Difference between revisions of "Os08g0189200"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os08g0189200| Description = Similar to Oxalate oxidase (Fragment)| Version = NM_001067692.1 GI:115475120 GeneID:4344839| Length = 1073 bp| Defi...")
 
(→‎Annotated Information)
 
(4 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
{{JaponicaGene|
+
The rice '''Os08g0189200''' was reported as ''' OsGLP8''' in 2009 <ref
−
GeneName = Os08g0189200|
 
−
Description = Similar to Oxalate oxidase (Fragment)|
 
−
Version = NM_001067692.1 GI:115475120 GeneID:4344839|
 
−
Length = 1073 bp|
 
−
Definition = Oryza sativa Japonica Group Os08g0189200, complete gene.|
 
−
Source = Oryza sativa Japonica Group
 
  
−
  ORGANISM  Oryza sativa Japonica Group
+
name="ref1" /> by researchers from the USA.
−
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
<br>
−
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
==Annotated Information==
−
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
===Gene Symbol===
−
|
+
*'''Os08g0189200 <=> OsGLP8'''
−
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
+
<br>
−
AP = Chromosome 8:5221233..5222305|
+
===Function===
−
CDS = 5221278..5221398,5221557..5222113|
+
*Challenge with two different fungal pathogens (causal agents of rice blast and sheath blight diseases) revealed that as more chr 8 OsGLP genes were suppressed, disease susceptibility of the plants increased. Of the 12 chr 8 OsGLPs, one clustered subfamily (OsGER4) contributed most to resistance.
−
GCID = <gbrowseImage1>
+
<BR>
−
name=NC_008401:5221233..5222305
+
===RNAi===
−
source=RiceChromosome08
+
*A highly conserved portion of the OsGLP coding region was used as an RNA interference trigger to silence a few to all expressed chr 8 OsGLP family members.
−
preset=GeneLocation
+
<br>
−
</gbrowseImage1>|
+
 
−
GSID = <gbrowseImage2>
+
==Labs working on this gene==
−
name=NC_008401:5221233..5222305
+
*Bioagricultural Sciences and Pest Management and Program in Plant Molecular Biology, Colorado State University, Fort Collins, Colorado 80523–1177 (P.M.M., R.M.D, J.E.L.);
−
source=RiceChromosome08
+
*Plant Pathology, Kansas State University, Manhattan, Kansas 66502–5502 (P.M.M.);
−
preset=GeneLocation
+
*Rice Research Institute and Plant Protection Institute,Guangdong Academy of Agricultural Sciences, Guangzhou 510640, People’s Republic of China (B.L., X.Z.);
−
</gbrowseImage2>|
+
*Plant Pathology, Washington State University, Pullman, Washington 99164 (S.H.H.);
−
CDNA = <cdnaseq>atggcctcctcttccttatttctgctagcttctcttcttgttctggcctcatggcagcaggccatcgcctttgatcctagcccgctccaagatttctgcgtcgccgacatggcctcacctgtgcgagtaaatgggtttccttgcaagaacccaatgaatgtcacatcggacgacttcttcaacgcggccaagtttgacatgccaaggaatactatgaataaagtcgggtctaatgtcaccaacctcaacgtcatcaatttcccgggcctcaacactcttggcatctcactagctcgcatcgactacgcgccaatgggtgtcaacccaccacatgtgcatcctcgtgctactgagcttctcactgtgcttgagggaacactttatgttggttttgttacatccaaccctaacaggctcttctccaaggtggtgcataagggtgatgtgttcgtgttccctaaggcaatgattcactttcaaatgaacctagaccacaataagcctgcggttgcccaatcagcactcagcagtcaaaacccaggagttattactattgctagtgccatatttggatcaacgccaccaatctctgatgatgttttagtcaaggcatttcaagtggagaagaaggtgattgattggctgaagtctcaattctcggagaataaccactactga</cdnaseq>|
+
*Plant Breeding,Genetics, and Biotechnology, International Rice Research Institute, Los Ban ˇos, 4031 Laguna, Philippines (H.L.).
−
AA = <aaseq>MASSSLFLLASLLVLASWQQAIAFDPSPLQDFCVADMASPVRVN                    GFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDY                    APMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQ                    MNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQVEKKVIDWLKSQ                    FSENNHY</aaseq>|
+
<br>
−
DNA = <dnaseqindica>46..166#325..881#caaaataacgataaacacagggagagagagagagaaagaaattcaatggcctcctcttccttatttctgctagcttctcttcttgttctggcctcatggcagcaggccatcgcctttgatcctagcccgctccaagatttctgcgtcgccgacatggcctcacctggtgtgcacacttaatttaactattatcctaatgttcggtagtattttatcactgcttattgaaaattgtatgttttgcatagtggcactacacaaaaatatggctcttgtggctactcaaaactttaacatgtttccttcttttttctatgcaaacagtgcgagtaaatgggtttccttgcaagaacccaatgaatgtcacatcggacgacttcttcaacgcggccaagtttgacatgccaaggaatactatgaataaagtcgggtctaatgtcaccaacctcaacgtcatcaatttcccgggcctcaacactcttggcatctcactagctcgcatcgactacgcgccaatgggtgtcaacccaccacatgtgcatcctcgtgctactgagcttctcactgtgcttgagggaacactttatgttggttttgttacatccaaccctaacaggctcttctccaaggtggtgcataagggtgatgtgttcgtgttccctaaggcaatgattcactttcaaatgaacctagaccacaataagcctgcggttgcccaatcagcactcagcagtcaaaacccaggagttattactattgctagtgccatatttggatcaacgccaccaatctctgatgatgttttagtcaaggcatttcaagtggagaagaaggtgattgattggctgaagtctcaattctcggagaataaccactactgattatatcatgtttcttgattgttcctttgtgcgttataatatgtataataaatgggcttttgcctagttgatgtcatggtatgctaaaacagtatgtttgatcgtccatgtttaataaatgtaatgcaatatggacacagtacggcgtccttttcctaattatatattaatataaaagaatgattgttcatg</dnaseqindica>|
+
==References==
−
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067692.1 RefSeq:Os08g0189200]|
+
<references>
−
}}
+
<ref name="ref1">
−
[[Category:Genes]]
+
Characterization of a histidine- and alanine-rich protein showing
−
[[Category:Japonica mRNA]]
+
 
−
[[Category:Oryza Sativa Japonica Group]]
+
interaction with calreticulin in rice
−
[[Category:Japonica Genes]]
+
</ref>
−
[[Category:Japonica Chromosome 8]]
+
 
−
[[Category:Chromosome 8]]
+
</references>
 +
<br>
 +
 
 +
==Structured Information==
 +
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]]

Latest revision as of 11:24, 13 November 2016

The rice Os08g0189200 was reported as OsGLP8 in 2009 [1] by researchers from the USA.

Annotated Information

Gene Symbol

  • Os08g0189200 <=> OsGLP8


Function

  • Challenge with two different fungal pathogens (causal agents of rice blast and sheath blight diseases) revealed that as more chr 8 OsGLP genes were suppressed, disease susceptibility of the plants increased. Of the 12 chr 8 OsGLPs, one clustered subfamily (OsGER4) contributed most to resistance.


RNAi

  • A highly conserved portion of the OsGLP coding region was used as an RNA interference trigger to silence a few to all expressed chr 8 OsGLP family members.


Labs working on this gene

  • Bioagricultural Sciences and Pest Management and Program in Plant Molecular Biology, Colorado State University, Fort Collins, Colorado 80523–1177 (P.M.M., R.M.D, J.E.L.);
  • Plant Pathology, Kansas State University, Manhattan, Kansas 66502–5502 (P.M.M.);
  • Rice Research Institute and Plant Protection Institute,Guangdong Academy of Agricultural Sciences, Guangzhou 510640, People’s Republic of China (B.L., X.Z.);
  • Plant Pathology, Washington State University, Pullman, Washington 99164 (S.H.H.);
  • Plant Breeding,Genetics, and Biotechnology, International Rice Research Institute, Los Ban ˇos, 4031 Laguna, Philippines (H.L.).


References

  1. ↑ Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice


Structured Information