Difference between revisions of "Os08g0522400"

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(Created page with "{{JaponicaGene| GeneName = Os08g0522400| Description = Haem peroxidase family protein| Version = NM_001068815.1 GI:115477367 GeneID:4346078| Length = 3109 bp| Definition ...")
 
(Mutant)
 
(4 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''Os08g0522400''' was reported as ''' OsAPx-R''' in 2010 <ref name="ref1" /> by researchers from the France.
GeneName = Os08g0522400|
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<br>
Description = Haem peroxidase family protein|
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==Annotated Information==
Version = NM_001068815.1 GI:115477367 GeneID:4346078|
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===Gene Symbol===
Length = 3109 bp|
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*'''Os08g0522400 <=> OsAPx-R'''
Definition = Oryza sativa Japonica Group Os08g0522400, complete gene.|
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<br>
Source = Oryza sativa Japonica Group
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===Function===
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*'''APx-R''' is encoded by a single-copy gene in virtually all the species analyzed. '''APx-R''' proteins are targeted to the chloroplast and can physically interact with chloroplastic '''APx''' proteins.
 +
<br>
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===Mutant===
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*'''APx-R''' knockdown rice (Oryza sativa) plants presented delayed development and a disturbed steady state of the antioxidant system compared with wild type. Moreover, the accumulation of '''APx-R''' transcripts was modulated by drought, UV irradiation, cold, and aluminum exposure in rice, suggesting the involvement of '''APx-R''' in the environmental stress response.
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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==Labs working on this gene==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*Departamento de Gene ´tica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil;  
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil;  
            clade; Ehrhartoideae; Oryzeae; Oryza.
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*Universite ´ de Toulouse, UPS, UMR 5546, Laboratoire de Recherche en Sciences Ve ´ge ´tales, Castanet-Tolosan, France;
|
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*CNRS, UMR 5546, Castanet-Tolosan, France;  
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
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*Departamento de Bioquı ´mica e Biologia Molecular, Universidade Federal do Ceara ´, Fortaleza, Brasil;
AP = Chromosome 8:26059769..26062877|
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*Departamento de Biofı ´sica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil
CDS = 26060184..26060286,26060544..26060610,26060787..26060908,26061115..26061198,26061385..26061481<br>,26061577..26061619,26061737..26061807,26061998..26062052|
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<br>
GCID = <gbrowseImage1>
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==References==
name=NC_008401:26059769..26062877
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<references>
source=RiceChromosome08
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<ref name="ref1">
preset=GeneLocation
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Ascorbate peroxidase-related (APx-R) is a new hemecontaining protein functionally associated with ascorbate peroxidase but evolutionarily divergent
</gbrowseImage1>|
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</ref>
GSID = <gbrowseImage2>
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name=NC_008401:26059769..26062877
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</references>
source=RiceChromosome08
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<br>
preset=GeneLocation
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</gbrowseImage2>|
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==Structured Information==
CDNA = <cdnaseq>atgcttcgtttggctttccatgatgcagggacttttgatattgctgataaatcaggtggcatgaatggatctataatttatgaagttgatagacctgaaaatactgggctaaataaatccataaaggtattaggaaaagcgaaagaagtaattgaccttgtgcagcaagtatcatgggcggatttgattgccgtggctggtgctgagtcagttgcgctatgtggagggccagaaattccagtaagactaggtcgattagattccagtactgctgatcctgctggtaaacttcctgaagaaacattggatgccactgcgctgaaaacattattcagcaaaaagggcttttcgacacaggagatggttgtgttatctggagcacacacaattggaggtaaaggattcgggaatccaaatattttcgacaactcctattttaaagtactccttgagaagccacagccatcttcatctggcatgccggcaatggtaggactgcgaacggattgggcactcactgaagatgatgaatgcttaagatggatcaatttatatgcacaggaccaagctaaattttttgccgacttcaaggatgcatacatcaagcttgtaaatactggagcctcatggagatcagcttaa</cdnaseq>|
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]]
AA = <aaseq>MLRLAFHDAGTFDIADKSGGMNGSIIYEVDRPENTGLNKSIKVL                    GKAKEVIDLVQQVSWADLIAVAGAESVALCGGPEIPVRLGRLDSSTADPAGKLPEETL                    DATALKTLFSKKGFSTQEMVVLSGAHTIGGKGFGNPNIFDNSYFKVLLEKPQPSSSGM                    PAMVGLRTDWALTEDDECLRWINLYAQDQAKFFADFKDAYIKLVNTGASWRSA</aaseq>|
 
DNA = <dnaseqindica>2592..2694#2268..2334#1970..2091#1680..1763#1397..1493#1259..1301#1071..1141#826..880#actaatgtcccccatattgcagcctcctcccgcttcttctccagctgcagtcgttgcacctgcaggtaatgtttgcatcttctctcatgctttgataccaaccgtgccatcatttgttcatggaaggcacatgacctgtgaaaattgtgatgatacaggattagaagaagtgggaagacgaggataggagcttctgctgctggtcgtaggtgcagtagtgatgattctgcttgttcagaaccctctgagcagcaaaatgcagatttcttttcaggtatgagttgtttccattgcaagaactgagagaatgcttccagtgcctactgatatatttctgcccaactgaatttgctttgtgtatggtgaccacaggtcccatatcttctctttgttatacaaggagggactttgcttctgttgctctgctccctttcatacttcctcatgttcatatagcgagtgcgtaagtgcagtattcaaccataatcatattcctattctgctctaagtttccatagctatgagttgctaaccgtattaatttacatttctatgagtatttttatttatgtttaattggttcaattgtggaagcatggcctagaatcaaaagtcgaaatgaaccacaggtcaataaagtatacctacaatagctatttgtgtataagaataacctactcaaagtagtttcattctcgtaaaacggcagtatgacatcttttagagaagtttttttatgtttgactctatagggctgagccaattgatggttcaattattcaaaacggtgtgaggaatgttttatccaaggtcaaggctgctggcatgcttcgtttggctttccatgatgcagggacttttgatattgctgataaatcaggttcgatctttaatgtcttcattggttgaagttctatatacagttttagagcaaaaattgaatgtgtataaagtagaattatagagtattgcaaacaagaacaaactacgaataactacacttcaacctatctaaagatgaattctgagaagtaaaacagtagatggatatttatgacaatatcttgcaggtggcatgaatggatctataatttatgaagttgatagacctgaaaatactgggctaaataaatccataaaggtttttttcctccttttttttcttgctttttatcataaatagtagtaacatatccttactgaagaacaacatgttttgacttcccatatctgtttttaatgacttataactgaacaggtattaggaaaagcgaaagaagtaattgaccttgtgcagcaaggtacatggtttacaccctttttatatgttctttctgttttgagcttcggttgtgatgtatcttcaagcacacatataccgttactttgctaacagtatcatgggcggatttgattgccgtggctggtgctgagtcagttgcgctatgtggagggccagaaattccagtaagactaggtcgattagattccaggtgcaacatcacagtggtttgttcatttaacagttcccttgcaatgttggcaaaattttaggctgttcatttccaggcagtgcttctatttagtatgcatccatattttttaaagaacatgtaggtatccatattttctcaaagtaatacccatattcttatgaaataatgcatttgactctgtagtactgctgatcctgctggtaaacttcctgaagaaacattggatgccactgcgctgaaaacattattcagcaaaaagggcttttcgtgagtcctccttttctctacttacacaaacatcttgtgaattcaattcccattgcctatttatgaaaatttactaatgcgtggttaaaaattatgtatctgtacatgatacgtatctgcacatgatttcccctctaggcttctacaaaatgttcctcaaaacttagcatccttccatgtctgaagttaaacttgatacttggcaggacacaggagatggttgtgttatctggagcacacacaattggaggtaaaggattcgggaatccaaatattttcgacaactcctattttaaagtactccttgagaagccacagccatcttcatgtaagtccattcattttttccatcatgccctttaaatactgtcatcatgaatccataagccataactgaatctcaacttagctcatgcctttgtaaatcatccttgtacaatgtacaatcgacttggcattatttgtaaatcaccttaatacaatgtgttgtgttcttctatgaagctggcatgccggcaatggtaggactgcgaacggattgggcactcactgaagatgatgaatgcttaaggtattttttttcttgaactagatatgctaaataatgtcgcttacttgttacaagctctgaagaagtactagggataatcataagcttccaaactccatgcactaatcctactctatcttcaattctttcagtcaggacctaggctttaggttttaagtcacaaatttataggacaaatagatatatttgcaaggttccttcatgctcacatgtttggtcaggccattgacattgggcatatgccaaactacttgcagatggatcaatttatatgcacaggaccaagctaaattttttgccgacttcaaggatgcatacatcaagcttgtaaatactggagcctcatggagatcagcttaattttactcgcacacagctctctctcgtgtaggctattaggcacgattcaaacgtaggaacctcagagaatttttgtggaaaacaaagcaatggaggtctggatttcttaatatttactccaaagacaagctttcaccgtaaatttcttactgttacgaaatcatagtcattaaataggagtttcgaacatgaatccaacaaatatatttttgtatagcaaaacctatatattattttattaccaagggtcaaagcatagaactagacaatcaaaatcctccttatatttttgaatgtagggggctaataaatcatgcagttctgtaggatatattttcaacaaacatcaataaggaatgtaagaattggaactttcatgttaaaggcagcgttcttttctgaaacttcaaacgtc</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068815.1 RefSeq:Os08g0522400]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 8]]
 
[[Category:Chromosome 8]]
 

Latest revision as of 16:16, 18 November 2016

The rice Os08g0522400 was reported as OsAPx-R in 2010 [1] by researchers from the France.

Annotated Information

Gene Symbol

  • Os08g0522400 <=> OsAPx-R


Function

  • APx-R is encoded by a single-copy gene in virtually all the species analyzed. APx-R proteins are targeted to the chloroplast and can physically interact with chloroplastic APx proteins.


Mutant

  • APx-R knockdown rice (Oryza sativa) plants presented delayed development and a disturbed steady state of the antioxidant system compared with wild type. Moreover, the accumulation of APx-R transcripts was modulated by drought, UV irradiation, cold, and aluminum exposure in rice, suggesting the involvement of APx-R in the environmental stress response.


Labs working on this gene

  • Departamento de Gene ´tica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil;
  • Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil;
  • Universite ´ de Toulouse, UPS, UMR 5546, Laboratoire de Recherche en Sciences Ve ´ge ´tales, Castanet-Tolosan, France;
  • CNRS, UMR 5546, Castanet-Tolosan, France;
  • Departamento de Bioquı ´mica e Biologia Molecular, Universidade Federal do Ceara ´, Fortaleza, Brasil;
  • Departamento de Biofı ´sica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil


References

  1. Ascorbate peroxidase-related (APx-R) is a new hemecontaining protein functionally associated with ascorbate peroxidase but evolutionarily divergent


Structured Information