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| − | Please input one-sentence summary here.
| + | The rice gene Os05g0530500 was reported as '''''snrk1a''''' in 2007<ref name="ref1" /> by researchers from China. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os05g0530500 <=> SnRK1A/OSK1, SnRK1A, snrk1a, osk1 |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * SnRK1A is an important intermediate in the sugar signaling cascade, functioning upstream from the interaction between MYBS1 and aAmy3 SRC and playing a key role in regulating seed germination and seedling growth in rice. |
| | + | * SnRK1A is an upstream regulator of MYBS1 and aAmy3 in the sugar signaling pathway. |
| | + | * SnRK1A is also necessary for the activation of MYBS1 and aAmy3 expression under glucose starvation. |
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| − | ===Expression=== | + | |
| − | Please input expression information here.
| + | ===Expression === |
| | + | * '''''SnRK1A''''' expression in rice is regulated by sugars at the posttranscriptional level. |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Department of Life Sciences, National Central University, Jhongli City, Taoyuan County 320, Taiwan, Republic of China |
| | + | * Institute of Molecular Biology, Academia Sinica, Nankang, Taipei 115, Taiwan, Republic of China |
| | + | * Department of Agronomy, National Cha-Yi University, Cha-Yi City 600, Taiwan, Republic of China |
| | + | * Institute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei 115, Taiwan, Republic of China |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Lu CA, Lin CC, Lee KW, Chen JL, Huang LF, Ho SL, Liu HJ, Hsing YI, Yu SM. The |
| | + | SnRK1A protein kinase plays a key role in sugar signaling during germination and |
| | + | seedling growth of rice. Plant Cell. 2007 Aug;19(8):2484-99. PubMed PMID: |
| | + | 17766403; PubMed Central PMCID: PMC2002608. |
| | + | </ref> |
| | + | </references> |
| | | | |
| − | ==References==
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| − | Please input cited references here.
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| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | GeneName = Os05g0530500|
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| − | Description = OSK1|
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| − | Version = NM_001062663.1 GI:115465056 GeneID:4339410|
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| − | Length = 4468 bp|
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| − | Definition = Oryza sativa Japonica Group Os05g0530500, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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| − | AP = Chromosome 5:26408336..26412803|
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| − | CDS = 26408759..26408872,26409159..26409386,26409474..26409614,26409741..26409824,26409900..26409989<br>,26410082..26410267,26410361..26410492,26410593..26410775,26411001..26411185<br>,26411949..26411969,26411976..26412123|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008398:26408336..26412803
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| − | source=RiceChromosome05
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008398:26408336..26412803
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| − | source=RiceChromosome05
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggagggagctggcagagatgggaaccctcttggcggttaccggattggcaaaaccctagggattgggtcatttggcaaagtgaagatcgcggagcatatattgactggtcacaaggtggcaatcaagatcctcaatcgccgtaagagcatggagatggaagagaaagttaaaagagaaatcaagatacttagattatttatgcacccacatatcattcgcctttatgaggtgatagacaccccagctgatatttatgttgttatggagtatgtcaaatctggagagttgtttgattacatcgttgagaagggaagactgcaagaggaagaagctcgacgctttttccagcagatcatatctggtgttgaatattgccatagaaacatggtggttcatcgtgatcttaagccagagaaccttcttttggactccaaatgcaatgttaagattgcagactttggcttgagtaatgttatgcgtgatggtcactttctgaagacaagttgtggtagcccaaattatgcagcacctgaggtgatatctggtaaactatatgctggccctgaagttgatgtgtggagttgtggtgttattctttatgctcttctttgtggtacccttccatttgatgacgagaatattcccaacctttttaagaaaataaagggtggcatatatacccttcccagtcatttgtcacctttggcaagggatttgattcccagaatgcttgttgttgatcccatgaagaggatcaccatacgtgaaatccgtgaacatcagtggttcacagttggtcttccgcgttatttagctgtgccacctcctgacactgcacaacaggttaaaaagctcgacgatgaaactctgaatgatgttatcaatatggggtttgacaagaatcagctaatcgaatcacttcacaagagactgcaaaacgaggcgacagttgcctactatttactattggacaataggctgcgcacaaccagtggctaccttggagctgagttccatgaatctatggaatcttctctcgctcaagtaactccagctgagacaccaaactcagccactgatcatcggcagcatgggcatatggaatctcctgggtttggcttgaggcatcatttcgcagctgacaggaaatgggcccttggtcttcagtctcgagcacatccacgagaaataataactgaagttcttaaagctctgcaagagctaaatgtttgctggaagaagattggacattataacatgaaatgcagatggagtcctagttttcccagtcatgagagtatgatgcataacaaccatggctttggtgcagaatctgctataattgaaactgatgacagtgagaaatcaacccacactgtgaaatttgaaattcagctttacaaaacaagggatgaaaaataccttcttgacttgcaaagggtcagtggaccacagcttctctttctggacctgtgctctgcctttctaactcagctgagagtcctttaa</cdnaseq>|
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| − | AA = <aaseq>MEGAGRDGNPLGGYRIGKTLGIGSFGKVKIAEHILTGHKVAIKI LNRRKSMEMEEKVKREIKILRLFMHPHIIRLYEVIDTPADIYVVMEYVKSGELFDYIV EKGRLQEEEARRFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNVM RDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNL FKKIKGGIYTLPSHLSPLARDLIPRMLVVDPMKRITIREIREHQWFTVGLPRYLAVPP PDTAQQVKKLDDETLNDVINMGFDKNQLIESLHKRLQNEATVAYYLLLDNRLRTTSGY LGAEFHESMESSLAQVTPAETPNSATDHRQHGHMESPGFGLRHHFAADRKWALGLQSR AHPREIITEVLKALQELNVCWKKIGHYNMKCRWSPSFPSHESMMHNNHGFGAESAIIE TDDSEKSTHTVKFEIQLYKTRDEKYLLDLQRVSGPQLLFLDLCSAFLTQLRVL</aaseq>|
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| − | DNA = <dnaseqindica>3932..4045#3418..3645#3190..3330#2980..3063#2815..2904#2537..2722#2312..2443#2029..2211#1619..1803#835..855#681..828#tctctctctctctctctctctctctctctctccccgcacagccgcgccgcgccgccgtcgccttttcgggcgagggcgaagagcgagggctcctgctcgccgccgcccctccccctcgtccgcggcgcgccggaggtcaggtaggagccccccccccctccgccatccctctctcgcatacactctcactcctccctcctcttcatcatcctccaccacgttgccggcgcgaattggcccgagcgtttgggattggggacgtgggaattcctcccatcccgtcctgcttctcgtggagagagatttcgcctgcggatggattccgtacgggctctctctccgcgccgccagatccaggaggggagttcgtgcccgcgatacgctccagtgggcaatccggtttcgctttctgtaggttagctgggcaggcaattttcccatgaattgatttctgggattggggggcgagtttcagtcatctttttccgcgggataaattgatgtttgtttttgtgttcctaccgcagtaagttaaactatgcatcggtaactcgtcgagatccattgatgtgctgtaatatcgtacttaatactcctgatttgataatagctatgaagattttgtgtctcctaaagagcacaaaaatgttaatatgcttcgactgggacttaggtagaagatggagggagctggcagagatgggaaccctcttggcggttaccggattggcaaaaccctagggattgggtcatttggcaaagtgaagatcgcggagcatatattgactggtcacaaggtggcaatcaagatcctcaatcgccgtaagatcaagagcatggagatggaagagaaaggttggtactgatccctttgacccttttgttcaagatgtttgtagaatatatacgaaatgatagatacttgggtaaatatttaagatccatcacatgtttctctaaatgacatacactgctgctgatcccccaaaagcactcccattcccaaaacaagtttcatcttaggttccttgtttccagttagagggcatacatgagtaggtgcagctgggttttgcaaaaaggtgtcagggaagtaggagggcatgcatgaatcgctggtgctggtggtggtaaatttcaggtgggaagatgactgatgtggaaaaaaagggctcaaatcgtatctgggtggttgaggacagaactgtgagcctcatgttgctccatttgacaaactatgagcaaccttaggtggcacgattggttggatcaggcattaatattacaatccaaagacgtacccaaatttagcaaaaagacattatatcttgtaatttgtagtatgcaggagcacatttagttgaataacgacacaatcatatttctagagtaagacaaaaactattcattccttttgtgtaacaatgccttgtcgatcaccattcacttagcaatattctttgactatgggtctaaaatactgaatgattggtcacagttgaccagccatgatttgctgtgtaaagtgaagtctttgaaccatgttattcagtatacagtctgttgccaaacactttctatcattgatgaataatcgtgtcgtgttattcctttgcagttaaaagagaaatcaagatacttagattatttatgcacccacatatcattcgcctttatgaggtgatagacaccccagctgatatttatgttgttatggagtatgtcaaatctggagagttgtttgattacatcgttgagaagggaagactgcaagaggaagaagctcgacgctttttccagcaggtaggctttgtaccattttcctggattggtttttaaggaatacactcagtaatcccatctctagttagggtttgcacaagttctaaatgcagcaagtcactgtcaatttttcattttctgttgttgcttccgcattacagatttggtaattttttatatgcattgtactgatatgcttcagttagcatccgaggataattttcttttgtttgatctttgaattagatcatatctggtgttgaatattgccatagaaacatggtggttcatcgtgatcttaagccagagaaccttcttttggactccaaatgcaatgttaagattgcagactttggcttgagtaatgttatgcgtgatggtcactttctgaagacaagttgtggtagcccaaattatgcagcacctgaggtatttatcttgaatgatttgcattattactccttcttcatgattgcataattgcttctatctttctttacctttttcaattccttttccatttgactaggtgatatctggtaaactatatgctggccctgaagttgatgtgtggagttgtggtgttattctttatgctcttctttgtggtacccttccatttgatgacgagaatattcccaacctttttaagaaaataaaggttagcaaagatgtgatatatcctactgataaaggtgctgcctcatctccttttatatgttaaagtaaaactctgtccgttttgatgttctagggtggcatatatacccttcccagtcatttgtcacctttggcaagggatttgattcccagaatgcttgttgttgatcccatgaagaggatcaccatacgtgaaatccgtgaacatcagtggttcacagttggtcttccgcgttatttagctgtgccacctcctgacactgcacaacaggttaaaaaggtaacatgctgccattatgcatctaactatttaaagccgtattctgcttttgaaactttcagtgtttgatttgatcaatgtgagttttgtagctcgacgatgaaactctgaatgatgttatcaatatggggtttgacaagaatcagctaatcgaatcacttcacaagagactgcaaaacgaggtgtttgcttcactccattgctcctctttgttgtttcttggggaatgcatgacaaagtttctgaataatgtgcaggcgacagttgcctactatttactattggacaataggctgcgcacaaccagtggctaccttggagctgagttccatgaatctatggtatgtcaactcatctctctctctcatttattgctttctattgattccaaattcctggcaaatgtgctgttccctgtagcactacaaagtttatgataatttggtgctttgctttctgtgatccaggaatcttctctcgctcaagtaactccagctgagacaccaaactcagccactgatcatcggcagcatgggcatatggaatctcctgggtttggcttgaggcatcatttcgcagctgacaggaaatgggcccttggtcttcaggttttatgctgttactataaggttcttatttattcactttatttattataagttatcctaattcatttgtctgtatttatttaacagtctcgagcacatccacgagaaataataactgaagttcttaaagctctgcaagagctaaatgtttgctggaagaagattggacattataacatgaaatgcagatggagtcctagttttcccagtcatgagagtatgatgcataacaaccatggctttggtgcagaatctgctataattgaaactgatgacagtgagaaatcaacccacactgtgaaatttgaaattcaggtatcattttgaacttgacatatgattattaaccctgggatcatgtatcggttagaacctttgaaatgtagatctgtgcacgatctagttaagtcttacatagttacgcatgcctttactctatatgtgatgattaagctgcagagtatttatgaactgttaccatattcatattccttaaggctatttatgattgaggaagtccatataccgcatctttttttgacgtgtaaagtgtaatgtttggaatattcaatttatgctgatatacttctaattgctgcagctttacaaaacaagggatgaaaaataccttcttgacttgcaaagggtcagtggaccacagcttctctttctggacctgtgctctgcctttctaactcagctgagagtcctttaattatgccgttgtctgcttcccaactgaacttcctgcagcataccgtggattgtcacgtttcatttaagatatgtacataatgaccataatcctccagtagataatatttcctggagtgtgtagacgttagaggctgccagtgatgtattttgacggtaattggccaaaccagaggtaacaggcaggaggcaaacctttctctgtttttttatttgccgttgttgttgttatatgacggtttagacttatctagagtccttgaaccactttgcttgtttacggtgatctttactagcctgattgcccagcctgagaatcacctctgtcgttatgaaagttgagcagttggcatactattgttgatcctgcattccttgacagatgaccgttggatacatgcagagctgttatcttttttttttt</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062663.1 RefSeq:Os05g0530500]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
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| − | [[Category:Chromosome 5]]
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