtgatatgcttcctttcacttgatcattgacgtgttttgctgatggatttgtgaattgtgatcattgtttcagcattaggagctgcctgacacagctctgcggcgagggcatctccgacaacgaggagcaggagatcgacgaggcccttcagagagaggtgctacgacaactctcgagcaatcaatctcgtctcaaatttgcgactgatcgtgtcgtgtaatcactaatcagatggagatgtgttcgtcgggtcgaattcgcagattctcgcggcgttcaagacggacgagatccggcggacgccgccgacgccgcaggacgagatgcgcgccgggatgagctacttccacgacaccatctggaacggcgtgcccaagttcctccggcgcgtcgacacagcgctcaagaacatcggcatcgacgagcgcctcccctacaacgcccccctcatccagttctcctcatggatgggcggcgatcgcgacggtagctaagctatccaatccatccattttcaaaatttgagatgagaggtgaggaatttaatctgcaagatcgtcttcctcgtgaattcgacggtgcagggaatccgagggttacaccagaggttaccagggacgtgtgcctgcttgccaggatgatggctgccaacatgtacttctccaagatggccgatttgatgttcgaggtgcttgctgctctgaattttagatttgaatttctcagtacagacattgttaattcggatttcatccctggaggggatattccctcgtttcgtgtatgccacctaaaaagttataaaaaaattgaaaaaatttggtataaaatatatcacttcacaaacatgtaaaaccaaattcacttctacaagtggcctgtggctctgaacttctagtttatcactgttatgctatttgaagcgctggcctgtggcctctgaatgcgcatttgcttctgagttctgaccttctgtctctgtagctctccatgtggcgctgcaacgacgagctccgagctcgtgccaacgagttgcaccggaagtcctcaaggaagtacgccaaatactacattggtatgatgcttgattgattttatctatctagcttgaaaaggagtaccacattcgctgtggagactagaaattcccatattaatcggagaaaaaataaaaaagaaaaggagagtccaagtagaaatacaatctaaaaatagctgaaattcggaattaaaaataagcaatattgaaagaagtttccatataagaacccaatgcgagattaatctaaattcgaaataaaaataaaataaaatccaaaattagaaaaaggaaaggagaatctaagtaggaatacaatttaaaaatagctgaaattcgaaattaaaaaataagcaatattgaaagaagtttccatataagaatccaatacgggattaatcaaaattcgaaataaaaataaaataaaatccaaaattagaaaagaaaaggagagtccaagtaggaatacaatataaaaataagcaatattgaaagaagtttctgtataagaacccaatacgagattaatcaaaattctaaataaaaataaaataaaatccaaaattagaaaaagaaaggagagtccaagtaggaatacaatctaaaaataactgaaaattggaattaaaaataagcaatattgaaagaagtttccatataagaacccaatacgagattaatcaaaattcgaaataaaaataaaataaaatacaaaattagaaaaggaaaggagagctcaagtaggaatacaattttgaaacaactgaaattgaaaataaaaaattaaaacattaaaagaacataatacggtagtaactatttttttaaaaaaataaattatgaaattagaaaaagaaaaataagatttaaattaggaatacaatttataaataactaaaatttgtgataaaaataaagactattgaaaaaaaagaccatctaaaacacatgatgagataaattaagtaacatgcctataaaggagtagagtggtggcggttgatatgacatataaaaattgttaataaaacaccagatagaatcctaatgacgattaaaaggaggaacgttgaacgttaggtaggccgtaaagcaaacaagtaaggcacttgctgggacttctagaaagtaaaaaaaaaaacccattgataatcatattcgatttttaaaatctcaatgacaataaaaatgagaagcagcgggcgagatgtataggagtatagttgcagagccgccgacggttgacgggacttctataaaattaaaaatgaattccaacgatagttatgttcgatttttagaatcacaataacaataaaagagtaggcaacggacgggctgtagaggggcatagtgacatcgtttgatggggcttctaaaaattataaaaaataaaactgcaagtccaatttttaaaggttccgaacttccaaaaagtaaaaaaacccaatgataatcatgttcgattttaaaatctcaatgacaataaagaaagtaggcagcgggcgagccgtagaggagtacaatggcaaagccgctgatggtttggcgagacttctagaaagtaaaaatgaacccaaacgataattatgtttgatttttaaaatctcaatgacaataaagagaagaaacagtggacgggccgtagaggagtataaggtaacgtttgacgggacatctagaaattataaaaaaaaactcaacgtgacaataaactctaaaaactataaaatccaatttttaaaggttccaacaagaatgaatagaaatagtggtagatcgagcaagcaaataaaaaaggaaatgacataaggggtagcaactggtgtgacttttaaaaactatataattagaaacacgaggatgataaggtttggtcttttaaagtcttaagacaatgagatagctatttaataaattttaagtaaaatcatactaaaaaatatatgattttgtttgggtgctagccgcgcaattgcgcgggccacccagctagtttgttataaaaccggccccgaaatcacatcggaaaccaaacgcggaagaaacgccataggagatccaaacatgatgacgacaccgaggcacgatatttgataacggagttcagccgaagcctacatctccggggcactgattacgggcgctcctccccgatccagcatattacagcgtatcagagttacaatgacttacggccggtcgctgccggcagccgctccctctcactatgctaagtcgccatgcagttacaacaggcacgcccctctatttatgagagatcctatgatagagtccgactcatactctagtcctacacctattacaactccaagtcctaaactgtaaccgactacgtacacatatttgacacaaactctaacaaactccaccttggcgaatatgccacgccaacctgaatctgttacttgctcgaacctccgtgtacccggacttgagttggtcctttttcgccgctcatgccgagctgccccgacaagcctccaccaggctcaccgtaaacaagagactccgctatccttgtaatttcttcctcctaactccacctgcaacagtgctccaccttctctcatatcaccatagtcgtcttgccaaatgaaattgaattccttcctagctgtcacatcatagactctccgaagaccatgttcacctccatcttccgtcttaaatttgacttgatctaatccatggccagataacagatgtcatcaccaaaatagataaatcaaactcaccagacatgaagagaaccctttcttccttgtcgtcttataaaccaagctaattaatccaacatccacgctttcccgcatccgtagactgaattccggatagtttgaga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cctggttctagcttgaaccgtgatcactgttttctttcagtaacgtagcagattaacctggagtggggatatacctgagaattcagcttcccaagcatatctttttttg</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001048893.1 RefSeq:Os01g0208700]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 1]]
 
[[Category:Chromosome 1]]
 

Latest revision as of 10:19, 13 November 2016

The rice Os01g0208700 was reported as Osppc4 in 2010 [1] by researchers from the Japan.

Annotated Information

Gene Symbol

  • Os01g0208700 <=> Osppc4


Function

  • Osppc4 was expressedinallorganstestedandshowedhighexpressionintheleaves.


Expression

  • Osppc4 was expressedinallorganstestedandshowedhighexpressionintheleaves.Its expression in the leaves was confined to mesophyll cells, and Osppc4 accounted for approximately one-third of total PEPC protein intheleafblade.


Mutant

  • Knockdown of Osppc4 expression by the RNAi technique resulted in stunting at the vegetative stage, which was much more marked when rice plants were grown with ammonium than with nitrate as the nitrogen source.Comparisonofleafmetabolomesofammonium-grownplants suggested that the knockdown suppressed ammonium assimilation

and subsequent amino acid synthesis by reducing levels of organic acids, which are carbon skeleton donors for these processes.

Labs working on this gene

  • Photobiology and Photosynthesis Research Unit, National Institute of Agrobiological Sciences, Kannondai, Tsukuba 305-8602, Japan;
  • RIKEN Plant Science Center, Yokohama, Kanagawa 230-0045, Japan


References

  1. Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation


Structured Information