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| − | Please input one-sentence summary here.
| + | The rice '''Os03g0106300''' was reported as ''' pair1''' in 2004 <ref name="ref1" /> by researchers from the Japan. |
| − | | + | <br> |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''Os03g0106300 <=> pair1''' |
| | + | <br> |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | *The '''PAIR1''' gene encodes a 492–amino acid protein, which contains putative coiled-coil motifs in the middle, two basic regions at both termini, and a potential nuclear localization signal at the C terminus. |
| − | | + | *The '''PAIR1''' protein plays an essential role in establishment of homologous chromosome pairing in rice meiosis. |
| | + | <br> |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | *Expression of the '''PAIR1''' gene was detected in the early stages of flower development, in which the majority of the sporocytes had not entered meiosis. |
| − | | + | <br> |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | *The '''pair1'''mutation, tagged by the endogenous retrotransposon Tos17, exhibited meiosis-specific defects and resulted in complete sterility in male and female gametes. |
| − | | + | <br> |
| − | You can also add sub-section(s) at will.
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *Experimental Farm/Plant Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan |
| | + | *Department of Life Science, Graduate University for Advanced Studies/Sokendai, Mishima, Shizuoka 411-8540, Japan |
| | + | *Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan |
| | + | <br> |
| | + | ==References== |
| | + | <references> |
| | + | <ref name="ref1"> |
| | + | The Novel Gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of Rice Encodes a Putative Coiled-Coil Protein Required for Homologous Chromosome Pairing in Meiosis |
| | + | </ref> |
| | | | |
| − | ==References==
| + | </references> |
| − | Please input cited references here.
| + | <br> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | GeneName = Os03g0106300|
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| − | Description = PAIR1 protein (HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 protein)|
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| − | Version = NM_001055219.1 GI:115450166 GeneID:4331321|
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| − | Length = 4366 bp|
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| − | Definition = Oryza sativa Japonica Group Os03g0106300, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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| − | AP = Chromosome 3:348672..353037|
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| − | CDS = 348802..348914,349203..349281,349515..349689,350095..350234,350317..350376<br>,350785..351084,351180..351232,351359..351499,351769..351919<br>,352604..352811,352883..352941|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008396:348672..353037
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| − | source=RiceChromosome03
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008396:348672..353037
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| − | source=RiceChromosome03
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgaagcttaagatgaacaaggcctgcgacatcgcctccatctccgtcctccctccccggaggaccggagggagcagcggcgcgtcggcttccggttccgtggcggtggcggtggcgtctcagccgcggtcgcagccgctctcgcagtcgcagcagtccttctcgcagggcgcctccgcctcgctcttgcactcgcagtcgcagttctcgcaggtctccctcgacgacaacctcctcaccctcctcccttcccccacccgcgatcagagatttggcttgcatgatgactcatccaagaggatgtcctctttaccagccagttcagcttcttgcgcgcgagaagagtctcagctgcaactggcaaaattaccaagcaacccagtgcaccgctggaacccctccattgcagatactagatcaggtcaggttactaatgaggatgttgagcgcaaatttcagcatctggcaagctcagtacataagatggggatggtggtagactcagtccaaagtgacgtaatgcagttaaacagagccatgaaggaggcatcattagattctggtagcatacggcaaaagattgctgtccttgaaagctcacttcagcaaattcttaagggacaagacgatctcaaagcactctttggaagcagcacaaaacacaatcctgatcagacaagtgttctgaattctctaggcagcaaattgaatgagatatcctcgacccttgcaaccttgcagacacaaatgcaagcaagacaactgcagggtgatcagacaactgttctgaattctaatgccagcaaatcgaatgagatatcctcgactcttgcaaccctgcagacacaaatgcaagcagatataagacaactgcggtgtgacgtcttcagagtttttacaaaagagatggagggggttgttagagctatcaggtctgtcaatagtaggcctgctgcaatgcaaatgatggcagaccagagttaccaagtaccagtttcaaatggatggacccagattaaccagacaccagtagcagctggaaggtctccaatgaaccgagcaccagtagcagctggaaggtcccggatgaaccaattacctgaaacaaaagtgctttctgcacatttggtttatcctgcaaaggtgacagatctgaagccaaaggtggagcagggaaaggtaaaagcagctccacaaaagccgtttgcttcgagctactacagggtggcacctaaacaggaagaggtagcgattagaaaggtcaatatacaagtgccagcaaagaaggcaccagtcagcataatcatcgagtcggatgatgacagtgaaggacgtgcgtcctgcgtgattttgaagacagaaacaggtagcaaggagtggaaagtgacaaagcaaggcaccgaagagggcctggagatcctgcggagggcgaggaagaggaggaggagagagatgcagtccatcgtgctcgcatcctag</cdnaseq>|
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| − | AA = <aaseq>MKLKMNKACDIASISVLPPRRTGGSSGASASGSVAVAVASQPRS QPLSQSQQSFSQGASASLLHSQSQFSQVSLDDNLLTLLPSPTRDQRFGLHDDSSKRMS SLPASSASCAREESQLQLAKLPSNPVHRWNPSIADTRSGQVTNEDVERKFQHLASSVH KMGMVVDSVQSDVMQLNRAMKEASLDSGSIRQKIAVLESSLQQILKGQDDLKALFGSS TKHNPDQTSVLNSLGSKLNEISSTLATLQTQMQARQLQGDQTTVLNSNASKSNEISST LATLQTQMQADIRQLRCDVFRVFTKEMEGVVRAIRSVNSRPAAMQMMADQSYQVPVSN GWTQINQTPVAAGRSPMNRAPVAAGRSRMNQLPETKVLSAHLVYPAKVTDLKPKVEQG KVKAAPQKPFASSYYRVAPKQEEVAIRKVNIQVPAKKAPVSIIIESDDDSEGRASCVI LKTETGSKEWKVTKQGTEEGLEILRRARKRRRREMQSIVLAS</aaseq>|
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| − | DNA = <dnaseqindica>4124..4236#3757..3835#3349..3523#2804..2943#2662..2721#1954..2253#1806..1858#1539..1679#1119..1269#227..434#97..155#gcaggaagaaattcaaatttgcgaatattctctctctctccccggcgaaggcgacggcgaaggagaaggctacggcgatcggcggcgatcggcggcatgaagcttaagatgaacaaggcctgcgacatcgcctccatctccgtcctccctccccggtaatccccttctgctcaatgctcatgcatgctgtgtttttgctcatggtggggtggtgtggtgtgttcaggaggaccggagggagcagcggcgcgtcggcttccggttccgtggcggtggcggtggcgtctcagccgcggtcgcagccgctctcgcagtcgcagcagtccttctcgcagggcgcctccgcctcgctcttgcactcgcagtcgcagttctcgcaggtctccctcgacgacaacctcctcaccctcctcccttcccccacccgcgatcaggtctcacctcacctcacctctcctctcctctcctctcctctccttctccccctcgctcttgtttctgccgcccaatggattttggtatttttcggtgccttactgattggggattccactcactcctgtccctgtgtgttgttcggtgtttatcagagtcttccgctgaattgccttgtggatttttggtgaaaatccatatcagattcagtattgatacagcatttgtcagttttttttatctctggtcgcagttgcaaaaaaaaaaatgtatgctgcagaacgactaatagatagtgcaaggtccaattactatgagtaggctgttcctgcaatttcagatttgttttgattactagtggtacaaattgctcactctgctgcccaccaccttgctgcacgcttgcactgataaatcagggaattgaactccgtttttgtctgtcctgtaaaactgtttgcaattgacacccacccttatacatgcagttacacgatttcattacatgaatgcctgttcctcataaattacttttgcattattcatggaagcatcattggtgcatcacaaactgagatttctgtacctgtgcatctaattacagcttgactagttagaaatggcatgtgtagtgttttgtatcttgcccattaacattcattcatgtcttcattgttgtacagagatttggcttgcatgatgactcatccaagaggatgtcctctttaccagccagttcagcttcttgcgcgcgagaagagtctcagctgcaactggcaaaattaccaagcaacccagtgcaccgctggaacccctccattgcagatactagatgtaaactctcaagacccacgcactacatctcatatatccttcatttcgtttataccagaatagcagcatttcacctgagttccaggcacactttgttttttccaactgggttctgtttttctattctgcatagaatgtaagatgatcgctgcatgcttttataatagaaagttcaattgaaatcattctttatctggactccaaatcactaagttgttgtactgccatagtattttctcatcagtataactgacagatgggtatatcagcaggtcaggttactaatgaggatgttgagcgcaaatttcagcatctggcaagctcagtacataagatggggatggtggtagactcagtccaaagtgacgtaatgcagttaaacagagccatgaaggaggcatcattagattgtaagcccctaactttcagtcataaagagttattgtgcaacttctgttttgtctatgaatttctgcactctatttctgtccttgttcagcaactggaactgaaagcaattatttttttatgtttagctggtagcatacggcaaaagattgctgtccttgaaagctcacttcagcaaattgtaaggataattgatggttcagcattttctccactttccctctttccttttcttttgtgcaacgtcagagttaacatactaccgtgttatcacagcttaagggacaagacgatctcaaagcactctttggaagcagcacaaaacacaatcctgatcagacaagtgttctgaattctctaggcagcaaattgaatgagatatcctcgacccttgcaaccttgcagacacaaatgcaagcaagacaactgcagggtgatcagacaactgttctgaattctaatgccagcaaatcgaatgagatatcctcgactcttgcaaccctgcagacacaaatgcaagcagatataagacaactgcggtgtgacgtcttcagagtttttacaaaagagatggaggtacttccagttttgatacaactctgataagtccaactgtccaagtgtctacaaattattctgaaaactatcatttgcatataaatgattatcattcttgtgtatgagcatgtgattttttttctggtatatccaaatatgacagttaagtttccatataagcatagttacctaaagttttcttctatattcaattattcatgatacttgagaacctaaggtccaatatattcagtatatgatatctttcagttttcggtttttatgagtctgatgatgtctgaaggagcaggcacaagtctgcgtgaacttaaatttgtcatgctcaaacctcatcaattcgcatagtgaaggcaaccaatgtgatgtttttgtctatatttgattgtgttttgcctgtttgcgcagggggttgttagagctatcaggtctgtcaatagtaggcctgctgcaatgcaaatgatggcagtatgtaaattcatgactcaagtaattttagccataagtcttccagtatctttctctaacttctttttggtcttggctgaaggaccagagttaccaagtaccagtttcaaatggatggacccagattaaccagacaccagtagcagctggaaggtctccaatgaaccgagcaccagtagcagctggaaggtcccggatgaaccaattacctgaaacaaaagtgtaattttctgctcttggctccttacatagttcagtcattagctatgtatttatcactactatagtatggagaattgaactgaaagacctcttgatggaatcaaattcaaatcggttttaaatccttgagatcctatttaaaatcaagtgttagaagcaattcaaaagaatgattaatattccattggtttcgttacgaagctggttaaatactgccagtttaaatctactagatagtaattattctaaattttgtataatggaacattatctcattttattggaaggaattgtgtcggtgcattccttcgagttgtgttactagcaagacttaagctaccaactgttcttcttcggatctttgttggattttctattctgacgaggattgtttgttaatgtcaggctttctgcacatttggtttatcctgcaaaggtgacagatctgaagccaaaggtggagcagggaaaggtaaaagcagctccacaaaagccgtttgcttcgagctactacagggtggcacctaaacaggaagaggtagcgattagaaaggtcaatatacaagtgccagcaaagaaggtaagccatgcagccctgctcctttctgtatcagtaacgaaagaacatgtttacaaggccaatttgttaacaagaagcatctcttgctctaattggtaatgttctaaaatcaatatcactgaatgtaccaaagtggcatagctttgtatcacgcaggtttaataaagatagtaggtggtcgccttatgttcaactcgtgatcatgtttgcttgcttgtgaatgcaaaatgcaggcaccagtcagcataatcatcgagtcggatgatgacagtgaaggacgtgcgtcctgcgtgattttgaagacagaaacaggtagctatcaaccgttgaacttcccctcgaaaagccagggtgcattcttttcgatggatgaaacccagcgggagatctaggggataagagagctgaattccatgcaaccaacaattaaaaacgatgctttcaatcactgaatctgctttgccggctgtcatggcgagtgattgcgtaatagagtagagtttcaatcatctagaatttacttacagtttgcgtttgattacccttctactgctactgctagtatttacgggttggtgcacatgtgaacatatggtgcaggtagcaaggagtggaaagtgacaaagcaaggcaccgaagagggcctggagatcctgcggagggcgaggaagaggaggaggagagagatgcagtccatcgtgctcgcatcctagctaattaatggtaacgccgcatgcatcgtcatcatcatctcaagattgactgattgttttaacataaagccaaacaaaggaaagagataaagattacgacaagacgaaattaaaaggtaaatcaaccact</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055219.1 RefSeq:Os03g0106300]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
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| − | [[Category:Chromosome 3]]
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