Difference between revisions of "Os03g0107300"

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(Created page with "{{JaponicaGene| GeneName = Os03g0107300| Description = Citrate transporter family protein| Version = NM_001055226.1 GI:115450180 GeneID:4331328| Length = 2178 bp| Definit...")
 
(Annotated Information)
 
(6 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''Os03g0107300''' was reported as ''' lsi2''' in 2007 <ref name="ref1" /> by researchers from the Japan.
GeneName = Os03g0107300|
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<br>
Description = Citrate transporter family protein|
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==Annotated Information==
Version = NM_001055226.1 GI:115450180 GeneID:4331328|
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===Gene Symbol===
Length = 2178 bp|
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*'''Os03g0107300 <=> lsi2'''
Definition = Oryza sativa Japonica Group Os03g0107300, complete gene.|
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<br>
Source = Oryza sativa Japonica Group
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===Function===
 +
*This gene is constitutively expressed in the roots. The protein encoded by this gene is localized, like Lsi1, on the plasma membrane of cells in both the exodermis and the endodermis, but in contrast to Lsi1, which is localized on the distal side, '''Lsi2''' is localized on the proximal side of the same cells.
 +
<br>
 +
===Expression===
 +
*Expression of '''Lsi2''' in Xenopus oocytes did not result in influx transport activity for silicon, but preloading of the oocytes with silicon resulted in a release of silicon, indicating that '''Lsi2''' is a silicon efflux transporter.  
 +
<br>
  
  ORGANISM  Oryza sativa Japonica Group
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==Labs working on this gene==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*Research Institute for Bioresources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan.
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*Institute of Society for Techno-innovation of Agriculture, Forestry and Fisheries, Kamiyokoba, Tsukuba, Ibaraki, 305-0854, Japan.
            clade; Ehrhartoideae; Oryzeae; Oryza.
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*Biotechnology Research Center, The University of Tokyo, Bunkyo Ku, Tokyo, 113-8657, Japan.  
|
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*Solution Oriented Research for Science and Technology, Japan Science and Technology Agency, 3-4-15 Nihonbashi, Tokyo 103-0027, Japan.  
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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*QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan
AP = Chromosome 3:409044..411221|
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<br>
CDS = 409559..409827,409923..411072|
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==References==
GCID = <gbrowseImage1>
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<references>
name=NC_008396:409044..411221
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<ref name="ref1">
source=RiceChromosome03
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An efflux transporter of silicon in rice
preset=GeneLocation
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</ref>
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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</references>
name=NC_008396:409044..411221
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<br>
source=RiceChromosome03
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preset=GeneLocation
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==Structured Information==
</gbrowseImage2>|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
CDNA = <cdnaseq>atgagtgagcttgcgtcggcgcccaaggtggcgcttggatcgatcgcgttcgcggtgttctggatgatggcggtgttcccgtcggtgccgttcctgccgatcgggcggacggcggggtcgctgctgagcgcggtgctgatggtgatattccacgtgatcagccccgacgacgcgtacgcctccatcgacctcccaatcctgggcctcctcttcgccaccatggtggtgggcagctacctccggaacgccgggatgttcaagcacctggggcgtctgctggcgtggaagagccagggcgggcgcgacctcatgtgccgcgtctgcgtcgtcaccgccctcgccagcgccctcttcaccaacgacacctgctgcgtcgtcctcaccgagttcgtcctcgagctcgccgccgagcgcaacctccccgccaagcccttcctcctcgccctcgcctccagcgccaacatcggctccgccgccacccccatcggcaacccccagaacctggtcatcgccttcaatagcaagatcaccttccccaagttcctcatgggaatcctcccggccatgctcgtcgggatggccgtcaacatggtcatgctgctctgcatgtactggagggagctgggcggaggggccgagctcagcgtcgacggcaagcagatggaggcggtggaggaaggcaggtcgccggcgtcggccaagagcacgccgcagctgaacggcaacggcaacacgatgatgtcgctggagatgtcggagaacataacgaccaagcacccatggttcatgcagtgcacggaggcgcggcggaagctgttcctcaagagcttcgcgtacgtggtgacggtggggatggtggtggcctacatggtggggctcaacatgtcgtggacggccatcaccacggcgctggcgctggtggtggtcgacttccgcgacgccgagccgtgcctggacaccgtgtcctactcgctgctcgtcttcttctccgggatgttcatcaccgtcagcggcttcaacaagacgggcctcccgggagccatctgggacttcatggccccctactccaaggtcaacagcgtcggcggcatctccgtcctctccgtcatcatcctcctcctctccaacctcgcatcaaacgtaccaacggtgcttcttatgggtgatgaggtggcgaaggcggcggcgctgatatcgccggcggcggtgacgacgtcgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcgctgctggggtcggcggcgaacctgatagtgtgcgagcaggcgaggagggcgcccaggaacgcctacgacctcaccttctggcagcacatcgtcttcggcgtcccatccaccctcatcgtcaccgccgtcggcatacccctcatcggcaagatctga</cdnaseq>|
 
AA = <aaseq>MSELASAPKVALGSIAFAVFWMMAVFPSVPFLPIGRTAGSLLSA                    VLMVIFHVISPDDAYASIDLPILGLLFATMVVGSYLRNAGMFKHLGRLLAWKSQGGRD                    LMCRVCVVTALASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSAAT                    PIGNPQNLVIAFNSKITFPKFLMGILPAMLVGMAVNMVMLLCMYWRELGGGAELSVDG                    KQMEAVEEGRSPASAKSTPQLNGNGNTMMSLEMSENITTKHPWFMQCTEARRKLFLKS                    FAYVVTVGMVVAYMVGLNMSWTAITTALALVVVDFRDAEPCLDTVSYSLLVFFSGMFI                    TVSGFNKTGLPGAIWDFMAPYSKVNSVGGISVLSVIILLLSNLASNVPTVLLMGDEVA                    KAAALISPAAVTTSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQH                    IVFGVPSTLIVTAVGIPLIGKI</aaseq>|
 
DNA = <dnaseqindica>1395..1663#150..1299#tcagcagcgcatgcactagcagcttagctactgcgcgcgtaccagagagagatcatcagctcaagtagctaagctagctataatctgctagctagctcgatcagacacttaattacctgctaggtggtggtcgatcgaagaagaagaagatgagtgagcttgcgtcggcgcccaaggtggcgcttggatcgatcgcgttcgcggtgttctggatgatggcggtgttcccgtcggtgccgttcctgccgatcgggcggacggcggggtcgctgctgagcgcggtgctgatggtgatattccacgtgatcagccccgacgacgcgtacgcctccatcgacctcccaatcctgggcctcctcttcgccaccatggtggtgggcagctacctccggaacgccgggatgttcaagcacctggggcgtctgctggcgtggaagagccagggcgggcgcgacctcatgtgccgcgtctgcgtcgtcaccgccctcgccagcgccctcttcaccaacgacacctgctgcgtcgtcctcaccgagttcgtcctcgagctcgccgccgagcgcaacctccccgccaagcccttcctcctcgccctcgcctccagcgccaacatcggctccgccgccacccccatcggcaacccccagaacctggtcatcgccttcaatagcaagatcaccttccccaagttcctcatgggaatcctcccggccatgctcgtcgggatggccgtcaacatggtcatgctgctctgcatgtactggagggagctgggcggaggggccgagctcagcgtcgacggcaagcagatggaggcggtggaggaaggcaggtcgccggcgtcggccaagagcacgccgcagctgaacggcaacggcaacacgatgatgtcgctggagatgtcggagaacataacgaccaagcacccatggttcatgcagtgcacggaggcgcggcggaagctgttcctcaagagcttcgcgtacgtggtgacggtggggatggtggtggcctacatggtggggctcaacatgtcgtggacggccatcaccacggcgctggcgctggtggtggtcgacttccgcgacgccgagccgtgcctggacaccgtgtcctactcgctgctcgtcttcttctccgggatgttcatcaccgtcagcggcttcaacaagacgggcctcccgggagccatctgggacttcatggccccctactccaaggtcaacagcgtcggcggcatctccgtcctctccgtcatcatcctcctcctctccaacctcgcatcaaacgtaccaacgggtaattatacattctattaatccagaattaatgtatactactccatataagtataactaattaacatacaaaaatatatatgcgcatgcatgcagtgcttcttatgggtgatgaggtggcgaaggcggcggcgctgatatcgccggcggcggtgacgacgtcgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcgctgctggggtcggcggcgaacctgatagtgtgcgagcaggcgaggagggcgcccaggaacgcctacgacctcaccttctggcagcacatcgtcttcggcgtcccatccaccctcatcgtcaccgccgtcggcatacccctcatcggcaagatctgatctcatctcatcgacccatccaaattaattaattatgagatcgacaaacatccaagcttgctaggctcgtcgtcgtcgtcgtcgaccaccgtaccatatatatgcatgcatgccacgcacgtatatatatgctcctcaacctcaagtcaattaattaagagaatggatgaatgaatcaatgttgtgtatgatttcctttttgtttttgttttacccaccgtatatgtgctgtgtggtgtatggccggcgagcttgaaattgaattggccttgcttgcatgcatgcatggtgatcagatcagctcagctagctagctaaatcttgcttaattttatcaagtgtcaatcatgatgagaagagagggaactagatggagctagctagctagcaacacatgcagtgtgtgctaagcagtgcactctgcatgcttaaatttgcttgcttaattcaacatcgtattacatgtatgttgatatgtgcatgttcctcaaaatacatggaaaaaaaatgtttct</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055226.1 RefSeq:Os03g0107300]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 3]]
 
[[Category:Chromosome 3]]
 

Latest revision as of 06:19, 19 November 2016

The rice Os03g0107300 was reported as lsi2 in 2007 [1] by researchers from the Japan.

Annotated Information

Gene Symbol

  • Os03g0107300 <=> lsi2


Function

  • This gene is constitutively expressed in the roots. The protein encoded by this gene is localized, like Lsi1, on the plasma membrane of cells in both the exodermis and the endodermis, but in contrast to Lsi1, which is localized on the distal side, Lsi2 is localized on the proximal side of the same cells.


Expression

  • Expression of Lsi2 in Xenopus oocytes did not result in influx transport activity for silicon, but preloading of the oocytes with silicon resulted in a release of silicon, indicating that Lsi2 is a silicon efflux transporter.


Labs working on this gene

  • Research Institute for Bioresources, Okayama University, Chuo 2-20-1, Kurashiki 710-0046, Japan.
  • Institute of Society for Techno-innovation of Agriculture, Forestry and Fisheries, Kamiyokoba, Tsukuba, Ibaraki, 305-0854, Japan.
  • Biotechnology Research Center, The University of Tokyo, Bunkyo Ku, Tokyo, 113-8657, Japan.
  • Solution Oriented Research for Science and Technology, Japan Science and Technology Agency, 3-4-15 Nihonbashi, Tokyo 103-0027, Japan.
  • QTL Genomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan


References

  1. An efflux transporter of silicon in rice


Structured Information