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| − | {{JaponicaGene|
| + | The rice gene Os05g0530500 was reported as '''''snrk1a''''' in 2007<ref name="ref1" /> by researchers from China. |
| − | GeneName = Os05g0530500|
| |
| − | Description = OSK1|
| |
| − | Version = NM_001062663.1 GI:115465056 GeneID:4339410|
| |
| − | Length = 4468 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0530500, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os05g0530500 <=> SnRK1A/OSK1, SnRK1A, snrk1a, osk1 |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| + | * SnRK1A is an important intermediate in the sugar signaling cascade, functioning upstream from the interaction between MYBS1 and aAmy3 SRC and playing a key role in regulating seed germination and seedling growth in rice. |
| − | AP = Chromosome 5:26408336..26412803|
| + | * SnRK1A is an upstream regulator of MYBS1 and aAmy3 in the sugar signaling pathway. |
| − | CDS = 26408759..26408872,26409159..26409386,26409474..26409614,26409741..26409824,26409900..26409989<br>,26410082..26410267,26410361..26410492,26410593..26410775,26411001..26411185<br>,26411949..26411969,26411976..26412123|
| + | * SnRK1A is also necessary for the activation of MYBS1 and aAmy3 expression under glucose starvation. |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008398:26408336..26412803
| + | |
| − | source=RiceChromosome05
| + | ===Expression === |
| − | preset=GeneLocation
| + | * '''''SnRK1A''''' expression in rice is regulated by sugars at the posttranscriptional level. |
| − | </gbrowseImage1>| | + | |
| − | GSID = <gbrowseImage2>
| + | ===Evolution=== |
| − | name=NC_008398:26408336..26412803
| + | |
| − | source=RiceChromosome05
| + | You can also add sub-section(s) at will. |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | * Department of Life Sciences, National Central University, Jhongli City, Taoyuan County 320, Taiwan, Republic of China |
| − | CDNA = <cdnaseq>atggagggagctggcagagatgggaaccctcttggcggttaccggattggcaaaaccctagggattgggtcatttggcaaagtgaagatcgcggagcatatattgactggtcacaaggtggcaatcaagatcctcaatcgccgtaagagcatggagatggaagagaaagttaaaagagaaatcaagatacttagattatttatgcacccacatatcattcgcctttatgaggtgatagacaccccagctgatatttatgttgttatggagtatgtcaaatctggagagttgtttgattacatcgttgagaagggaagactgcaagaggaagaagctcgacgctttttccagcagatcatatctggtgttgaatattgccatagaaacatggtggttcatcgtgatcttaagccagagaaccttcttttggactccaaatgcaatgttaagattgcagactttggcttgagtaatgttatgcgtgatggtcactttctgaagacaagttgtggtagcccaaattatgcagcacctgaggtgatatctggtaaactatatgctggccctgaagttgatgtgtggagttgtggtgttattctttatgctcttctttgtggtacccttccatttgatgacgagaatattcccaacctttttaagaaaataaagggtggcatatatacccttcccagtcatttgtcacctttggcaagggatttgattcccagaatgcttgttgttgatcccatgaagaggatcaccatacgtgaaatccgtgaacatcagtggttcacagttggtcttccgcgttatttagctgtgccacctcctgacactgcacaacaggttaaaaagctcgacgatgaaactctgaatgatgttatcaatatggggtttgacaagaatcagctaatcgaatcacttcacaagagactgcaaaacgaggcgacagttgcctactatttactattggacaataggctgcgcacaaccagtggctaccttggagctgagttccatgaatctatggaatcttctctcgctcaagtaactccagctgagacaccaaactcagccactgatcatcggcagcatgggcatatggaatctcctgggtttggcttgaggcatcatttcgcagctgacaggaaatgggcccttggtcttcagtctcgagcacatccacgagaaataataactgaagttcttaaagctctgcaagagctaaatgtttgctggaagaagattggacattataacatgaaatgcagatggagtcctagttttcccagtcatgagagtatgatgcataacaaccatggctttggtgcagaatctgctataattgaaactgatgacagtgagaaatcaacccacactgtgaaatttgaaattcagctttacaaaacaagggatgaaaaataccttcttgacttgcaaagggtcagtggaccacagcttctctttctggacctgtgctctgcctttctaactcagctgagagtcctttaa</cdnaseq>|
| + | * Institute of Molecular Biology, Academia Sinica, Nankang, Taipei 115, Taiwan, Republic of China |
| − | AA = <aaseq>MEGAGRDGNPLGGYRIGKTLGIGSFGKVKIAEHILTGHKVAIKI LNRRKSMEMEEKVKREIKILRLFMHPHIIRLYEVIDTPADIYVVMEYVKSGELFDYIV EKGRLQEEEARRFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNVM RDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNL FKKIKGGIYTLPSHLSPLARDLIPRMLVVDPMKRITIREIREHQWFTVGLPRYLAVPP PDTAQQVKKLDDETLNDVINMGFDKNQLIESLHKRLQNEATVAYYLLLDNRLRTTSGY LGAEFHESMESSLAQVTPAETPNSATDHRQHGHMESPGFGLRHHFAADRKWALGLQSR AHPREIITEVLKALQELNVCWKKIGHYNMKCRWSPSFPSHESMMHNNHGFGAESAIIE TDDSEKSTHTVKFEIQLYKTRDEKYLLDLQRVSGPQLLFLDLCSAFLTQLRVL</aaseq>|
| + | * Department of Agronomy, National Cha-Yi University, Cha-Yi City 600, Taiwan, Republic of China |
| − | DNA = <dnaseqindica>3932..4045#3418..3645#3190..3330#2980..3063#2815..2904#2537..2722#2312..2443#2029..2211#1619..1803#835..855#681..828#tctctctctctctctctctctctctctctctccccgcacagccgcgccgcgccgccgtcgccttttcgggcgagggcgaagagcgagggctcctgctcgccgccgcccctccccctcgtccgcggcgcgccggaggtcaggtaggagccccccccccctccgccatccctctctcgcatacactctcactcctccctcctcttcatcatcctccaccacgttgccggcgcgaattggcccgagcgtttgggattggggacgtgggaattcctcccatcccgtcctgcttctcgtggagagagatttcgcctgcggatggattccgtacgggctctctctccgcgccgccagatccaggaggggagttcgtgcccgcgatacgctccagtgggcaatccggtttcgctttctgtaggttagctgggcaggcaattttcccatgaattgatttctgggattggggggcgagtttcagtcatctttttccgcgggataaattgatgtttgtttttgtgttcctaccgcagtaagttaaactatgcatcggtaactcgtcgagatccattgatgtgctgtaatatcgtacttaatactcctgatttgataatagctatgaagattttgtgtctcctaaagagcacaaaaatgttaatatgcttcgactgggacttaggtagaagatggagggagctggcagagatgggaaccctcttggcggttaccggattggcaaaaccctagggattgggtcatttggcaaagtgaagatcgcggagcatatattgactggtcacaaggtggcaatcaagatcctcaatcgccgtaagatcaagagcatggagatggaagagaaaggttggtactgatccctttgacccttttgttcaagatgtttgtagaatatatacgaaatgatagatacttgggtaaatatttaagatccatcacatgtttctctaaatgacatacactgctgctgatcccccaaaagcactcccattcccaaaacaagtttcatcttaggttccttgtttccagttagagggcatacatgagtaggtgcagctgggttttgcaaaaaggtgtcagggaagtaggagggcatgcatgaatcgctggtgctggtggtggtaaatttcaggtgggaagatgactgatgtggaaaaaaagggctcaaatcgtatctgggtggttgaggacagaactgtgagcctcatgttgctccatttgacaaactatgagcaaccttaggtggcacgattggttggatcaggcattaatattacaatccaaagacgtacccaaatttagcaaaaagacattatatcttgtaatttgtagtatgcaggagcacatttagttgaataacgacacaatcatatttctagagtaagacaaaaactattcattccttttgtgtaacaatgccttgtcgatcaccattcacttagcaatattctttgactatgggtctaaaatactgaatgattggtcacagttgaccagccatgatttgctgtgtaaagtgaagtctttgaaccatgttattcagtatacagtctgttgccaaacactttctatcattgatgaataatcgtgtcgtgttattcctttgcagttaaaagagaaatcaagatacttagattatttatgcacccacatatcattcgcctttatgaggtgatagacaccccagctgatatttatgttgttatggagtatgtcaaatctggagagttgtttgattacatcgttgagaagggaagactgcaagaggaagaagctcgacgctttttccagcaggtaggctttgtaccattttcctggattggtttttaaggaatacactcagtaatcccatctctagttagggtttgcacaagttctaaatgcagcaagtcactgtcaatttttcattttctgttgttgcttccgcattacagatttggtaattttttatatgcattgtactgatatgcttcagttagcatccgaggataattttcttttgtttgatctttgaattagatcatatctggtgttgaatattgccatagaaacatggtggttcatcgtgatcttaagccagagaaccttcttttggactccaaatgcaatgttaagattgcagactttggcttgagtaatgttatgcgtgatggtcactttctgaagacaagttgtggtagcccaaattatgcagcacctgaggtatttatcttgaatgatttgcattattactccttcttcatgattgcataattgcttctatctttctttacctttttcaattccttttccatttgactaggtgatatctggtaaactatatgctggccctgaagttgatgtgtggagttgtggtgttattctttatgctcttctttgtggtacccttccatttgatgacgagaatattcccaacctttttaagaaaataaaggttagcaaagatgtgatatatcctactgataaaggtgctgcctcatctccttttatatgttaaagtaaaactctgtccgttttgatgttctagggtggcatatatacccttcccagtcatttgtcacctttggcaagggatttgattcccagaatgcttgttgttgatcccatgaagaggatcaccatacgtgaaatccgtgaacatcagtggttcacagttggtcttccgcgttatttagctgtgccacctcctgacactgcacaacaggttaaaaaggtaacatgctgccattatgcatctaactatttaaagccgtattctgcttttgaaactttcagtgtttgatttgatcaatgtgagttttgtagctcgacgatgaaactctgaatgatgttatcaatatggggtttgacaagaatcagctaatcgaatcacttcacaagagactgcaaaacgaggtgtttgcttcactccattgctcctctttgttgtttcttggggaatgcatgacaaagtttctgaataatgtgcaggcgacagttgcctactatttactattggacaataggctgcgcacaaccagtggctaccttggagctgagttccatgaatctatggtatgtcaactcatctctctctctcatttattgctttctattgattccaaattcctggcaaatgtgctgttccctgtagcactacaaagtttatgataatttggtgctttgctttctgtgatccaggaatcttctctcgctcaagtaactccagctgagacaccaaactcagccactgatcatcggcagcatgggcatatggaatctcctgggtttggcttgaggcatcatttcgcagctgacaggaaatgggcccttggtcttcaggttttatgctgttactataaggttcttatttattcactttatttattataagttatcctaattcatttgtctgtatttatttaacagtctcgagcacatccacgagaaataataactgaagttcttaaagctctgcaagagctaaatgtttgctggaagaagattggacattataacatgaaatgcagatggagtcctagttttcccagtcatgagagtatgatgcataacaaccatggctttggtgcagaatctgctataattgaaactgatgacagtgagaaatcaacccacactgtgaaatttgaaattcaggtatcattttgaacttgacatatgattattaaccctgggatcatgtatcggttagaacctttgaaatgtagatctgtgcacgatctagttaagtcttacatagttacgcatgcctttactctatatgtgatgattaagctgcagagtatttatgaactgttaccatattcatattccttaaggctatttatgattgaggaagtccatataccgcatctttttttgacgtgtaaagtgtaatgtttggaatattcaatttatgctgatatacttctaattgctgcagctttacaaaacaagggatgaaaaataccttcttgacttgcaaagggtcagtggaccacagcttctctttctggacctgtgctctgcctttctaactcagctgagagtcctttaattatgccgttgtctgcttcccaactgaacttcctgcagcataccgtggattgtcacgtttcatttaagatatgtacataatgaccataatcctccagtagataatatttcctggagtgtgtagacgttagaggctgccagtgatgtattttgacggtaattggccaaaccagaggtaacaggcaggaggcaaacctttctctgtttttttatttgccgttgttgttgttatatgacggtttagacttatctagagtccttgaaccactttgcttgtttacggtgatctttactagcctgattgcccagcctgagaatcacctctgtcgttatgaaagttgagcagttggcatactattgttgatcctgcattccttgacagatgaccgttggatacatgcagagctgttatcttttttttttt</dnaseqindica>|
| + | * Institute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei 115, Taiwan, Republic of China |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062663.1 RefSeq:Os05g0530500]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Lu CA, Lin CC, Lee KW, Chen JL, Huang LF, Ho SL, Liu HJ, Hsing YI, Yu SM. The |
| − | [[Category:Oryza Sativa Japonica Group]] | + | SnRK1A protein kinase plays a key role in sugar signaling during germination and |
| − | [[Category:Japonica Genes]] | + | seedling growth of rice. Plant Cell. 2007 Aug;19(8):2484-99. PubMed PMID: |
| − | [[Category:Japonica Chromosome 5]]
| + | 17766403; PubMed Central PMCID: PMC2002608. |
| − | [[Category:Chromosome 5]]
| + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
