Difference between revisions of "Os05g0472700"

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(Created page with "{{JaponicaGene| GeneName = Os05g0472700| Description = Similar to Metal transport protein| Version = NM_001062353.1 GI:115464436 GeneID:4339082| Length = 2493 bp| Definit...")
 
 
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{{JaponicaGene|
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The rice gene Os05g0472700 was reported as '''''oszip5''''' in 2010<ref name="ref1" /> by researchers from Korea and USA.
GeneName = Os05g0472700|
 
Description = Similar to Metal transport protein|
 
Version = NM_001062353.1 GI:115464436 GeneID:4339082|
 
Length = 2493 bp|
 
Definition = Oryza sativa Japonica Group Os05g0472700, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os05g0472700 <=> oszip5, OsZIP8, ZIP8, OsZIP9
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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* '''''OsZIP5''''' is inducible under Zn deficiency. '''''OsZIP5''''' encodes a Zn transporter.
AP = Chromosome 5:23262252..23264744|
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* '''''OsZIP5''''' plays a role in Zn distribution within rice.
CDS = 23262385..23262990,23263138..23263287,23264203..23264508|
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===Mutation===
GCID = <gbrowseImage1>
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* Knockout plants showed no visible phenotypic changes under either normal or deficient conditions. However, they were tolerant to excess Zn and contained less Zn.
name=NC_008398:23262252..23264744
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===Overexpression===
source=RiceChromosome05
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* Transgenic plants overexpressing the gene grew less well. Overexpression of the gene decreased the Zn concentration in shoots, but caused it to rise in the roots. overexpressing transgenics were sensitive to excess Zn.
preset=GeneLocation
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</gbrowseImage1>|
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===sublocalization===
GSID = <gbrowseImage2>
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* The OsZIP5-GFP fusion protein was localized to the plasma membrane.
name=NC_008398:23262252..23264744
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===Evolution===
source=RiceChromosome05
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preset=GeneLocation
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You can also add sub-section(s) at will.
</gbrowseImage2>|
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==Labs working on this gene==
CDNA = <cdnaseq>atggcgacggcggcgatgaccaaggtgttcgtcctgctctttctggtggcggcgtgctacctgccggcgcacgcggcggcagcggagtgcgactgcgcgacggacacggcggggcgggacaaggcgcaggcgctgcggctcaaggtcatcgccatcttctgcatcctcgccgggagcaccgtcggggcggcgctgccgtccctgggcggcaggttcccggcgatccagccggagacggacgtgttcctctccgtcaaggccttcgccggcggcgtcatcctcgccacgggcctggtgcacatcctccccgcggccttcgaggcgctcagctcgccgtgcctcgtcggcggcccgtggaagcgcttcccgttcgccggcatggtcgccatggtctccgccatcggcacgctcatcgtcgacaccgtcgccacggggtacttccaccgcacggacgccaagaggaaggccgcggccgtcgccgacgagccagccgacgacctggaggcctccgacgagcacagccacggccacgcccacggcatgtccgtcatgtccgtcgctcccgccggcgaggaagacctcgtccgccaccgcgtcatctctcaggtgctggagctgggagtggtggtgcactcgctcatcatcgggatgtcgctgggcgcctccgacttcccgagcacggtgcggccgctcgtgccggcgctgacgtttcatcagttcttcgagggcatcgggctcggcggatgcatcgttcaggcaaagttccgtgtcaggtcagtggtgacgatggcgctcttcttctccctgacgacgccggccggcatcgtcgtcgggatcgggatctcctccgtctacgacgcgaacagcccaacggcgctggtggtgcaggggctcctcgaggcggcggcagcggggatactcgtctacatggcgctcgtcgacatcctcgccgaggacttcatgaagaccaaggtgcagagaaggggacgcctgcagctcgccatgaacgtcgcgttgctgctcggcgcagggctcatgtccatgatcgccatctgggcgtga</cdnaseq>|
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* Department of Plant Molecular Systems Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Republic of Korea
AA = <aaseq>MATAAMTKVFVLLFLVAACYLPAHAAAAECDCATDTAGRDKAQA                    LRLKVIAIFCILAGSTVGAALPSLGGRFPAIQPETDVFLSVKAFAGGVILATGLVHIL                    PAAFEALSSPCLVGGPWKRFPFAGMVAMVSAIGTLIVDTVATGYFHRTDAKRKAAAVA                    DEPADDLEASDEHSHGHAHGMSVMSVAPAGEEDLVRHRVISQVLELGVVVHSLIIGMS                    LGASDFPSTVRPLVPALTFHQFFEGIGLGGCIVQAKFRVRSVVTMALFFSLTTPAGIV                    VGIGISSVYDANSPTALVVQGLLEAAAAGILVYMALVDILAEDFMKTKVQRRGRLQLA                    MNVALLLGAGLMSMIAIWA</aaseq>|
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* Integrative Biosciences and Biotechnology, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Republic of Korea
DNA = <dnaseqindica>134..739#887..1036#1952..2257#gtccacgggttcaaaaggcctagaagaacgaagcggagcttagctcgcgcatgtgccaacctgaacctccgctgcgaaacgccgcgacatctcgccgcgcgagctaagcttagctgcaggtgagccatcggcgatggcgacggcggcgatgaccaaggtgttcgtcctgctctttctggtggcggcgtgctacctgccggcgcacgcggcggcagcggagtgcgactgcgcgacggacacggcggggcgggacaaggcgcaggcgctgcggctcaaggtcatcgccatcttctgcatcctcgccgggagcaccgtcggggcggcgctgccgtccctgggcggcaggttcccggcgatccagccggagacggacgtgttcctctccgtcaaggccttcgccggcggcgtcatcctcgccacgggcctggtgcacatcctccccgcggccttcgaggcgctcagctcgccgtgcctcgtcggcggcccgtggaagcgcttcccgttcgccggcatggtcgccatggtctccgccatcggcacgctcatcgtcgacaccgtcgccacggggtacttccaccgcacggacgccaagaggaaggccgcggccgtcgccgacgagccagccgacgacctggaggcctccgacgagcacagccacggccacgcccacggcatgtccgtcatgtccgtcgctcccgccggcgaggaagacctcgtccgccaccgcgtcatctctcaggtatgtcatactacatctcccgccaccgcgccattcaagaaacagagctgcgaaaacaaaaaaacgcaaccaaattaagaaaattcaatcaaaatttctgttcttattttcttaatcgattttgcttgtgcgtccttgatggtggaggtgctggagctgggagtggtggtgcactcgctcatcatcgggatgtcgctgggcgcctccgacttcccgagcacggtgcggccgctcgtgccggcgctgacgtttcatcagttcttcgagggcatcgggctcggcggatgcatcgttcaggtgatttacccacacatttactccgcactcacaattgtcaatttcaacctgttttttttttttttcgagagagagagagagagagaaagatttcaacgtttttggtgttcatatcctatcaatccatcgtgcttactaactcgtccgaagataccgatttcaaacaagaggacaactgatgtcttgtactaccaaaaagttagaaaaagacgttccgattttgcagatttacagatgggccttagtactttgaggggcccagttgttaaatcacgactcaaatcgcatcccatcctacttccctgggcggctgggcctccactaattaatctcaatcaaaagtaatccttctattttatattattattaatcgttttaactttctttttaaaatttgactaagtttatagaaaaatataacaacattttaacccaaaacaaatatattatcaaaatatattttatgttaattttaatgaaattaatttcgtattgtagatgttaataatttttcggaattgctagaaaacttccgcaagtttttttttgcccccaaaaaactttcagatttgtggccatcagatcgcattgagatttgtgcatgaaggaaaataattggtagaaagaaattttcacccatctcacgcgtaagaacttgatgctaaccaaaacatagtagaatataagttttatataagttatattacagttacagcgcagttgcagtgtggttacgatgtaatttcacttcaattatattatagttatatctgaaaatttttcactcaaaaaacttactgcggttttcttaatactccttaatctttctataaatttaggtaaacttaaataagtttgattaagaaaaaagttaaaataacttataatataacctgttctttcttgtttctgcaggcaaagttccgtgtcaggtcagtggtgacgatggcgctcttcttctccctgacgacgccggccggcatcgtcgtcgggatcgggatctcctccgtctacgacgcgaacagcccaacggcgctggtggtgcaggggctcctcgaggcggcggcagcggggatactcgtctacatggcgctcgtcgacatcctcgccgaggacttcatgaagaccaaggtgcagagaaggggacgcctgcagctcgccatgaacgtcgcgttgctgctcggcgcagggctcatgtccatgatcgccatctgggcgtgatgagtgagtgaccatcacggccagcatgcgacgtgcggcgtttcaatttgttcggcaggaatggcaggtttttgttcttaggcgcgtctgatcacgctcgcgctctcgcgaagacctgagaattcgttcgaggatctcaaaagagagaccactccgttggttgaaactgacgaggagaggggtctcccgtgcacgatatgtagaacagttcagtgaccatgttactctgacttgac</dnaseqindica>|
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* Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062353.1 RefSeq:Os05g0472700]|
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==References==
}}
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<references>
[[Category:Genes]]
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* <ref name="ref1">
[[Category:Japonica mRNA]]
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Lee S, Jeong HJ, Kim SA, Lee J, Guerinot ML, An G. OsZIP5 is a plasma membrane
[[Category:Oryza Sativa Japonica Group]]
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zinc transporter in rice. Plant Mol Biol. 2010 Jul;73(4-5):507-17. doi:
[[Category:Japonica Genes]]
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10.1007/s11103-010-9637-0. PubMed PMID: 20419467.
[[Category:Japonica Chromosome 5]]
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</ref>
[[Category:Chromosome 5]]
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</references>
 +
 
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Latest revision as of 07:32, 19 November 2016

The rice gene Os05g0472700 was reported as oszip5 in 2010[1] by researchers from Korea and USA.

Annotated Information

Gene Symbol

  • Os05g0472700 <=> oszip5, OsZIP8, ZIP8, OsZIP9

Function

  • OsZIP5 is inducible under Zn deficiency. OsZIP5 encodes a Zn transporter.
  • OsZIP5 plays a role in Zn distribution within rice.

Mutation

  • Knockout plants showed no visible phenotypic changes under either normal or deficient conditions. However, they were tolerant to excess Zn and contained less Zn.

Overexpression

  • Transgenic plants overexpressing the gene grew less well. Overexpression of the gene decreased the Zn concentration in shoots, but caused it to rise in the roots. overexpressing transgenics were sensitive to excess Zn.

sublocalization

  • The OsZIP5-GFP fusion protein was localized to the plasma membrane.

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Plant Molecular Systems Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Republic of Korea
  • Integrative Biosciences and Biotechnology, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Republic of Korea
  • Department of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA

References

  1. Lee S, Jeong HJ, Kim SA, Lee J, Guerinot ML, An G. OsZIP5 is a plasma membrane zinc transporter in rice. Plant Mol Biol. 2010 Jul;73(4-5):507-17. doi: 10.1007/s11103-010-9637-0. PubMed PMID: 20419467.


Structured Information