Difference between revisions of "Os03g0162000"

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Please input one-sentence summary here.
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The rice '''Os03g0162000''' was reported as '''nal7''' in 2008 <ref name="ref1" /> by researchers from the Japan.  
 
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<br>
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''Os03g0162000 <=> nal7'''
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<br>
 
===Function===
 
===Function===
Please input function information here.
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*NAL7 locus encodes a Xavin-containing monooxygenase, which displays sequence homology with YUCCA.
 
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*NAL7 is involved in auxin biosynthesis.
===Expression===
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<br>
Please input expression information here.
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===Mutation===
 
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*This spontaneous mutation of nal7 occurred during the process of developing advanced backcrossed progeny derived from crosses of rice varieties with wild type leaf phenotype. While the mutation resulted in reduced leaf width, no signiWcant morphological changes at the cellular level in leaves were observed, except in bulliform cells.
===Evolution===
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<br>
Please input evolution information here.
 
 
 
You can also add sub-section(s) at will.
 
 
 
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*Agricultural Research Institute, HOKUREN Federation of Agricultural Cooperatives,
 
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*Department of Low-Temperature Sciences,National Agricultural Research Center for Hokkaido Region,
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*Department of Biological Sciences,Tokyo Metropolitan University, Hachioji,
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*Biochemical Laboratory,Groningen Biomolecular Sciences and Biotechnology Institute,
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<br>
 
==References==
 
==References==
Please input cited references here.
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<references>
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<ref name="ref1">
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NARROW LEAF 7 controls leaf shape mediated by auxin in rice
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</ref>
  
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</references>
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<br>
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
GeneName = Os03g0162000|
 
Description = Similar to Dimethylaniline monooxygenase-like protein (Flavin-containing monooxygenase YUCCA)|
 
Version = NM_001055583.1 GI:115450894 GeneID:4331709|
 
Length = 5408 bp|
 
Definition = Oryza sativa Japonica Group Os03g0162000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
 
AP = Chromosome 3:3333377..3338784|
 
CDS = 3335784..3336464,3336862..3337110,3337841..3337963,3338075..3338287|
 
GCID = <gbrowseImage1>
 
name=NC_008396:3333377..3338784
 
source=RiceChromosome03
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008396:3333377..3338784
 
source=RiceChromosome03
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atgcaggggcagcagaagcagaatgcaggtggtggtggtggtgacaatgcgagcccttgcattgtgctggatgggcccatcatcgtcggcgccgggccgtcggggctggccgtggcggcgacgctccggcagcacggagcgccgttcaccgtggtggagcggtccggtggcgtggccgacctgtggacgaaccgcacgtacgaccgcctccgcctccacctccccaaggtgttctgcgagctcccccacgtcgccttcccgccggacttccccacctaccccaccaagcacgacttcctccgctacctccactcctacgccgcccgcttcgccatcgccccgctcctccgccgcaccgtcacccgcgcctggtacgaccacccggcctccctgtggcgcgtgacgacgacgacaacgtcgtcgtcggcgacgtctgtgatcaccgagtacgcgtcgccgtggctggtggtggcgagcggggagaacgcggaggtggtggtgcccaaggtgaaggggagggagaggttcgccggcgaggcgctgcactcgagcgagtaccggagcggggagaggttcaggggcatgagggtgctggtcgtcggctgcggcaactctgggatggagatgtgcctggacctctgcgagcatggcgccatgccgttcatgtcggtcaggagtggtgtgcatgttctaccgagagagatgtttggggcctcgacatttggtatagcaatgaagctgttgagatggctgcccatcaagatggtggataggtttctactcctcgttgcaaggatggtgctgggagacaccgagaagtatggtctcaagaggcccaaactgggcccattggagatcaagaacatcaccggcaagagccctgttctcgacgtgggagcatggtccttgatcaaatcgggaaacatcaagatagtaccggaggtggagtcattcagcggcaacggggcgaggttcgtggacggcaacgagatggcgttcgatgccgtcatcttcgccaccggctacagaagcaatgtcccctcctggctccaggaggacggtgagttgttcacggaggagggcaagctgaggagcagcggcagcagcagtgagtggaggtggaggggtccaaacgggctctactgcgtgggattctccgggcggggcctgctcggcgctggagcagacgcgctgcgagctgccgccgacatcgccgggaggtggcaggagacgcagcaggcagcagccaacatctcctcggtgtag</cdnaseq>|
 
AA = <aaseq>MQGQQKQNAGGGGGDNASPCIVLDGPIIVGAGPSGLAVAATLRQ                    HGAPFTVVERSGGVADLWTNRTYDRLRLHLPKVFCELPHVAFPPDFPTYPTKHDFLRY                    LHSYAARFAIAPLLRRTVTRAWYDHPASLWRVTTTTTSSSATSVITEYASPWLVVASG                    ENAEVVVPKVKGRERFAGEALHSSEYRSGERFRGMRVLVVGCGNSGMEMCLDLCEHGA                    MPFMSVRSGVHVLPREMFGASTFGIAMKLLRWLPIKMVDRFLLLVARMVLGDTEKYGL                    KRPKLGPLEIKNITGKSPVLDVGAWSLIKSGNIKIVPEVESFSGNGARFVDGNEMAFD                    AVIFATGYRSNVPSWLQEDGELFTEEGKLRSSGSSSEWRWRGPNGLYCVGFSGRGLLG                    AGADALRAAADIAGRWQETQQAAANISSV</aaseq>|
 
DNA = <dnaseqindica>2408..3088#3486..3734#4465..4587#4699..4911#gtattttattcgcaacgtgcggttcttccagtttctcggcgcctcggcggtgcccgcgcagcgatcgaggggaaattcctgagagttaaattcgttgaatcttaccatcttgtttgttatgattggatccatttgcccttgcatgcttgattttgcaggtgtgggcgaaggggaagcctcgaagtgcaaagccgcccctgcttgcacgcgatgtgttcggtgaaatgcctctgggacgcacaggtgtcatttcccgaggaagctctgttctcgtaacattttgaggtagaggtcactgattctgattttttaacacgatgttttaagcaagaagttaacttttctcagcaactcgatctaacttttagggagatgcacattgccagtggtgctactacagattactgaaccataggcgctctatgctgtgaaaaggtaaatccagtaatgctgtccgctgttctccacaatttttctgaaattggtagcattatgtctgctttgtgggcattgatgtgccactgccgcctacagtcaaagttaaaatcgacgggatctccatgttcctgacacggcaaattcttcgattcgaatgaaatgtttgctttagcatcctaaagaaattcttttgttatatttatttttcttttaatcaataatcagttatgccaacacggtgcacaacctacaaacagggcagctaaaatttcaatcaaatggatcaggagcaccttctgacattgaatgcttgcacgtcatggaatgtggttaatgtgatcaactgatcatccatgtgctgatgggatctttaagtagctgctttgtgtccatcaccctatctgtcaacatcgtagagttcttcaccatatcaactttgaggtgtttcagattctttttatttggttgctgtcatagttagtggagacaatggggatatccaggcaaggaatctgaagagtatgtaacttctactcacgcgcatcaaaatttcagtatctcatcttttactgcctgcttatctggtgagatattataagagggaggactcagtaaactcctctaaaaaatggttcgaagtaaaccatttcaattattcagctcagtacgcaaaacaatgaggctggctttaggtatgtatccttcctccctgcttccactgtaacagttcattagtctaagtgaaattatttagcaattaggtcctaggtaactagctgagtagactaataaactaggctctaaaaatcttctggatcttattttgtagcagaaggggttgaccaggactgctctgtcaaagagcagaatgtccttaacatcagcactgcctgcttgcaaattatatgcttacatggtatgtctcttgctctcttcattagtcattacaaaacagtgttcgtagagatgcatacttagatccatgctattgttgcccaaatagaaaaaaaaaattatgattaacatcgtaacatgttctgtagaattaatgggtatggaagcattatcagtatataccattgatagactagctagctgattcgcccctccttccagaaaacagagaagtgattggttgaatgtactcatgaaagtcgcaaaccaaggaccactatggaggcttcaccttaagatatgcatatctaacactggaaactatgttcatgcattggctggcaatggcacatacatggttggttttgtcaaagtgcattgcatgacaagatctcatacgatttgatctctgggttctaggaatgcctaagatgcatgcaaagtttacttctagaaaaacccaaataaaaaaaagataatattagaagtatatacactatttccctttttttcttcattgtcctgaaaagattggtggcaatcattccaacagtagtgacagaactcataaaaatagccctgtacaatgtaaggtgtcccccttgtacattcagtcattcacttccccttatatataggggagagactagagagggaccctcaccctgagctcattgaggtggccaaataggttctgatcacacctttctcctcctccatgcttactacactggcactgtagtgcatgcaagaggagaggcaaaaagatgatgatgtccttagcagcttaggttgtggctacctagctcttcaactagcttcttcccagaatccacatagagaggcagagctatatagcagagtaggaagatacatacacacacatatgcatataattcctagctctagctggtgctagctccataggagatgtgtccattccattgcagtgccacgagctcgctagctagctgctagctcttcgtttccaagagtagtgtttgtttccaagaggccagagtgatcgatcgagcttagctcatcggttcttgggccatcgatcgatcgaccgatcatgcaggggcagcagaagcagaatgcaggtggtggtggtggtgacaatgcgagcccttgcattgtgctggatgggcccatcatcgtcggcgccgggccgtcggggctggccgtggcggcgacgctccggcagcacggagcgccgttcaccgtggtggagcggtccggtggcgtggccgacctgtggacgaaccgcacgtacgaccgcctccgcctccacctccccaaggtgttctgcgagctcccccacgtcgccttcccgccggacttccccacctaccccaccaagcacgacttcctccgctacctccactcctacgccgcccgcttcgccatcgccccgctcctccgccgcaccgtcacccgcgcctggtacgaccacccggcctccctgtggcgcgtgacgacgacgacaacgtcgtcgtcggcgacgtctgtgatcaccgagtacgcgtcgccgtggctggtggtggcgagcggggagaacgcggaggtggtggtgcccaaggtgaaggggagggagaggttcgccggcgaggcgctgcactcgagcgagtaccggagcggggagaggttcaggggcatgagggtgctggtcgtcggctgcggcaactctgggatggagatgtgcctggacctctgcgagcatggcgccatgccgttcatgtcggtcaggagtggtgtaagtactaacgactacttgctactctaccactcttcatgctcacttgcatcatatatatctctctcttctccaaactagctgatatatatattattgatcttataaatgatccaactaacagcgtgcattttccacttggcattttaaattgctccttttttcgataatggatatatcagttaatctagcttctacatccgagatgcatatatgatgtatccgcccgcttcgcatttttctcttttatgtaacaatgtaaatactttggtcaagtaaaacaagcatttttttccccagttctctagtacaaatattactttttttaaaaaaaaaagtatcaatattctattcattgacatattattcatatatgtttgctgcaacaatggaacaggtgcatgttctaccgagagagatgtttggggcctcgacatttggtatagcaatgaagctgttgagatggctgcccatcaagatggtggataggtttctactcctcgttgcaaggatggtgctgggagacaccgagaagtatggtctcaagaggcccaaactgggcccattggagatcaagaacatcaccggcaagagccctgttctcgacgtgggagcatggtccttgatcaaatcgggaaacatcaaggtatatgaatatgtggtcacctgtctctctctcttatctatctctctctccggaaagttggatggaagtaagcgtcaatggagttaaaaggcttctttcgcataccatgccaaatcctactttcacttttgaggtttccacaacattctccctagcttgtttgcgagtagtaactgggaaaaattacagttttatctgctccttggcctgatggttccttggattttaccctcttcctggaatcctgatgcaggagcaggacttgcatttgtactttagggagataccatatacgtagctttcatgtagttgacgatcgaagggaggcattattaagcatggaaacaaaatagacaccggagaaaaacaaagaggaagcattgtattataggatcatcttctttattttacataatgaaatgaaataatagctagacttatagctttgcactgaactctattgcaagtagtagcaacaagttgagtagtattaattgtgtccgtctcagaaagaaagaatgtacgataattctggctatgcatctggacaacgatcgttctttttgaaatgggtcgaggtagtagtagtactactgcagagtggtgtacattccgtttgacttgaggccggcccggccgggctatctctcacatatgtccgtataatgtgtatgttgtgcatgtgcacctctgatgcctcttgtgctgtaacaaacgcatatgcatgcagatagtaccggaggtggagtcattcagcggcaacggggcgaggttcgtggacggcaacgagatggcgttcgatgccgtcatcttcgccaccggctacagaagcaatgtcccctcctggctccaggtttacacatacatatatatatctctctgtatagctagactgtagaatgaatgcagttaaggcaatgttgctgatcgataccagtactgtgcttgtgatatgtatcatcaggaggacggtgagttgttcacggaggagggcaagctgaggagcagcggcagcagcagtgagtggaggtggaggggtccaaacgggctctactgcgtgggattctccgggcggggcctgctcggcgctggagcagacgcgctgcgagctgccgccgacatcgccgggaggtggcaggagacgcagcaggcagcagccaacatctcctcggtgtagtcgtccacaggccggatcgaggacggacgggacggacggtgcatgctgcgctgtgcacacaggctcagctacctcagctgctgctgctgctgctgctgatggcctctcgctcgcatgcatggcaacatggcataggtagccatggccggagtcgcatgcattgcaaatattccacagctcgcgagctcacatctgttgctagctagcgagcagcagcggccggctggtgaccagcgatggcgctggtgaccagcagcagcgagcagatgcacagagatcatatgtagtcgatgcatgggagaggaggaggaggaggaggaggggtgtgtgtgtacgtgtatgtgcagtgcaggtgggttgtgacaaagttttgcataggatgttgcttgtctgatgcgccccatgcaatgcagatacggctgaaagagtgcagtcgttttttttgtttttataattttggtccagggctgcaggccgtgatgatgtctgcattacgt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055583.1 RefSeq:Os03g0162000]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 3]]
 
[[Category:Chromosome 3]]
 

Latest revision as of 09:43, 15 November 2016

The rice Os03g0162000 was reported as nal7 in 2008 [1] by researchers from the Japan.

Annotated Information

Gene Symbol

  • Os03g0162000 <=> nal7


Function

  • NAL7 locus encodes a Xavin-containing monooxygenase, which displays sequence homology with YUCCA.
  • NAL7 is involved in auxin biosynthesis.


Mutation

  • This spontaneous mutation of nal7 occurred during the process of developing advanced backcrossed progeny derived from crosses of rice varieties with wild type leaf phenotype. While the mutation resulted in reduced leaf width, no signiWcant morphological changes at the cellular level in leaves were observed, except in bulliform cells.


Labs working on this gene

  • Agricultural Research Institute, HOKUREN Federation of Agricultural Cooperatives,
  • Department of Low-Temperature Sciences,National Agricultural Research Center for Hokkaido Region,
  • Department of Biological Sciences,Tokyo Metropolitan University, Hachioji,
  • Biochemical Laboratory,Groningen Biomolecular Sciences and Biotechnology Institute,


References

  1. NARROW LEAF 7 controls leaf shape mediated by auxin in rice


Structured Information