Difference between revisions of "Os09g0532000"

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(Created page with "{{JaponicaGene| GeneName = Os09g0532000| Description = Conserved hypothetical protein| Version = NM_001070293.2 GI:297609845 GeneID:4347672| Length = 2356 bp| Definition ...")
 
 
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{{JaponicaGene|
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The rice gene Os09g0532000 was reported as '''''sgr''''' in 2007<ref name="ref1" /> by researchers from Korea.
GeneName = Os09g0532000|
 
Description = Conserved hypothetical protein|
 
Version = NM_001070293.2 GI:297609845 GeneID:4347672|
 
Length = 2356 bp|
 
Definition = Oryza sativa Japonica Group Os09g0532000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os09g0532000 <=> sgr(t), sgr, OsSGR
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
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* '''''Sgr''''' is a senescence-associated gene encoding a novel chloroplast protein.
AP = Chromosome 9:21700364..21702719|
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* In senescing leaves, '''''Sgr''''' regulates Chl degradation by inducing LHCPII disassembly through direct interaction, leading to the degradation of Chls and Chl-free LHCPII by catabolic enzymes and proteases, respectively.
CDS = 21700789..21701124,21701876..21702223,21702329..21702469|
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===Mutation===
GCID = <gbrowseImage1>
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* Transgenic rice overexpressing Sgr produces yellowish-brown leaves, and Arabidopsis thaliana pheophorbide a oxygenase–impaired mutants exhibiting a stay-green phenotype during dark-induced senescence have reduced expression of Sgr homologs, indicating that Sgr regulates Chl degradation at the transcriptional level. The researchers show that the leaf staygreenness of the sgr mutant is associated with a failure in the destabilization of the light-harvesting chlorophyll binding protein (LHCP) complexes of the thylakoid membranes, which is a prerequisite event for the degradation of Chls and LHCPs during senescence. Transient overexpression of Sgr in Nicotiana benthamiana and an in vivo pull-down assay show that Sgr interacts with LHCPII, indicating that the Sgr-LHCPII complexes are formed in the thylakoid membranes.
name=NC_008402:21700364..21702719
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[[File:Os09g0532000-1.png|center|thumb|400px|'''Figure 1. Phenotypic Characterization of sgr during Natural and Dark-Induced Senescence.''' '' <ref name="ref1" />.'']]
source=RiceChromosome09
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===Sublocalization===
preset=GeneLocation
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* The researchers introduced Pro35S:Sgr- GFP into protoplasts of Arabidopsis and showed that the green fluorescence by GFP colocalized with the red autofluorescence of Chls, indicating that Sgr is a chloroplast protein
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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===Evolution===
name=NC_008402:21700364..21702719
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source=RiceChromosome09
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You can also add sub-section(s) at will.
preset=GeneLocation
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==Labs working on this gene==
</gbrowseImage2>|
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* Department of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul
CDNA = <cdnaseq>atggctgctgctacttcgaccatgtccctgcttcctcccatcacccagcagcagcggtggcacgccgccgactccctcgtcgtcctcgcctcccgctgccacaactctcgccgccgccgccgctgccgctacgtcgtgccgagggcgaggctgttcgggccggcgatcttcgaggcgtcgaagctgaaggtgctgttcctgggggtggacgaggagaagcaccagcacccggggaagctgccgcggacgtacacgctgacgcacagcgacgtgacggcgaggctgacgctggcggtgtcgcacaccatcaaccgggcgcagctgcaggggtggtacaacaagctgcagcgggacgaggtggtggcggagtggaagaaggtgcagggccacatgtcgctgcacgtccactgccacatctccggcggccacgtcctcctcgacctcatcgccggcctccgctactacatcttccgcaaggagctccccgtggttctgaaggcgttcgtccacggcgacggcaacctgttcagccggcacccggagctggaggaggccacggtgtgggtctacttccactccaacctcccacgcttcaaccgcgtcgagtgctggggcccgctccgcgacgccggagcgccgcccgaggaagacgacgccgtcgccgccgcggcggccgaggaggcggcggcggagcagatgcccgcggccggcgagtggccgcggcggtgcccggggcagtgcgactgctgcttcccgccatacagcctcatcccctggccgcaccagcacgacgtcgccgccgccgacggccagccgcagcagtga</cdnaseq>|
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151-921, Korea
AA = <aaseq>MAAATSTMSLLPPITQQQRWHAADSLVVLASRCHNSRRRRRCRY                    VVPRARLFGPAIFEASKLKVLFLGVDEEKHQHPGKLPRTYTLTHSDVTARLTLAVSHT                    INRAQLQGWYNKLQRDEVVAEWKKVQGHMSLHVHCHISGGHVLLDLIAGLRYYIFRKE                    LPVVLKAFVHGDGNLFSRHPELEEATVWVYFHSNLPRFNRVECWGPLRDAGAPPEEDD                    AVAAAAAEEAAAEQMPAAGEWPRRCPGQCDCCFPPYSLIPWPHQHDVAAADGQPQQ</aaseq>|
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* Graduate School of Biotechnology and Plant Metabolism Research Center, Kyung Hee University, Yongin 449-701, Korea
DNA = <dnaseqindica>1596..1931#497..844#251..391#gagaagccaatccgcgaagctaccaaaccgagccaaaattttgatcgatcgatcggccggccggtgtctttgttgaggcgtgcaaggctcgtgctttcgccgagagggattaattagccgcgcctccagcatctccggcctccatagagatcccagcttataattaaagctgtcaagagtcgttttggttgttaggcttaaagttaactactgctggctagctaggactaagagatccgagggagcagacatggctgctgctacttcgaccatgtccctgcttcctcccatcacccagcagcagcggtggcacgccgccgactccctcgtcgtcctcgcctcccgctgccacaactctcgccgccgccgccgctgccgctacgtcgtgccggtacgtacatgcaccatcctctttcttctccggtgaatcaatggttggagaagaagaatccgaatgaaatgtaaattaaatatgtatgtggatgtggtggtgcagagggcgaggctgttcgggccggcgatcttcgaggcgtcgaagctgaaggtgctgttcctgggggtggacgaggagaagcaccagcacccggggaagctgccgcggacgtacacgctgacgcacagcgacgtgacggcgaggctgacgctggcggtgtcgcacaccatcaaccgggcgcagctgcaggggtggtacaacaagctgcagcgggacgaggtggtggcggagtggaagaaggtgcagggccacatgtcgctgcacgtccactgccacatctccggcggccacgtcctcctcgacctcatcgccggcctccgctactacatcttccgcaaggagctccccgtggtacgtacgtggcccctttcctcgtcgctcgctttactgatgctctcttcttctttcagacttggagaccacaagcttttttccttttttttttcccctttgctcttttcatttttgcaatcaagacgtactctgtgtcaatgtccctgagataattgatgggatccaataattcttgtctgctaaagcaggcaaatcccttgactttctagatctgattttagacactgttattagtggcaccaaaaactgatctccaacaagtaggggaaacaattttaatctctcagattggcatccatccatctgttacatatcaattaaatcgttataaaaaaaattaaaatatttgataatatagattcacatataatatgtaagtttaaattcgacttttataagttgtaataaatataaccaatcaaactctaattagtttactatgttcactgttaaatttgttacttttattataacttgtataagtcaaatgtcaaatttaaacttatatgtttgtggtgcaatatattatatgttaatctattttatcaactttttaagaatattatatactagtgaaattaatcaactgtgttcaaagttgcatgcccacttgacacgtgccaaacacgacttggaagttcagatgtgagaataaaaatcgaaatttttgaacagcttcctgaaattgattaattcgagcctaatcgcttgctttggttgaccgttgactcggcgcgtgttcggccaggttctgaaggcgttcgtccacggcgacggcaacctgttcagccggcacccggagctggaggaggccacggtgtgggtctacttccactccaacctcccacgcttcaaccgcgtcgagtgctggggcccgctccgcgacgccggagcgccgcccgaggaagacgacgccgtcgccgccgcggcggccgaggaggcggcggcggagcagatgcccgcggccggcgagtggccgcggcggtgcccggggcagtgcgactgctgcttcccgccatacagcctcatcccctggccgcaccagcacgacgtcgccgccgccgacggccagccgcagcagtgacggcggcgccgccgcgattcgtagattagcgaattcgtttggttgccatggtacacctacacgcatgcaatgtcgccaaatgacgctgcgtgctttgcgttaaattctttaattattcgtagtggcatttagctcagctcagctcagctctgcaattagcacatatttgattagctttagggaatgagtgtggtgagcttgtaaatagaagaacactagtagatggcaagcaaatggaaacgatcgatgatgcagtagatgttactgcaaaaatggcaattattagatgaagtcgacacacaaagacagatctcgtttcatttgtacattctacagtctacgtcgatgaggacatgactggatttgtatagcaaattagtactagcagctaataagtgtggattaattatgaaacacgattgttt</dnaseqindica>|
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* Department of Biology, Chungnam National University, Daejeon 305-764, Korea
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070293.2 RefSeq:Os09g0532000]|
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==References==
}}
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<references>
[[Category:Genes]]
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* <ref name="ref1">
[[Category:Japonica mRNA]]
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Park SY, Yu JW, Park JS, Li J, Yoo SC, Lee NY, Lee SK, Jeong SW, Seo HS, Koh
[[Category:Oryza Sativa Japonica Group]]
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HJ, Jeon JS, Park YI, Paek NC. The senescence-induced staygreen protein regulates
[[Category:Japonica Genes]]
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chlorophyll degradation. Plant Cell. 2007 May;19(5):1649-64. PubMed PMID:
[[Category:Japonica Chromosome 9]]
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17513504; PubMed Central PMCID: PMC1913741.
[[Category:Chromosome 9]]
+
 
 +
</ref>
 +
</references>
 +
 
 +
 
 +
==Structured Information==
 +
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]

Latest revision as of 07:54, 23 November 2016

The rice gene Os09g0532000 was reported as sgr in 2007[1] by researchers from Korea.

Annotated Information

Gene Symbol

  • Os09g0532000 <=> sgr(t), sgr, OsSGR

Function

  • Sgr is a senescence-associated gene encoding a novel chloroplast protein.
  • In senescing leaves, Sgr regulates Chl degradation by inducing LHCPII disassembly through direct interaction, leading to the degradation of Chls and Chl-free LHCPII by catabolic enzymes and proteases, respectively.

Mutation

  • Transgenic rice overexpressing Sgr produces yellowish-brown leaves, and Arabidopsis thaliana pheophorbide a oxygenase–impaired mutants exhibiting a stay-green phenotype during dark-induced senescence have reduced expression of Sgr homologs, indicating that Sgr regulates Chl degradation at the transcriptional level. The researchers show that the leaf staygreenness of the sgr mutant is associated with a failure in the destabilization of the light-harvesting chlorophyll binding protein (LHCP) complexes of the thylakoid membranes, which is a prerequisite event for the degradation of Chls and LHCPs during senescence. Transient overexpression of Sgr in Nicotiana benthamiana and an in vivo pull-down assay show that Sgr interacts with LHCPII, indicating that the Sgr-LHCPII complexes are formed in the thylakoid membranes.
Figure 1. Phenotypic Characterization of sgr during Natural and Dark-Induced Senescence. [1].

Sublocalization

  • The researchers introduced Pro35S:Sgr- GFP into protoplasts of Arabidopsis and showed that the green fluorescence by GFP colocalized with the red autofluorescence of Chls, indicating that Sgr is a chloroplast protein

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul

151-921, Korea

  • Graduate School of Biotechnology and Plant Metabolism Research Center, Kyung Hee University, Yongin 449-701, Korea
  • Department of Biology, Chungnam National University, Daejeon 305-764, Korea

References

  1. 1.0 1.1 Park SY, Yu JW, Park JS, Li J, Yoo SC, Lee NY, Lee SK, Jeong SW, Seo HS, Koh HJ, Jeon JS, Park YI, Paek NC. The senescence-induced staygreen protein regulates chlorophyll degradation. Plant Cell. 2007 May;19(5):1649-64. PubMed PMID: 17513504; PubMed Central PMCID: PMC1913741.


Structured Information