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| − | {{JaponicaGene|
| + | The rice '''Os03g0160100''' was reported as ''' OsEDR1''' in 2011 <ref name="ref1" /> by researchers from the China. |
| − | GeneName = Os03g0160100|
| + | <br> |
| − | Description = Similar to EDR1 (Fragment)|
| + | ==Annotated Information== |
| − | Version = NM_001055570.1 GI:115450868 GeneID:4331696|
| + | ===Gene Symbol=== |
| − | Length = 6932 bp|
| + | *'''Os03g0160100 <=> OsEDR1''' |
| − | Definition = Oryza sativa Japonica Group Os03g0160100, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *'''OsEDR1'''-suppressing/knockout (KO) plants, which developed spontaneous lesions on the leaves, have enhanced resistance to Xanthomonas oryzae pv. oryzae (Xoo) causing bacterial blight disease. |
| | + | <br> |
| | + | ===Mutant=== |
| | + | *Knockout of '''OsEDR1''' suppressed the ACC synthase (ACS) gene family, which encodes the rate-limiting enzymes of ethylene biosynthesis by catalysing the formation of ACC. The lesion phenotype and enhanced bacterial resistance of the '''OsEDR1-KO''' plants was partly complemented by the treatment with ACC. ACC treatmen was associated with decreased SA and JA biosynthesis in '''OsEDR1-KO''' plants. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | <br> |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ==References== |
| − | |
| + | <references> |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| + | <ref name="ref1"> |
| − | AP = Chromosome 3:3179681..3186612|
| + | OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesispce_221 |
| − | CDS = 3179841..3180284,3181096..3181518,3181984..3182084,3182727..3183988,3184174..3184214<br>,3184326..3184394,3184524..3184624,3184962..3185040,3185119..3185217<br>,3185306..3185374,3185467..3185516,3185760..3185936,3186045..3186183<br>|
| + | </ref> |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008396:3179681..3186612
| + | </references> |
| − | source=RiceChromosome03
| + | <br> |
| − | preset=GeneLocation
| + | ==Structured Information== |
| − | </gbrowseImage1>| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008396:3179681..3186612 | |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atgaagaatctgttcaagagtaagatcaagtggcagcaccggtcgaacgaccccgcgtcgtcgcaggggcaggggcaggggctgccgcagcagacgccgccgtcgccatcgccggcgagctccccgtcgggggggccgcctgcgctatccgtgtcgacggtatcgtcgtcgtccccttccgccgccgcgacgccgacgggggctgctgcggcgggggcgggaggtgggggtgggggaacgggtggggaggattacatgttgtcggaggaggagttccagatgcagctggcgatggcgctgtcggcgtccaacagcgagtgcgtgggcgacctggacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgaccgcttcgccgccgtccgggacgacgagcaaaccgcggatgcgctctcccgccgctaccgggactacaactttcttgattaccatgagaaagttattgatggcttctatgacatttttggcccctctatggaatcatcaaagcaagggaagatgccatcactagcagatcttcaaacgggcataggcgacctgggttttgaagtcatcgtaatcaatcgtgccattgataccaccttacaggagatggaacaagttgcacaatgtatcctgcttgactttcctgttgcaaatattgcagccttagttcaaagaatagccgagcttgttacagatcacatgggtggacctgtgaaagatgcaaatgacatgctcactagatggctagagaaaagcactgagctaagaacctcactacacacaagtttgttgcctattggctgcatcaagataggtctgtctcgtcaccgtgccctacttttcaagattctcgctgatagtgttggcattccttgcaagcttgtcaaagggagtaattatactggtgatgatgatgatgctatcaacataataaagatgaatgaaagggagtttttggttgatctcatggctgctcccggtactcttattccatcagatgtcttaagttggaagggcaactcattaaattctaatgcaagactcacccagaatccattggctgggtcatcaagtacaactgattctaatctcagtgccaatgcattaccacccggacataaaggtggccaactgcctttatttagcagtggcgattggatatcggccagtcaatctggatatgaaaaagatggagccaccacatcttcacaggcctcttcaagtggcacaacatctgttgctgctggaagcgcttttgatagttcttggacattagtttctcatggacaatcagatgatccatcaacctctgctggtatgtcagcacagcagaaagttatacttccaggtggagaacatccatggaatgagaatataaatgcgcgaaatgagaatataaaacttgtttcagatttacaagggaattcagagtccatcaacttatttgccgaccttaatccttttgggggtagggagcccaaaaggacttcagtgccattaaatgggccagataatagaaataatgagttgcaaagacgcagagagaatgtagtccctagcacacgaagaccccagcagcgattagttatgaaaaactggtctccttacaatgatgtttccaacaacaagcagtacaattatgttgaggattcatttgcacgtagaaatattggtgataatgctgcatcatcatctcaggtgccacggccatctgcaaaaaatactaatcttaatgttgtagtgcgcactgatacaccatacatggcagctcataattatgataatagtatggctggttcctctgcaatgaagatgacttctacagctgggattgggaaggttcctgataaggttctgtacggtgatttggacaagggccttactaattctagactgggggatcaaccaccgatagaaagacataaatggggcaattctgtagaaggaaggattccaacaggcacagttcacaatcaagcaaaagaacacaaggagaacttcgatggaaagcaagacaataagaagttacatcctgatccaaagaaatccccacttgacagattcatggacacatcaatgccatcaaggaaccctgaatccgtttcaccatcctttgctaggtcacacaagctagacaccatgttcgacgatgtgtctgaatgtgaaattcattgggaagatcttgtgattggtgaaaggattggcttaggttcatatggagaggtgtaccgtgctgattggaatggaacagaagtagctgtcaagaaattcttggatcaagatttctatggtgatgctttggatgaattccggagtgaagtgcggattatgcgtcgactgcgtcatccaaatattgttctcttcatgggtgctgttactcgtcctccaaacttatctattgtatctgagtatcttccaaggggaagcttatataagatccttcaccgtcctaattgccaaattgacgagaagcgtagaattaaaatggcccttgatgtggccaaaggaatgaattgcctccatattagtgtaccaacaattgttcatcgggatcttaaatcaccaaacttgctggttgacaacaactggaatgtgaaggtttgtgattttggactttcacgcttgaagcacagtacattcttatcatccaaatccactgctggaactccggagtggatggcacctgaggtcttgcggaatgaacaatcaaatgaaaagtgtgatgtttacagctttggtgtcatcttgtgggaattagcaacacttaggatgccatggagtggaatgaatccaatgcaagttgttggggcagtcggcttccaggacaagcggctcgatattcccaaggaaattgatcctctagttgcaaggatcatatgggaatgctggcagaaggatccaaatttgcggccctcgtttgcacagttaaccagtgctttgaagactgtccaaaggctagtaaccccttctcaccaggagtcccagagccctcctgtgcctcaagaaatatgggtgaattcttccaccccttga</cdnaseq>|
| |
| − | AA = <aaseq>MKNLFKSKIKWQHRSNDPASSQGQGQGLPQQTPPSPSPASSPSG GPPALSVSTVSSSSPSAAATPTGAAAAGAGGGGGGTGGEDYMLSEEEFQMQLAMALSA SNSECVGDLDGEQIRKAKLISLGRGDRFAAVRDDEQTADALSRRYRDYNFLDYHEKVI DGFYDIFGPSMESSKQGKMPSLADLQTGIGDLGFEVIVINRAIDTTLQEMEQVAQCIL LDFPVANIAALVQRIAELVTDHMGGPVKDANDMLTRWLEKSTELRTSLHTSLLPIGCI KIGLSRHRALLFKILADSVGIPCKLVKGSNYTGDDDDAINIIKMNEREFLVDLMAAPG TLIPSDVLSWKGNSLNSNARLTQNPLAGSSSTTDSNLSANALPPGHKGGQLPLFSSGD WISASQSGYEKDGATTSSQASSSGTTSVAAGSAFDSSWTLVSHGQSDDPSTSAGMSAQ QKVILPGGEHPWNENINARNENIKLVSDLQGNSESINLFADLNPFGGREPKRTSVPLN GPDNRNNELQRRRENVVPSTRRPQQRLVMKNWSPYNDVSNNKQYNYVEDSFARRNIGD NAASSSQVPRPSAKNTNLNVVVRTDTPYMAAHNYDNSMAGSSAMKMTSTAGIGKVPDK VLYGDLDKGLTNSRLGDQPPIERHKWGNSVEGRIPTGTVHNQAKEHKENFDGKQDNKK LHPDPKKSPLDRFMDTSMPSRNPESVSPSFARSHKLDTMFDDVSECEIHWEDLVIGER IGLGSYGEVYRADWNGTEVAVKKFLDQDFYGDALDEFRSEVRIMRRLRHPNIVLFMGA VTRPPNLSIVSEYLPRGSLYKILHRPNCQIDEKRRIKMALDVAKGMNCLHISVPTIVH RDLKSPNLLVDNNWNVKVCDFGLSRLKHSTFLSSKSTAGTPEWMAPEVLRNEQSNEKC DVYSFGVILWELATLRMPWSGMNPMQVVGAVGFQDKRLDIPKEIDPLVARIIWECWQK DPNLRPSFAQLTSALKTVQRLVTPSHQESQSPPVPQEIWVNSSTP</aaseq>|
| |
| − | DNA = <dnaseqindica>161..604#1416..1838#2304..2404#3047..4308#4494..4534#4646..4714#4844..4944#5282..5360#5439..5537#5626..5694#5787..5836#6080..6256#6365..6503#ccttcctcccacgcttcttcttcttcttcttcttccctttccccaacctcgccgtccttcgcttgctcacgcggccttctccgatcgcggcggcggcggcggaggaggaggagtacggggaggggcgtagcgaggatcgagcggagacgtggttgacgagatgaagaatctgttcaagagtaagatcaagtggcagcaccggtcgaacgaccccgcgtcgtcgcaggggcaggggcaggggctgccgcagcagacgccgccgtcgccatcgccggcgagctccccgtcgggggggccgcctgcgctatccgtgtcgacggtatcgtcgtcgtccccttccgccgccgcgacgccgacgggggctgctgcggcgggggcgggaggtgggggtgggggaacgggtggggaggattacatgttgtcggaggaggagttccagatgcagctggcgatggcgctgtcggcgtccaacagcgagtgcgtgggcgacctggacggggagcagatcaggaaggccaagctgataagcctcggcaggggcgaccgcttcgccgccgtccgggacgacgagcaaaccgcggatgcgctctcccgccgctaccgggtgagtcgccatgaccaaggattcgattcgagatggattatatatgctaaactatgcaaccgtgtgactagtgagattttagtttgcattgccatacaacagtagacttattgcgggggaaggattgttttacatgttatgattaccagttactactataatccatgctaccattgttctcgtcgaattcaaattcaaccaatggattggatagtagcttccgtggctatgtctagaccatgtaaatgtgaatcttcaccttggaatggaaaatcacacatagaatagggaagggctcctatctagcatctacatgtattcattcctgtggactggaattacctcctttggtctcttccaggttcccggtgatcaacccattaaaacaattgtattaataaaatacttctacaatatacgttgccatgtttttgctggtgcattgcgatagaatcctacagatcagagtcttgcattggatattgcccaggaataaaggactattgtttctgtggacggcggggaagtagatgatattacaaggcagcgagattttctagactggaggttcttttgcgggcaattgtagctttgtagcttgttggttacatcaatctatgtcttttacatgttgggttgattccattctgttacttagtgagtgatatttcatatttgtagatattttgcttggtagatcacttttttccttccatgatgtgtcaattaagctcaaacatggggatgataagtatatttgcttgctggattgtctgacattctatcactgtgcttctattctgactttcaggactacaactttcttgattaccatgagaaagttattgatggcttctatgacatttttggcccctctatggaatcatcaaagcaagggaagatgccatcactagcagatcttcaaacgggcataggcgacctgggttttgaagtcatcgtaatcaatcgtgccattgataccaccttacaggagatggaacaagttgcacaatgtatcctgcttgactttcctgttgcaaatattgcagccttagttcaaagaatagccgagcttgttacagatcacatgggtggacctgtgaaagatgcaaatgacatgctcactagatggctagagaaaagcactgagctaagaacctcactacacacaagtttgttgcctattggctgcatcaagataggtctgtctcgtcaccgtgccctacttttcaaggtcagttctctctcagaaaatcctcaatatattgaatgttatgaattgtctagggtaagggttcaaagactaggggatatggcactcgccttctaataacggtggcagggcttctccctgctgagctaaaagaggatttgaggcttagggctaactttagagattcattgattgattgataatagagtacgtgggggtccctttatagggaggacatactagacacataaggaactaaatctctagtattatataaaccaatccaatctctatctctaactttctaataaacttcatctctttcctaactagataatctcctatatttatatgatttattcctaatttatcatgcccaaactgctgcatgggcctatgctcatacattgaatgtaagcactagatttcttcatttgtccaacatatatagatgtccgcttatggctactgtatatcttcgtgcagattctcgctgatagtgttggcattccttgcaagcttgtcaaagggagtaattatactggtgatgatgatgatgctatcaacataataaagatgaatgaaaggtattgatgtatttgatcattgctgtttctctgggggaaaactatagtaaaaaaacccggaccggtgggtgacctggccgaccttctggttcaccggtctgaccggtggctcggatggttgaaccacggttcacatgtgtacatgtatattgttattccctcctactcacatatggtgcaatagcataagggttaggccatccttccgtgagcacactgcccagggttcgattcccaccaaatgcgccactccttgccaattttgcggaaaaaaaggggacagccacagcaagcattgatgaaatgggcctcaggcagcccatttatggcccatttgcaggttgacctgtccaaccagtatcggtttaatgtccggttcgcctaagaaccggccggttcagccggttcaaagcggtttgaatgcatgtccggtctttgaagcaaaccgaaccgtgctaaggtctggttcccatttttttccggtcgaaccgccggtccggtctggttttttctactatggggaaaacaatccaaatacattatttatttattcgtctgctacctttgtttcaaatatatttttaaataatttggtattgctgccttacattttctaagtgggtttatgtgctgtttttgcagggagtttttggttgatctcatggctgctcccggtactcttattccatcagatgtcttaagttggaagggcaactcattaaattctaatgcaagactcacccagaatccattggctgggtcatcaagtacaactgattctaatctcagtgccaatgcattaccacccggacataaaggtggccaactgcctttatttagcagtggcgattggatatcggccagtcaatctggatatgaaaaagatggagccaccacatcttcacaggcctcttcaagtggcacaacatctgttgctgctggaagcgcttttgatagttcttggacattagtttctcatggacaatcagatgatccatcaacctctgctggtatgtcagcacagcagaaagttatacttccaggtggagaacatccatggaatgagaatataaatgcgcgaaatgagaatataaaacttgtttcagatttacaagggaattcagagtccatcaacttatttgccgaccttaatccttttgggggtagggagcccaaaaggacttcagtgccattaaatgggccagataatagaaataatgagttgcaaagacgcagagagaatgtagtccctagcacacgaagaccccagcagcgattagttatgaaaaactggtctccttacaatgatgtttccaacaacaagcagtacaattatgttgaggattcatttgcacgtagaaatattggtgataatgctgcatcatcatctcaggtgccacggccatctgcaaaaaatactaatcttaatgttgtagtgcgcactgatacaccatacatggcagctcataattatgataatagtatggctggttcctctgcaatgaagatgacttctacagctgggattgggaaggttcctgataaggttctgtacggtgatttggacaagggccttactaattctagactgggggatcaaccaccgatagaaagacataaatggggcaattctgtagaaggaaggattccaacaggcacagttcacaatcaagcaaaagaacacaaggagaacttcgatggaaagcaagacaataagaagttacatcctgatccaaagaaatccccacttgacagattcatggacacatcaatgccatcaaggaaccctgaatccgtttcaccatcctttgctaggtcacacaagctagacaccatgttcgacgatgtgtctgaatgtgaaattcattgggaagatcttgtgattggtgaaaggattggcttaggtatttttcctcaactaagattttgacatgatccttgcttctctatacattaacaagttgaaccgacaaatctttaacaatttgtcaaactatattattatagctcagccatgtgtaaactcattgcactatctgatgccaatttgttgcacaaacttgaaccaacttcttcctcctcccaacaggttcatatggagaggtgtaccgtgctgattggaatggaacagtaagaaactgtttgcttttatttccatattgtgccatagaaacattcttcccagaggttaaattctttattgttttgcttctgtcaaaaaacatttttgtttatttgcaggaagtagctgtcaagaaattcttggatcaagatttctatggtgatgctttggatgaattccggagtgaagtaggtgaaactatatatattttatatatcttagagctttactggctatagcgtggattcatttatttgtcatttttaattgatttttgctgcaatgttttgatttgccatatactttctttttacaaggtgcggattatgcgtcgactgcgtcatccaaatattgttctcttcatgggtgctgttactcgtcctccaaacttatctattgtatctgagtatcttccaaggtataacaattttctactgttgtttgcttgtgaagatcttttggtgtttatgataaagtatcatggtgtagataaacatagaaaacattctatctggaaggaccacaaagaaaagctctctcaacaacttagctttagaatggaacataacactggaggttcaacatgctgtagttgaaatacctgtctttaatgatttacttgtgcatgggaggtggcatactggcatctatctatagtagttatattatagtgcaactcatgctctatagttattgtactggtcatgttcgacgaattgatggctcacccttgactactctcctgtccttggcaggggaagcttatataagatccttcaccgtcctaattgccaaattgacgagaagcgtagaattaaaatggcccttgatgtggtaagtattttctatattttcttggcatgtttgtttatttttgtatctgcttgagaaaatggttgctttctcttaaaggccaaaggaatgaattgcctccatattagtgtaccaacaattgttcatcgggatcttaaatcaccaaacttgctggttgacaacaactggaatgtgaaggtactgtgctctttttacctttacattcattcagtcataagtatttatgagcgtgctgatcgattggctcaccaatgatgtgaaataggtttgtgattttggactttcacgcttgaagcacagtacattcttatcatccaaatccactgctggaactgtaagtactaaaccggaccatagtaggatgagttctctccttctttgatcatcactaaacatttactatttctgttttcgatatctcaccagccggagtggatggcacctgaggtcttgcggaatgaacaatcaaatgaaaagtaagttattcctcgatggcttttgtttcaataactattagcttttgccctagcttgttcaatttattttttcattctgggcataccattcaaagttgttcagcattacagaagaaattatgtttatcttccagtctctactcgtagaaatggaacacccatctccctcacaaacctttcagctttccttgtttgattggtgtggcagtaatctcactcagacatcacctgaaatttctgcaggtgtgatgtttacagctttggtgtcatcttgtgggaattagcaacacttaggatgccatggagtggaatgaatccaatgcaagttgttggggcagtcggcttccaggacaagcggctcgatattcccaaggaaattgatcctctagttgcaaggatcatatgggaatgctggcagaagtgagtgtttagaaacaaacctattttatgttgcatcaataaagtactctcttccaactatcaattgtgttgctagatccgagctaatatttggtttttaaacctcagggatccaaatttgcggccctcgtttgcacagttaaccagtgctttgaagactgtccaaaggctagtaaccccttctcaccaggagtcccagagccctcctgtgcctcaagaaatatgggtgaattcttccaccccttgatgttgaggggcattccactctcaaaattgtgagtaattattgatgattgttgctgttaagtttgttcaagtctgcaaatgtgggcgcactgtagattctagcggccctaatggtagacatccctgctgccgcgacaaaagaacccagcagtagagtatgtatagagactatagtcatcgaccaaaacgatgacccgaagaagaaatccagtctgtggcatctcatttttcatgttcccagtttgcctttgtaaaaccttttggattcgagccctctggaaagcagtgagagctcgtggcgttggattaagaaggatctgtgtctgactgtgtttacaagtggattggataattgttgctgcagaacatgacatcttggaagttaaaaatgttgtaatatgcaatttttttaaacttgcaattcgaatgc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055570.1 RefSeq:Os03g0160100]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 3]] | |
| − | [[Category:Chromosome 3]]
| |
