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| − | {{JaponicaGene|
| + | The rice '''Os02g0819400''' was reported as ''' lpa1''' in 2008 <ref name="ref1" /> by researchers from the USA. |
| − | GeneName = Os02g0819400|
| + | <br> |
| − | Description = Globin-like family protein|
| + | ==Annotated Information== |
| − | Version = NM_001055069.1 GI:115449712 GeneID:4331161|
| + | ===Gene Symbol=== |
| − | Length = 4838 bp|
| + | *'''Os02g0819400 <=> lpa1''' |
| − | Definition = Oryza sativa Japonica Group Os02g0819400, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *'''OsLpa1''' represents a novel gene involved in phytic acid metabolism. |
| | + | ===Mutant=== |
| | + | *This mutant exhibits a 45% reduction in rice seed phytic acid with a molar-equivalent increase in inorganic phosphorus; however, it does not appear to diVer signiWcantly in productivity from its wild-type progenitor. A second '''lpa1''' mutant was identiWed from additional screening for high seed inorganic phosphorus phenotypes. Using a positional cloning strategy, we identiWed a single candidate gene at the rice Lpa1 locus. Sequence analysis of the candidate gene from the lpa1 mutants revealed two independent mutations (a single base pair substitution and a single base pair deletion) that conWrmed the identiWcation of this candidate as the rice low phytic acid 1 gene, '''OsLpa1'''. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *USDA-ARS Crops Pathology and Genetics Research Unit,Department of Plant Sciences, University of California at Davis,One Shields Avenue, Davis, CA 95616, USA |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Department of Plant Sciences, University of California at Davis, One Shields Avenue, Davis, CA 95616, USA |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | <br> |
| − | |
| + | ==References== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | <references> |
| − | AP = Chromosome 2:36057278..36062115|
| + | <ref name="ref1"> |
| − | CDS = 36057479..36057757,36057972..36058079,36058350..36059081,36059179..36059628|
| + | The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism |
| − | GCID = <gbrowseImage1>
| + | </ref> |
| − | name=NC_008395:36057278..36062115
| + | |
| − | source=RiceChromosome02
| + | </references> |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage1>| | + | ==Structured Information== |
| − | GSID = <gbrowseImage2>
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | name=NC_008395:36057278..36062115 | |
| − | source=RiceChromosome02
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>tacttgatatggtctgtctgtttttctcagggtagtagattgggtatcacgacagtagtttctactgattccatacgccatatgatgagaggctttacggatgagaagcaaaatcctcttctctatgcatcaacctatcatgcaggcgaatgcttagaccctgttgcagttgctcaggcaaaggcaaaacggaaggcacagaagcttgacattgtttctcatcctaataccaatgaaggcagagacgacacttcagatgataaagctcatcatggatcctccgaattgcctcctagaacggagttgatcggcagcaagcaaatggcaatagaagggttcaaggcgcaaagcgagatggtaatagacagcctggacagattaattacgtcctgggaggagcagaaacaatctgtaattgttgagggagttcatctaagcctcaattttgtgatggggctaatgaagaaacacccttccataataccatttatggtatacattgcgaatgaggagaaacacatggagcgattcgctgtacgtgcaaagtacatgacactagacccagcgaagaacagatatatcaaatacatccggaacatcagagcaatccaggactacctttgtaaccgtgcagacaagcatctggtgcccaagattaacaatactaatgttgaccagagtgtggcggccatacacgccacggttttcagctgtcttcgcaggcgagaagctggggagcagttgtatgacctcaacacaaacactgtagctgtagtgaatgaggaatacaggaaccagcgtgctgctaactcactgggttccaagggaatgtttcagttgatacaaagacagggatcttcaagaaatttgatggctatccttaatactgacggtagtgtcaccaaagcttggcatgtggataaaaacaatggcaatggaagtctcgatggtacaagcagtgacaaatcaacaaaaaatcccatgtatgatacatttgggaaggcggagccagtcaatctccagttcggatctttcgggatcagtgcatggatgagtgacacaggtggcaccagccatacaggaagtgtagatgacttgagagctgatggcattgaaacgggcggcagatattattcctcatgctgcagttcaccaaaggtgtcagattgcccttcaaaagagcttatggaggatgattattcagtttttggtagcgaagaagatgctgatgatcctcctgatgctggaactgacgaagacctaactgatgaagaaagagatatgcacgagatagaagcaggctctgttgatgaacactccaccaagtccgacgaggaatacgacgatctggcaatgcaggatgtgatggagaacggttactggtccgacgacgaacaggctgcaagcagcaccaagaactcatcgaaccaggagaagaacatccatggagcagctgatggtgatgttgttgatgatgaaggcagtggcaatgacaggtttcaccacaatctggccttcttcctgaagatgtccaagaaagtagccgccacagaactgccgtgtgcatag</cdnaseq>|
| |
| − | AA = <aaseq>YLIWSVCFSQGSRLGITTVVSTDSIRHMMRGFTDEKQNPLLYAS TYHAGECLDPVAVAQAKAKRKAQKLDIVSHPNTNEGRDDTSDDKAHHGSSELPPRTEL IGSKQMAIEGFKAQSEMVIDSLDRLITSWEEQKQSVIVEGVHLSLNFVMGLMKKHPSI IPFMVYIANEEKHMERFAVRAKYMTLDPAKNRYIKYIRNIRAIQDYLCNRADKHLVPK INNTNVDQSVAAIHATVFSCLRRREAGEQLYDLNTNTVAVVNEEYRNQRAANSLGSKG MFQLIQRQGSSRNLMAILNTDGSVTKAWHVDKNNGNGSLDGTSSDKSTKNPMYDTFGK AEPVNLQFGSFGISAWMSDTGGTSHTGSVDDLRADGIETGGRYYSSCCSSPKVSDCPS KELMEDDYSVFGSEEDADDPPDAGTDEDLTDEERDMHEIEAGSVDEHSTKSDEEYDDL AMQDVMENGYWSDDEQAASSTKNSSNQEKNIHGAADGDVVDDEGSGNDRFHHNLAFFL KMSKKVAATELPCA</aaseq>|
| |
| − | DNA = <dnaseqindica>4359..4637#4037..4144#3035..3766#2488..2937#gaggtagaagaagaataaggtaggacacacacacaactccactagatttaatgacccccccttaaaattaggagaaaattaggcgaaaaacaaatccaaaagcgaagacccaagaggaagaaggttaatcaaaccaagacaagagagagagagagagaaagcaagcacagatagagagagaaacaagagagagaagaagaagaagaagaagaagggtagaagaggacgccgagagcggcagaggggtgaggccatgtgtacgccatgggcgtgcgctgcgtggacgtcgtgacacctgccgccgcccgcgcaccgccatcgccatgcccatgccgccgcaatgcgcctcctcaaaacccccttctcctcctcctcctcctcatccccacgagcacgaggtttgccaccgccgctgccgcttcttgccttgctttgatccgccgccgcgggaggcctcttcttgattcttgattttgcaggtaggggacgacatggcggaggaggcgccgccgccgccgccgccgcccaagctcctctacattgccgtctccgacgccgccgctcgccgcgccttccgctacacgcgccccgtgcttcagggcaccctccaactcatgggatgcaaggctcgccatgccttcaaggtataatacctatctatctttctatcttcttgttcatcttgatcccaacaatggaaaaactgtgcctgctctctctctctctctctctcccgcttaatttctgcctaatctggccccgatccaactggtggcgatctgattggctctctcgtgattcttccgcttcgattcgactggaaattttgctgcttctcgtatccagcgttgtgtatggtttgcacgtgctgatgtgatagatccttttgctcctttctgtgaattgcttgcttgttcttggtttaattgatagaattgcatgccgagtatagtatctggatgttgtatgttttttttttttggggggggggatggatgatcttgacaaagaaaggtgacgggttttagtgattgatgtgcagatttgttcttagctcacatccagactctctcaagtcaggtctttacacacactgctgttgatttgatcaaactctctcacatcattttcgatatctttttgcgcgagggcgttctttgcaggggaaaccggaacctttgtcaaattcgagcacccagcgcctcacttggttctgattccgcgcaatttttatgtccaaaaacccagcatatctttcaagatatgttcttgttgcatactgaacttgtcctttcggaaatatacttgtttgtgacgagtcattgtcagagatatactgccatgcaaactgttgcctagctgatgagaattactgtacctttcttggtattattatgttctatcgacaaagacaacaccatgctgtatgatgtagacctgtttgccttgcttgatctttttgccttgggcctgtagtttgatgggttgccattctagaaagtatctagcaattgacttgagttggtcatgggttcccactcggtatgcgttgttcttccctgacttggtcatggctgtttgacatctttttcctttctctgaaggcacaatttggctagctgcaaaagaaactaattgctgatgcctacttctgtagatcagactgcacaaagtgtccttttttatttctctcttgacttgtgaagataagaagtttctttttcatctttctttggcatcatcagattagcaagagggtgttcaatgtgatgaggagtgaattcttggatgcatccaaatcagatactgcagataatgaagaaaatgccccttcccttgtaaaagatgttgagatgctgaagcccaaaattttggaagcaactcttagtagcatacccttcgagttatacaagacccaaacaaccatcgttgtttctagggagaagttcctaagtgttgtatgtgatgccctctcttcatacaagtatgtggggccaaaccagaaggctgactttcttcttgcttgcaggtaacatgtttttccttgtttctgcatttataaattcagaagttacaatgagttaccaatcatcagttcattacagccaatggaaagctacctgaatgcattgaaataacaatggttttgtgcaactgtgcattttccaattgttctgttcagaattaaggagagaaaggaatcagtgacagtactcttatgtgggactagcggatgcggcaaatctacgctatcatctttgttggtatgtttatcacttacgcgaaccatacaattccggatgagtgaatgctctactgtaccagcaacatagtagtagtttgttacatgttaaagtataatgcaaaacgtctgtagaacaaaatccacttgaaaaaaaaaatcctttctagacctatcaattacctcattgctttcagaagattgtatcgcttaccgaacaatgaatgattctgggtcttgattaatacttgatatggtctgtctgtttttctcagggtagtagattgggtatcacgacagtagtttctactgattccatacgccatatgatgagaggctttacggatgagaagcaaaatcctcttctctatgcatcaacctatcatgcaggcgaatgcttagaccctgttgcagttgctcaggcaaaggcaaaacggaaggcacagaagcttgacattgtttctcatcctaataccaatgaaggcagagacgacacttcagatgataaagctcatcatggatcctccgaattgcctcctagaacggagttgatcggcagcaagcaaatggcaatagaagggttcaaggcgcaaagcgagatggtaatagacagcctggacagattaattacgtcctgggaggagcagaaacaatctgtaattgttgagggagttcatctaagcctcaattttgtggtgcgttgcgtactagttagatatttgcatcaattacttatactttgttgcatactagagaactgatgtagccttttctattttcattttccaacagatggggctaatgaagaaacacccttccataataccatttatggtatacattgcgaatgaggagaaacacatggagcgattcgctgtacgtgcaaagtacatgacactagacccagcgaagaacagatatatcaaatacatccggaacatcagagcaatccaggactacctttgtaaccgtgcagacaagcatctggtgcccaagattaacaatactaatgttgaccagagtgtggcggccatacacgccacggttttcagctgtcttcgcaggcgagaagctggggagcagttgtatgacctcaacacaaacactgtagctgtagtgaatgaggaatacaggaaccagcgtgctgctaactcactgggttccaagggaatgtttcagttgatacaaagacagggatcttcaagaaatttgatggctatccttaatactgacggtagtgtcaccaaagcttggcatgtggataaaaacaatggcaatggaagtctcgatggtacaagcagtgacaaatcaacaaaaaatcccatgtatgatacatttgggaaggcggagccagtcaatctccagttcggatctttcgggatcagtgcatggatgagtgacacaggtggcaccagccatacaggaagtgtagatgacttgagagctgatggcattgaaacgggcggcagatattattcctcatgctgcagttcaccaaaggtgtcagattgcccttcaaaagaggtatgcattggtgtgtttacagtatgataggagaaacatgctgccatcgcagacatggatctattcaatccttacatatgtttgtttcatcatttgcatttgatattccagcatatagtgcaaaaattggacgagctagcattagatgctcgtctatattcgcacgaatgttttattattaattacatgtgatacaacactgccttaacactggtttgagtagattggtgatgccataaattcgacctaacaaagaccctgacttttcagcttatggaggatgattattcagtttttggtagcgaagaagatgctgatgatcctcctgatgctggaactgacgaagacctaactgatgaagaaagagatatgcacgaggtaccaaaaaagctccctgtatgattcagcaatttcctttctagttgtgataaacacacaatatagttttcagaaactatataaaaaagaatgcaaataagaaaaaactatatccattgcagctgataattgttactaccatgctttcacttaaatgctcatggctggatttgaagaagatgctaaattcttttgcaccaatgaattcctgcagatagaagcaggctctgttgatgaacactccaccaagtccgacgaggaatacgacgatctggcaatgcaggatgtgatggagaacggttactggtccgacgacgaacaggctgcaagcagcaccaagaactcatcgaaccaggagaagaacatccatggagcagctgatggtgatgttgttgatgatgaaggcagtggcaatgacaggtttcaccacaatctggccttcttcctgaagatgtccaagaaagtagccgccacagaactgccgtgtgcatagtgcctccggtgtcaaagcaactgttgttggtccagatgtgctctgaactcggttgttatgtatcctgatgagcttacctccatgactgtaactgtaagagaggatctgctgcttgtctaagcaatacagatcacttagaatccgtgtaatccaataactcttgaaaagatgaaataataaagggtgaataaatagtttgat</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055069.1 RefSeq:Os02g0819400]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 2]] | |
| − | [[Category:Chromosome 2]]
| |
