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| − | {{JaponicaGene|
| + | The rice '''Os03g0106300''' was reported as ''' pair1''' in 2004 <ref name="ref1" /> by researchers from the Japan. |
| − | GeneName = Os03g0106300|
| + | <br> |
| − | Description = PAIR1 protein (HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1 protein)|
| + | ==Annotated Information== |
| − | Version = NM_001055219.1 GI:115450166 GeneID:4331321|
| + | ===Gene Symbol=== |
| − | Length = 4366 bp|
| + | *'''Os03g0106300 <=> pair1''' |
| − | Definition = Oryza sativa Japonica Group Os03g0106300, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *The '''PAIR1''' gene encodes a 492–amino acid protein, which contains putative coiled-coil motifs in the middle, two basic regions at both termini, and a potential nuclear localization signal at the C terminus. |
| | + | *The '''PAIR1''' protein plays an essential role in establishment of homologous chromosome pairing in rice meiosis. |
| | + | <br> |
| | + | ===Expression=== |
| | + | *Expression of the '''PAIR1''' gene was detected in the early stages of flower development, in which the majority of the sporocytes had not entered meiosis. |
| | + | <br> |
| | + | ===Evolution=== |
| | + | *The '''pair1'''mutation, tagged by the endogenous retrotransposon Tos17, exhibited meiosis-specific defects and resulted in complete sterility in male and female gametes. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *Experimental Farm/Plant Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Department of Life Science, Graduate University for Advanced Studies/Sokendai, Mishima, Shizuoka 411-8540, Japan |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan |
| − | |
| + | <br> |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| + | ==References== |
| − | AP = Chromosome 3:348672..353037|
| + | <references> |
| − | CDS = 348802..348914,349203..349281,349515..349689,350095..350234,350317..350376<br>,350785..351084,351180..351232,351359..351499,351769..351919<br>,352604..352811,352883..352941|
| + | <ref name="ref1"> |
| − | GCID = <gbrowseImage1>
| + | The Novel Gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of Rice Encodes a Putative Coiled-Coil Protein Required for Homologous Chromosome Pairing in Meiosis |
| − | name=NC_008396:348672..353037
| + | </ref> |
| − | source=RiceChromosome03
| + | |
| − | preset=GeneLocation
| + | </references> |
| − | </gbrowseImage1>| | + | <br> |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008396:348672..353037 | + | ==Structured Information== |
| − | source=RiceChromosome03
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atgaagcttaagatgaacaaggcctgcgacatcgcctccatctccgtcctccctccccggaggaccggagggagcagcggcgcgtcggcttccggttccgtggcggtggcggtggcgtctcagccgcggtcgcagccgctctcgcagtcgcagcagtccttctcgcagggcgcctccgcctcgctcttgcactcgcagtcgcagttctcgcaggtctccctcgacgacaacctcctcaccctcctcccttcccccacccgcgatcagagatttggcttgcatgatgactcatccaagaggatgtcctctttaccagccagttcagcttcttgcgcgcgagaagagtctcagctgcaactggcaaaattaccaagcaacccagtgcaccgctggaacccctccattgcagatactagatcaggtcaggttactaatgaggatgttgagcgcaaatttcagcatctggcaagctcagtacataagatggggatggtggtagactcagtccaaagtgacgtaatgcagttaaacagagccatgaaggaggcatcattagattctggtagcatacggcaaaagattgctgtccttgaaagctcacttcagcaaattcttaagggacaagacgatctcaaagcactctttggaagcagcacaaaacacaatcctgatcagacaagtgttctgaattctctaggcagcaaattgaatgagatatcctcgacccttgcaaccttgcagacacaaatgcaagcaagacaactgcagggtgatcagacaactgttctgaattctaatgccagcaaatcgaatgagatatcctcgactcttgcaaccctgcagacacaaatgcaagcagatataagacaactgcggtgtgacgtcttcagagtttttacaaaagagatggagggggttgttagagctatcaggtctgtcaatagtaggcctgctgcaatgcaaatgatggcagaccagagttaccaagtaccagtttcaaatggatggacccagattaaccagacaccagtagcagctggaaggtctccaatgaaccgagcaccagtagcagctggaaggtcccggatgaaccaattacctgaaacaaaagtgctttctgcacatttggtttatcctgcaaaggtgacagatctgaagccaaaggtggagcagggaaaggtaaaagcagctccacaaaagccgtttgcttcgagctactacagggtggcacctaaacaggaagaggtagcgattagaaaggtcaatatacaagtgccagcaaagaaggcaccagtcagcataatcatcgagtcggatgatgacagtgaaggacgtgcgtcctgcgtgattttgaagacagaaacaggtagcaaggagtggaaagtgacaaagcaaggcaccgaagagggcctggagatcctgcggagggcgaggaagaggaggaggagagagatgcagtccatcgtgctcgcatcctag</cdnaseq>|
| |
| − | AA = <aaseq>MKLKMNKACDIASISVLPPRRTGGSSGASASGSVAVAVASQPRS QPLSQSQQSFSQGASASLLHSQSQFSQVSLDDNLLTLLPSPTRDQRFGLHDDSSKRMS SLPASSASCAREESQLQLAKLPSNPVHRWNPSIADTRSGQVTNEDVERKFQHLASSVH KMGMVVDSVQSDVMQLNRAMKEASLDSGSIRQKIAVLESSLQQILKGQDDLKALFGSS TKHNPDQTSVLNSLGSKLNEISSTLATLQTQMQARQLQGDQTTVLNSNASKSNEISST LATLQTQMQADIRQLRCDVFRVFTKEMEGVVRAIRSVNSRPAAMQMMADQSYQVPVSN GWTQINQTPVAAGRSPMNRAPVAAGRSRMNQLPETKVLSAHLVYPAKVTDLKPKVEQG KVKAAPQKPFASSYYRVAPKQEEVAIRKVNIQVPAKKAPVSIIIESDDDSEGRASCVI LKTETGSKEWKVTKQGTEEGLEILRRARKRRRREMQSIVLAS</aaseq>|
| |
| − | DNA = <dnaseqindica>4124..4236#3757..3835#3349..3523#2804..2943#2662..2721#1954..2253#1806..1858#1539..1679#1119..1269#227..434#97..155#gcaggaagaaattcaaatttgcgaatattctctctctctccccggcgaaggcgacggcgaaggagaaggctacggcgatcggcggcgatcggcggcatgaagcttaagatgaacaaggcctgcgacatcgcctccatctccgtcctccctccccggtaatccccttctgctcaatgctcatgcatgctgtgtttttgctcatggtggggtggtgtggtgtgttcaggaggaccggagggagcagcggcgcgtcggcttccggttccgtggcggtggcggtggcgtctcagccgcggtcgcagccgctctcgcagtcgcagcagtccttctcgcagggcgcctccgcctcgctcttgcactcgcagtcgcagttctcgcaggtctccctcgacgacaacctcctcaccctcctcccttcccccacccgcgatcaggtctcacctcacctcacctctcctctcctctcctctcctctccttctccccctcgctcttgtttctgccgcccaatggattttggtatttttcggtgccttactgattggggattccactcactcctgtccctgtgtgttgttcggtgtttatcagagtcttccgctgaattgccttgtggatttttggtgaaaatccatatcagattcagtattgatacagcatttgtcagttttttttatctctggtcgcagttgcaaaaaaaaaaatgtatgctgcagaacgactaatagatagtgcaaggtccaattactatgagtaggctgttcctgcaatttcagatttgttttgattactagtggtacaaattgctcactctgctgcccaccaccttgctgcacgcttgcactgataaatcagggaattgaactccgtttttgtctgtcctgtaaaactgtttgcaattgacacccacccttatacatgcagttacacgatttcattacatgaatgcctgttcctcataaattacttttgcattattcatggaagcatcattggtgcatcacaaactgagatttctgtacctgtgcatctaattacagcttgactagttagaaatggcatgtgtagtgttttgtatcttgcccattaacattcattcatgtcttcattgttgtacagagatttggcttgcatgatgactcatccaagaggatgtcctctttaccagccagttcagcttcttgcgcgcgagaagagtctcagctgcaactggcaaaattaccaagcaacccagtgcaccgctggaacccctccattgcagatactagatgtaaactctcaagacccacgcactacatctcatatatccttcatttcgtttataccagaatagcagcatttcacctgagttccaggcacactttgttttttccaactgggttctgtttttctattctgcatagaatgtaagatgatcgctgcatgcttttataatagaaagttcaattgaaatcattctttatctggactccaaatcactaagttgttgtactgccatagtattttctcatcagtataactgacagatgggtatatcagcaggtcaggttactaatgaggatgttgagcgcaaatttcagcatctggcaagctcagtacataagatggggatggtggtagactcagtccaaagtgacgtaatgcagttaaacagagccatgaaggaggcatcattagattgtaagcccctaactttcagtcataaagagttattgtgcaacttctgttttgtctatgaatttctgcactctatttctgtccttgttcagcaactggaactgaaagcaattatttttttatgtttagctggtagcatacggcaaaagattgctgtccttgaaagctcacttcagcaaattgtaaggataattgatggttcagcattttctccactttccctctttccttttcttttgtgcaacgtcagagttaacatactaccgtgttatcacagcttaagggacaagacgatctcaaagcactctttggaagcagcacaaaacacaatcctgatcagacaagtgttctgaattctctaggcagcaaattgaatgagatatcctcgacccttgcaaccttgcagacacaaatgcaagcaagacaactgcagggtgatcagacaactgttctgaattctaatgccagcaaatcgaatgagatatcctcgactcttgcaaccctgcagacacaaatgcaagcagatataagacaactgcggtgtgacgtcttcagagtttttacaaaagagatggaggtacttccagttttgatacaactctgataagtccaactgtccaagtgtctacaaattattctgaaaactatcatttgcatataaatgattatcattcttgtgtatgagcatgtgattttttttctggtatatccaaatatgacagttaagtttccatataagcatagttacctaaagttttcttctatattcaattattcatgatacttgagaacctaaggtccaatatattcagtatatgatatctttcagttttcggtttttatgagtctgatgatgtctgaaggagcaggcacaagtctgcgtgaacttaaatttgtcatgctcaaacctcatcaattcgcatagtgaaggcaaccaatgtgatgtttttgtctatatttgattgtgttttgcctgtttgcgcagggggttgttagagctatcaggtctgtcaatagtaggcctgctgcaatgcaaatgatggcagtatgtaaattcatgactcaagtaattttagccataagtcttccagtatctttctctaacttctttttggtcttggctgaaggaccagagttaccaagtaccagtttcaaatggatggacccagattaaccagacaccagtagcagctggaaggtctccaatgaaccgagcaccagtagcagctggaaggtcccggatgaaccaattacctgaaacaaaagtgtaattttctgctcttggctccttacatagttcagtcattagctatgtatttatcactactatagtatggagaattgaactgaaagacctcttgatggaatcaaattcaaatcggttttaaatccttgagatcctatttaaaatcaagtgttagaagcaattcaaaagaatgattaatattccattggtttcgttacgaagctggttaaatactgccagtttaaatctactagatagtaattattctaaattttgtataatggaacattatctcattttattggaaggaattgtgtcggtgcattccttcgagttgtgttactagcaagacttaagctaccaactgttcttcttcggatctttgttggattttctattctgacgaggattgtttgttaatgtcaggctttctgcacatttggtttatcctgcaaaggtgacagatctgaagccaaaggtggagcagggaaaggtaaaagcagctccacaaaagccgtttgcttcgagctactacagggtggcacctaaacaggaagaggtagcgattagaaaggtcaatatacaagtgccagcaaagaaggtaagccatgcagccctgctcctttctgtatcagtaacgaaagaacatgtttacaaggccaatttgttaacaagaagcatctcttgctctaattggtaatgttctaaaatcaatatcactgaatgtaccaaagtggcatagctttgtatcacgcaggtttaataaagatagtaggtggtcgccttatgttcaactcgtgatcatgtttgcttgcttgtgaatgcaaaatgcaggcaccagtcagcataatcatcgagtcggatgatgacagtgaaggacgtgcgtcctgcgtgattttgaagacagaaacaggtagctatcaaccgttgaacttcccctcgaaaagccagggtgcattcttttcgatggatgaaacccagcgggagatctaggggataagagagctgaattccatgcaaccaacaattaaaaacgatgctttcaatcactgaatctgctttgccggctgtcatggcgagtgattgcgtaatagagtagagtttcaatcatctagaatttacttacagtttgcgtttgattacccttctactgctactgctagtatttacgggttggtgcacatgtgaacatatggtgcaggtagcaaggagtggaaagtgacaaagcaaggcaccgaagagggcctggagatcctgcggagggcgaggaagaggaggaggagagagatgcagtccatcgtgctcgcatcctagctaattaatggtaacgccgcatgcatcgtcatcatcatctcaagattgactgattgttttaacataaagccaaacaaaggaaagagataaagattacgacaagacgaaattaaaaggtaaatcaaccact</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055219.1 RefSeq:Os03g0106300]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
| |
| − | [[Category:Chromosome 3]]
| |
