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| − | {{JaponicaGene|
| + | The rice gene Os05g0454200 was reported as '''''bgl''''' in 2011<ref name="ref1" /> by researchers from Korea and China. |
| − | GeneName = Os05g0454200|
| |
| − | Description = Similar to Pollen-specific kinase partner protein|
| |
| − | Version = NM_001062253.1 GI:115464236 GeneID:4338974|
| |
| − | Length = 3710 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0454200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os05g0454200 <=> bgl, OsRopGEF10 |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| + | * Map-based cloning revealed that the bgl locus encodes OsRopGEF10, one of eleven OsRopGEFs in rice. RopGEFs (guanine nucleotide exchange factors for Rop) activate Rop/Rac GTPases, acting as molecular switches in eukaryotic signal transduction by replacing the bound GDP (inactive form) with GTP (active form) in response to external or internal cues. |
| − | AP = Chromosome 5:22339308..22343017|
| + | |
| − | CDS = 22339551..22339863,22339944..22340060,22340152..22340306,22340943..22341017,22341135..22341425<br>,22341898..22342248,22342346..22342750|
| + | * In yeast two-hybrid assays, OsRopGEF10 interacts with OsRac1, one of seven OsRac proteins; consistent with this, both proteins are localized in the plasma membrane. |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008398:22339308..22343017
| + | * OsRopGEF10 activates OsRac1 to turn on the molecular signaling pathway for SP development. |
| − | source=RiceChromosome05
| + | |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ===Expression === |
| − | GSID = <gbrowseImage2>
| + | * In agreement with the timing of SP initiation on the leaf epidermis, OsRopGEF10 is most strongly expressed in newly developing leaves before emergence from the leaf sheath. |
| − | name=NC_008398:22339308..22343017
| + | |
| − | source=RiceChromosome05
| + | ===Evolution=== |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | You can also add sub-section(s) at will. |
| − | CDNA = <cdnaseq>atggcgagaggaggaggaggaggagaggaggcggcggaggaggagagggaggtgagcgaggcgctgacggcggactcgtcggccgacgaggagtgccgccgcgggagcagcagctccagcgcaagctccggggacgcctccagcgagtcctactgcccgcccgacgagtggcagaaggtggccatcaagacctgcgtgtcgtccgacctcgtcgtcgtctcggccgagccggccaaggagaagaagccgccgccgccgccgtcgtcgccgcgcgtcgacgccgccccggcggacaagcaccaccggccctcagagatggagatgatgaaggagaggttcgcgaagctgctgctcggcgaggacatgtccggcggcggcaagggcgtctgcaccgcgctcgccatctccaacgccatcaccaacctctgcgcgacgatatttgggcagctgtggaggctggagccgctgctgccggagaaaaagacgatgtggcggcgcgagatggactggctgctctgcgtcagcgaccacatcgtcgagctagtccccacatggcagacattccccgacgggagtaagcttgagatcatgacaagcaggccacggtctgatctctacatcaatctgcccgcactccgaaagctagaccacatgctcctcgaaattctggagagcttcagggacccggaattctggtacgtcgaccaggggatttgcccgccggaccgcgacggcagcgcccccttcatgctaacgttccaccgccgcgacgagaagtggtggctgcccgtgccccgcgtccctcccggcggcgtcggcgagaccacgaggaggcagctcgagcacaagcgcgactgcgccagccagatcctcaaggccgccatggccatcaacagcaacgccctcgccgaaatggacgtccccgactcttacctcgactcgttacccaagaacgggcgtgcgacgctgggcgacatcatatacaggtacatcacgtcggaccagttctcgccggactgcctgctcgactgcctcgacctgtcgtcggagtaccaggcgctggagatcgccaaccgcgtcgaggcctccatctacgtgtggcgccggaggggcacgtcgggcgccgcgagccgcgccggaaacaagtcgtcatggggcatcgtcaaggacatgatcatggacacggagaagagagacgacctcctcgccgaccgcgccgagggcctcctcatgtgcctcaagcagaggttccccggactgacgcagaccagcctggacacgagcaagattcagtacaacaaggatgtggggaaatcgattctggagagctactcgagggttctggagagcctggcgtcgaacatcatcgcgcggatcgacgacctgctgtacgtcgacgagcggagcaggcaggcggagctgcttccaaccgcgggcgccgggagcggcaagatctcttgcatgccggccatgtcggcgtcgtcggtgccggcgtacccggtggtgtccacctcgggcaccccgccgccgtacgcgacggcgtacgccacgccgagcttctcgccggcgcagctgtcgagcccatccaacatcgggagggcactgctggtcgaccggcggtcgcacgacggccgagcgttcgacggcagcatggagttcatggggatggcggtcagcaacgccgtgttcgacctaccgggcctgtga</cdnaseq>|
| + | ==Labs working on this gene== |
| − | AA = <aaseq>MARGGGGGEEAAEEEREVSEALTADSSADEECRRGSSSSSASSG DASSESYCPPDEWQKVAIKTCVSSDLVVVSAEPAKEKKPPPPPSSPRVDAAPADKHHR PSEMEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLCATIFGQLWRLEPLLPEK KTMWRREMDWLLCVSDHIVELVPTWQTFPDGSKLEIMTSRPRSDLYINLPALRKLDHM LLEILESFRDPEFWYVDQGICPPDRDGSAPFMLTFHRRDEKWWLPVPRVPPGGVGETT RRQLEHKRDCASQILKAAMAINSNALAEMDVPDSYLDSLPKNGRATLGDIIYRYITSD QFSPDCLLDCLDLSSEYQALEIANRVEASIYVWRRRGTSGAASRAGNKSSWGIVKDMI MDTEKRDDLLADRAEGLLMCLKQRFPGLTQTSLDTSKIQYNKDVGKSILESYSRVLES LASNIIARIDDLLYVDERSRQAELLPTAGAGSGKISCMPAMSASSVPAYPVVSTSGTP PPYATAYATPSFSPAQLSSPSNIGRALLVDRRSHDGRAFDGSMEFMGMAVSNAVFDLP GL</aaseq>|
| + | * Department of Plant Science, Plant Genomics and Breeding Institute, Seoul National University, Seoul 151-921, Republic of Korea |
| − | DNA = <dnaseqindica>244..556#637..753#845..999#1636..1710#1828..2118#2591..2941#3039..3443#tgcatataccaccaccacctcccccgtcctcctctcctccaccgcaaccgcaaccacggccagccacgggccaagcgagtcacgactggcacaacgaggcaaaaacaccattgctacccccgaggcgtccctctcagctagccctggcacccgcaccacctagcggcggcgccgtcgtgttcgtgtcggccaagtcgtcaagaagctagctagtcattgccagtgggcgcattgtgctaggggatggcgagaggaggaggaggaggagaggaggcggcggaggaggagagggaggtgagcgaggcgctgacggcggactcgtcggccgacgaggagtgccgccgcgggagcagcagctccagcgcaagctccggggacgcctccagcgagtcctactgcccgcccgacgagtggcagaaggtggccatcaagacctgcgtgtcgtccgacctcgtcgtcgtctcggccgagccggccaaggagaagaagccgccgccgccgccgtcgtcgccgcgcgtcgacgccgccccggcggacaagcaccaccggccctcaggtacgtgcgccgccgccgcaaatccccagttcactcctcccttccaacacacgcggttaaattaattgaattggctgcagagatggagatgatgaaggagaggttcgcgaagctgctgctcggcgaggacatgtccggcggcggcaagggcgtctgcaccgcgctcgccatctccaacgccatcaccaacctctgcggtaagtgggaggtttcgaattgcacattgcgattaatgcggcggtttcatggacacggacatggaggctgagctgagttgcgttgctgcagcgacgatatttgggcagctgtggaggctggagccgctgctgccggagaaaaagacgatgtggcggcgcgagatggactggctgctctgcgtcagcgaccacatcgtcgagctagtccccacatggcagacattccccgacgggagtaagcttgaggtatactagtacttcacttcccctgacgaaatttactctgcacttctgcagtagttaagctaggagtgatacaggaattactaggatcatcagtgcgggccgttcgtgagcactgagtagcagatgcaagatttaatttggcgtcctacggatgaaccatgaagcgagtgcaaaattcgatttgaattttacatgaacatatggaccacaaaaagaaattatatatagtcattaaatacgtggttagccgtttggtacttagtaatcccgtttatattgaaacagttgggcgcgcgacgccgtatttctgaggcccaaaagagttaaggccacatcaatgtgctgtccgtttagttgtgtccgatttgtttgtcctcaaattatccggtccaaacgtgatccattactactctagatcaaatggagatccatcatttcccacttgctgcatctgtttacaccaatctttcttctgtagtgtccaactttattcgacaatgcaatgttcaggtctttttttggcaaggaaatgttcagtttcttttttttatgaactcttacacagacacattatataacttgtggtgagaacaatgataaactgactgttactctacatgtggattactacttcagatcatgacaagcaggccacggtctgatctctacatcaatctgcccgcactccgaaagctagaccacatgctcctcgtaagtctgacgaactctatctcggatcaacgatctgtccatccatccgaaaataaaagatgaactagtgctgtaataatgtgcatctcctgacgaaacgagcacatcttctgccaggaaattctggagagcttcagggacccggaattctggtacgtcgaccaggggatttgcccgccggaccgcgacggcagcgcccccttcatgctaacgttccaccgccgcgacgagaagtggtggctgcccgtgccccgcgtccctcccggcggcgtcggcgagaccacgaggaggcagctcgagcacaagcgcgactgcgccagccagatcctcaaggccgccatggccatcaacagcaacgccctcgccgaaatggacgtccccgactcttacctcgactcgttacccaaggtccaaatcaattctactacctgtagagaataggagacggattctaatcaaccgcaactaaatggttatgaattttttttaaaaaaataacaagatagattaatatgtaatatattactccacaaacatacaatttcgaatttaacttttacaagttataaaaaataacaaatttaattgcaaatatacgtatactaatttaagttttatttgttgtttttgttacaatttttagaagttgaaatttaacttacatgtttgtggagtgatatattacatattgttctatctttttaattatttttaaaaaagttttataattatttagatgacatgcattcacttgggtgattaaaagagttttccgtagagaatactgtaaaaattatcagaaaaaagaaaactacactaatgctcatcatacatgaacgtttgctgtttcttgattctgacattgatgtttgattgtcagaacgggcgtgcgacgctgggcgacatcatatacaggtacatcacgtcggaccagttctcgccggactgcctgctcgactgcctcgacctgtcgtcggagtaccaggcgctggagatcgccaaccgcgtcgaggcctccatctacgtgtggcgccggaggggcacgtcgggcgccgcgagccgcgccggaaacaagtcgtcatggggcatcgtcaaggacatgatcatggacacggagaagagagacgacctcctcgccgaccgcgccgagggcctcctcatgtgcctcaagcagaggttccccggactgacgcagaccagcctggacacgagcaagattcagtacaacaaggttggtgaatccatcatttgcagtttgcaaatctcgctatccgtgttgatggtgatcgggtttggatgaactgatcgtgagatgactctctcttcaggatgtggggaaatcgattctggagagctactcgagggttctggagagcctggcgtcgaacatcatcgcgcggatcgacgacctgctgtacgtcgacgagcggagcaggcaggcggagctgcttccaaccgcgggcgccgggagcggcaagatctcttgcatgccggccatgtcggcgtcgtcggtgccggcgtacccggtggtgtccacctcgggcaccccgccgccgtacgcgacggcgtacgccacgccgagcttctcgccggcgcagctgtcgagcccatccaacatcgggagggcactgctggtcgaccggcggtcgcacgacggccgagcgttcgacggcagcatggagttcatggggatggcggtcagcaacgccgtgttcgacctaccgggcctgtgaatcgatcgatcacgggccccgtgtctagtgctttacttaccctcgcctgtgtgcagtagttgtaatgttgtatggcgtgatttcttctcgggagggcggcctgtttttgccgtttcgccgtttcgccgccctccagttttatgatgtgttttgacagtgcctttgttaacttgctagtgttgtaagagtgcttaagttcgatgttggtcggatggcaaaagagaaccatcgcgtttgtgcaaaccacagagttttcttggctgtttt</dnaseqindica>|
| + | * Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062253.1 RefSeq:Os05g0454200]|
| + | * Key Laboratory of Crop Genomics and Genetic Improvement of Ministry of Agriculture, China Agriculture University, Beijing 100094, China |
| − | }}
| + | * Beijing Key Laboratory of Crop Genetic Improvement, China |
| − | [[Category:Genes]] | + | * Agriculture University, Beijing 100094, China |
| − | [[Category:Japonica mRNA]]
| + | * Department of Agronomy, Zhejiang University, Hangzhou 310029, China |
| − | [[Category:Oryza Sativa Japonica Group]] | + | |
| − | [[Category:Japonica Genes]]
| + | ==References== |
| − | [[Category:Japonica Chromosome 5]] | + | <references> |
| − | [[Category:Chromosome 5]]
| + | * <ref name="ref1"> |
| | + | Yoo JH, Park JH, Cho SH, Yoo SC, Li J, Zhang H, Kim KS, Koh HJ, Paek NC. The |
| | + | rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the |
| | + | development of small cuticular papillae on leaf surfaces. Plant Mol Biol. 2011 |
| | + | Dec;77(6):631-41. doi: 10.1007/s11103-011-9839-0. PubMed PMID: 22038138. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
