|
|
| (5 intermediate revisions by 5 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''Os03g0119966''' was reported as ''' rim1''' in 2008 <ref name="ref1" /> by researchers from the Japan. |
| − | GeneName = Os03g0119966|
| + | <br> |
| − | Description = Similar to OsNAC8 protein|
| + | ==Annotated Information== |
| − | Version = NM_001186312.1 GI:297721754 GeneID:9270943|
| + | ===Gene Symbol=== |
| − | Length = 3958 bp|
| + | *'''Os03g0119966 <=> rim1''' |
| − | Definition = Oryza sativa Japonica Group Os03g0119966, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *'''RIM1''' functions as a host factor that is required for multiplication of RDV in rice. |
| | + | <br> |
| | + | ===Mutant=== |
| | + | *The '''rim1-1''' mutant remained susceptible to the two other viruses tested, one ofm which is also transmitted by leafhoppers, suggesting that the multiplication rather than transmission of RDV is specifically impaired in this mutant. |
| | + | <br> |
| | + | ==Labs working on this gene== |
| | + | *National Agricultural Research Center, Tsukuba, Ibaraki 305-8666, Japan, |
| | + | *National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan |
| | + | <br> |
| | + | ==References== |
| | + | <references> |
| | + | <ref name="ref1"> |
| | + | Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus |
| | + | </ref> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | </references> |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | <br> |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ==Structured Information== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 03]] |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| |
| − | AP = Chromosome 3:1067800..1071757|
| |
| − | CDS = 1067800..1067956,1069447..1069724,1069910..1070266,1070370..1070783,1070885..1070966<br>,1071093..1071757|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008396:1067800..1071757
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>| | |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008396:1067800..1071757
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggcgcccgtgagtttgcctccaggtttcaggttccaccccaccgatgaagaactaatcatctactaccttaagcggaagatcaacggaagacagatagaactcgaaatcattccagaggttgatctttacaagtgtgagccttgggatctgcctgaaaaatcctttcttccgagtaaagatctcgaatggtacttcttcagccctagagaccgcaagtacccaaatggatcaaggacgaaccgtgcaacaaaagccggatactggaaggcaactgggaaagatcgaaaagtgaactcacagaggcgtgcagttggtatgaagaagactcttgtgtactaccgtggtcgagctccacatggttctcgcaccgattgggtcatgcacgagtaccgcctcgatgagagggaatgcgagactgacactggcttacaggatgcatatgctttatgccgggtgttcaagaagacagcgcccgggccaaagatcatagagcattatggtgtggtgcaccaccatgtcgagcaacctcaatggatgacgagcagtatcgatcgctccccaacgttggacgtgtcgtgtgatggaagaggtgatgactttgagagcagcagcttctctttcccaacagagacgccaatggactccatgcacggtgggtttggaatgcagatgagtgcacctcacgaggatggcaaatggatgcagtttctgagtgaagatgccttcaacgccaccaatccattcttgacgaacccagtttctgccaacttctcatgccttccatccaaggtggatgttgcactggaatgtgcgaggctgcagcacaggctcaccttgcctcccttggaggtggaggatttcccacaggacgtcagccttgacacgaagattggcatacttcgcagtaaccccaacgaagttgacattctccaagaattcctgtcagttgcgactgcctctcaggagctaattaatggctccaccagtagctaccctgaaatgtggttaggagctagcacaagcagtgctagctacgtcaatgaactgtcctctctagttgagatgggcggcgttggcacttctaaccaccacgaatccgcaaggctacaggtcgagatcgctgacatggaggtgttcaaggacgagaagaagcgggtggagaaccttagaggagtcaagttggtgaacaatgaccttggggagattgttgtagaaggagatgaaagcaatccaacagaagacatcatcgcgcagtaccctataaaagtcactgcagataattcaggagaagccggtcatcgcatgaccgatcccactgacgtaggcggcatcgacactgccccgatcttctcgcaatctcaacctgacgactttgctgctggtttcgacgacgtcaaccctaatgcatctttcgatctgtacgagaaggttgacgtcaaccacaggctattcgtttcaagggtcgctgcggcgaagacattcttccaccgcattgagccatcgaagaaggtcagcttccactcgaacccggcagcaaccgccgtcagtaaggcgaccgagaagttccatttccccgttacgaccaaagttagtggtagggtttccatttttagcaagttcaaggcactcataagggacaagttcttgatgatgaggccatcacattcataccaaaggttgggcagcaaagaaaccacagtgaatgagctgctgcagattgtgtcactccttttagcaccgaagcaaatcaatggctgccctactgagcaagagctggtcaagaagaaggcgaaagaagtgatgaagccgggatggggtcgtgaagggagcaacaaattgtggcttccgctctccaaagggaagggcatttccagcatgtttttgagtgggaaatggacgtttctaacctccgcgttggccatcagcactccagctgagtgcgatcactaa</cdnaseq>|
| |
| − | AA = <aaseq>MAPVSLPPGFRFHPTDEELIIYYLKRKINGRQIELEIIPEVDLY KCEPWDLPEKSFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNSQR RAVGMKKTLVYYRGRAPHGSRTDWVMHEYRLDERECETDTGLQDAYALCRVFKKTAPG PKIIEHYGVVHHHVEQPQWMTSSIDRSPTLDVSCDGRGDDFESSSFSFPTETPMDSMH GGFGMQMSAPHEDGKWMQFLSEDAFNATNPFLTNPVSANFSCLPSKVDVALECARLQH RLTLPPLEVEDFPQDVSLDTKIGILRSNPNEVDILQEFLSVATASQELINGSTSSYPE MWLGASTSSASYVNELSSLVEMGGVGTSNHHESARLQVEIADMEVFKDEKKRVENLRG VKLVNNDLGEIVVEGDESNPTEDIIAQYPIKVTADNSGEAGHRMTDPTDVGGIDTAPI FSQSQPDDFAAGFDDVNPNASFDLYEKVDVNHRLFVSRVAAAKTFFHRIEPSKKVSFH SNPAATAVSKATEKFHFPVTTKVSGRVSIFSKFKALIRDKFLMMRPSHSYQRLGSKET TVNELLQIVSLLLAPKQINGCPTEQELVKKKAKEVMKPGWGREGSNKLWLPLSKGKGI SSMFLSGKWTFLTSALAISTPAECDH</aaseq>|
| |
| − | DNA = <dnaseqindica>1..157#1648..1925#2111..2467#2571..2984#3086..3167#3294..3958#atggcgcccgtgagtttgcctccaggtttcaggttccaccccaccgatgaagaactaatcatctactaccttaagcggaagatcaacggaagacagatagaactcgaaatcattccagaggttgatctttacaagtgtgagccttgggatctgcctggtatgttcttagtttgcttgttctaaagatatctattcctagtttttatgttgcttgttggtggtagaagttagaatgctgtagcccatgctaggatatatatatttcaatccaaccctaggcccatgcagctatcaccaattggcgttcttatatatcattctcttgctatataggagtaacagtttctttctttttgttttaagggtaggaatagcagtttcatgatatataatttgtatgagacttttgtataaatgctataaggacaagttttaagtttatatgcatgttaaaattcaggttaacaattaactataggcaagcatgcacctttattgttctccaaggaaagcacatatataggtccagtatgtttattggatgccgtgttatgtagacactaagcaatcttattcaattcttatactattatgccctcccaagaaacaccagtgcctacactacttgaggaaagaataaccacatgttcccttcttgatgagcacttcatctagctatttgtagttgaaatgtatgtaataataatcactaattaatcctggctataaatgtgtagctctatctgttgttttagtttttcttttatttcacataagtagcttttatgtcatttatgtcacaaaagaaaaggtttccatgattaattcgtaaattttggtacatttgaattgctagttatatcaaagcatatttgattttttttctctttatatataaaaaatcaagcattgtcaaaagcgatgtttcactgtcatagctttgtgtgaaaacaagattaatcatactgtgaaatttgctttactttcaaacatcttatgcacaccgaaaggagggatattgatagatcttgatccttttgtcaaaagaaatttaccttcaaaaagaaacgtcaaatttctgccaagtgtaaaggtgacattatatacgtccatgcactgagatacttgaaatggaaaataaatcctttatatcagtaacatcaaagttaaagtttatatattttggaccatgtcacaatcacagagagatttgaggaaaagatatattctctctttatccacttgctgtttgctttcaagcttgacagtttactacaaaaacaccatgtagcattcaacattctacgaagcgagtgctgtaaaaatatcgaataaaaagagaaaataaagatgagccttttttcttggggtgacaaaataaagcaagaaactaagaaaggaacttgtgatgaacatataggtcaagaagatgaacaaaagtccgcacagcctccaagagatataaagtgaccttggtctaattttctttcagctatggtgggctatcatgttaaatagccatatcttaactctgtcattagatccaatcatgatagtagacaagtacttcaatgtttatgctgcatgcatgattatgtatgactttttgtttgtatgacaccccctaactgatcgttcaatattcagaaaaatcctttcttccgagtaaagatctcgaatggtacttcttcagccctagagaccgcaagtacccaaatggatcaaggacgaaccgtgcaacaaaagccggatactggaaggcaactgggaaagatcgaaaagtgaactcacagaggcgtgcagttggtatgaagaagactcttgtgtactaccgtggtcgagctccacatggttctcgcaccgattgggtcatgcacgagtaccgcctcgatgagagggaatgcgagactgacactggcttacaggtgtgttactattaatcttgttgcatttttaaatctacaaccataatatatggataaaccatatatgttatatttagcccttcttttctgaaattataaacctagagtaaaatatgttactagctgcttgacatggacgcggcctctgatatgcaacctctttgcatttgtgtgtctatatgtaggatgcatatgctttatgccgggtgttcaagaagacagcgcccgggccaaagatcatagagcattatggtgtggtgcaccaccatgtcgagcaacctcaatggatgacgagcagtatcgatcgctccccaacgttggacgtgtcgtgtgatggaagaggtgatgactttgagagcagcagcttctctttcccaacagagacgccaatggactccatgcacggtgggtttggaatgcagatgagtgcacctcacgaggatggcaaatggatgcagtttctgagtgaagatgccttcaacgccaccaatccattcttgacgaacccagtttctgccaacttctcatgccttccatccaaggtacatatacatatatagtcaaaaatgaaggttacttactggtacagatgacatgtatattcaggcaatgagttcttaccggtgcaatgatattcatatgcaggtggatgttgcactggaatgtgcgaggctgcagcacaggctcaccttgcctcccttggaggtggaggatttcccacaggacgtcagccttgacacgaagattggcatacttcgcagtaaccccaacgaagttgacattctccaagaattcctgtcagttgcgactgcctctcaggagctaattaatggctccaccagtagctaccctgaaatgtggttaggagctagcacaagcagtgctagctacgtcaatgaactgtcctctctagttgagatgggcggcgttggcacttctaaccaccacgaatccgcaaggctacaggtcgagatcgctgacatggaggtgttcaaggacgagaagaagcgggtggagaaccttagaggagtcaagttggtgaacaatgaccttggggaggtaattgtttgcatcatacctatacaagtatattcccatcattatatatatactacatctcatgagactgattactttcatgcttcatttgtctcaagcagattgttgtagaaggagatgaaagcaatccaacagaagacatcatcgcgcagtaccctataaaagtcactgcagataattcaggtatgtaatatttaattttggctgttttacatgggctccacagaagtaattagcagtattccatattcgatacagactgtatacagatacagttcttgcatgcactaactcagagctagattgcaggagaagccggtcatcgcatgaccgatcccactgacgtaggcggcatcgacactgccccgatcttctcgcaatctcaacctgacgactttgctgctggtttcgacgacgtcaaccctaatgcatctttcgatctgtacgagaaggttgacgtcaaccacaggctattcgtttcaagggtcgctgcggcgaagacattcttccaccgcattgagccatcgaagaaggtcagcttccactcgaacccggcagcaaccgccgtcagtaaggcgaccgagaagttccatttccccgttacgaccaaagttagtggtagggtttccatttttagcaagttcaaggcactcataagggacaagttcttgatgatgaggccatcacattcataccaaaggttgggcagcaaagaaaccacagtgaatgagctgctgcagattgtgtcactccttttagcaccgaagcaaatcaatggctgccctactgagcaagagctggtcaagaagaaggcgaaagaagtgatgaagccgggatggggtcgtgaagggagcaacaaattgtggcttccgctctccaaagggaagggcatttccagcatgtttttgagtgggaaatggacgtttctaacctccgcgttggccatcagcactccagctgagtgcgatcactaa</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001186312.1 RefSeq:Os03g0119966]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
| |
| − | [[Category:Chromosome 3]]
| |
