Difference between revisions of "Os06g0116400"

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Please input one-sentence summary here.
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The rice gene Os06g0116400 was reported as '''''ZN''''' in 2010<ref name="ref1" /> by researchers from Korea, China and Azerbaijan.
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os06g0116400 <=> ZN, OsZN
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===Function===
 
===Function===
Please input function information here.
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* '''''ZN''''' encodes a thylakoid-bound protein which is essential for chloroplast biogenesis during early leaf development.
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* '''''ZN''''' is required for protecting developing chloroplasts, especially during the assembly of thylakoid protein complexes, from incidental light after darkness.
  
===Expression===
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===Mutation===
Please input expression information here.
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* '''''zn''''' phenotype is formed by unequal impairment of chloroplast biogenesis before emergence from the leaf sheath under alternate light/dark or high/low temperatures (restrictive), but not under constant light and temperature (permissive) conditions.
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===Expression ===
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* Expression analyses of OsZN showed that it is expressed only in the shoot organs, with the highest levels found in younger leaf tissues, but not in the roots.
  
 
===Evolution===
 
===Evolution===
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
 
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences,
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Seoul National University, Seoul 151-921, Korea,
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*Key Laboratory of Crop Genomics and Genetic Improvement of Ministry of Agriculture and Beijing Key Lab of Crop Genetic
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Improvement, China Agriculture University, Beijing 100094, China,
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*Department of Molecular Biology, Pusan National University, Busan 609-735, Korea, and
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*Institute of Botany, Azerbaijan National Academy of Sciences, Baku AZ 1073, Azerbaijan
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==References==
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<references>
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* <ref name="ref1">
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Li J, Pandeya D, Nath K, Zulfugarov IS, Yoo SC, Zhang H, Yoo JH, Cho SH, Koh
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HJ, Kim DS, Seo HS, Kang BC, Lee CH, Paek NC. ZEBRA-NECROSIS, a thylakoid-bound
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protein, is critical for the photoprotection of developing chloroplasts during
 +
early leaf development. Plant J. 2010 May 1;62(4):713-25. doi:
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10.1111/j.1365-313X.2010.04183.x. PubMed PMID: 20202171.
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</ref>
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</references>
  
==References==
 
Please input cited references here.
 
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
GeneName = Os06g0116400|
 
Description = High-affinity nickel-transporter family protein|
 
Version = NM_001063155.1 GI:115466041 GeneID:4339930|
 
Length = 1467 bp|
 
Definition = Oryza sativa Japonica Group Os06g0116400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
 
AP = Chromosome 6:907857..909323|
 
CDS = 907995..908813,909002..909286|
 
GCID = <gbrowseImage1>
 
name=NC_008399:907857..909323
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008399:907857..909323
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggcaatggagaggcttatctcttcgccgctcctcccgcgccggcctccccgcgccgccttctcccgcccgccgccctccctcgccgccgcgccaccccaccaccgcgccggcggtgcggcctccgggtacggctccaggccgcctctcgcctcgctcctcctctccaggcaccaccaccaccaccagcctccggtcctcgcggccaatcctgctgccgatgtggccgccggcgaggctgtccctcccgccaccgccaccgccagccggcgcttcctccagaaggtggcgtcggctgcggctgccactctgttggcgacgattgcactgacgctgatccagccggcgtgggcgccgccggcgttggcgtcgttccactcggcggcgaaggcgggaggtggcatcttcaagtcggagctgctcagcagcgcgtggacggggttcctggccggctgcctgcacacgctctccgggccggaccacctcgccgcgctggcgccgctgtccatcgggaggtcgcgggtggagagcgccgccgtgggcgcgctctggggctgcggccacgacgccggccaggtcatcttcggcctcctgttcctcagcctcaaggaccgcctccacatcgaggtcatccgaacgtgggggacccgcgtcgtcggcctcacgctgctcgtcatcggcgccctcggcatcagggaggccaccgaggtgcccacgccgtgcgtcgcgctggagaacggcggcggcggcggcggcgcgcaccgtggcccgctcgatgctctaccagccaccaggaagaagatcaccttcgccacgttcgccaccgggatcgtgcacgggctgcagcccgacgcgctcatgatggtcctgccggcgctcgccctcccgtcgcgcgtcgccggcgcggcgttccttggcatgttcctcgtcggcaccgtggtcgccatgggcagctacaccgtcctgatcggctcttgtacggaggcgctcaaggagagggttcccaggatcacggagaagctgacatgggctgcctcgctcgtggccatctccatgggcctcggcatcctcatcagccagtctctcggctttagcttgtactga</cdnaseq>|
 
AA = <aaseq>MAMERLISSPLLPRRPPRAAFSRPPPSLAAAPPHHRAGGAASGY                    GSRPPLASLLLSRHHHHHQPPVLAANPAADVAAGEAVPPATATASRRFLQKVASAAAA                    TLLATIALTLIQPAWAPPALASFHSAAKAGGGIFKSELLSSAWTGFLAGCLHTLSGPD                    HLAALAPLSIGRSRVESAAVGALWGCGHDAGQVIFGLLFLSLKDRLHIEVIRTWGTRV                    VGLTLLVIGALGIREATEVPTPCVALENGGGGGGAHRGPLDALPATRKKITFATFATG                    IVHGLQPDALMMVLPALALPSRVAGAAFLGMFLVGTVVAMGSYTVLIGSCTEALKERV                    PRITEKLTWAASLVAISMGLGILISQSLGFSLY</aaseq>|
 
DNA = <dnaseqindica>511..1329#38..322#ctcccgagacgaaccacccgaagccgcagcagcagcgatggcaatggagaggcttatctcttcgccgctcctcccgcgccggcctccccgcgccgccttctcccgcccgccgccctccctcgccgccgcgccaccccaccaccgcgccggcggtgcggcctccgggtacggctccaggccgcctctcgcctcgctcctcctctccaggcaccaccaccaccaccagcctccggtcctcgcggccaatcctgctgccgatgtggccgccggcgaggctgtccctcccgccaccgccaccgccagccggcgcttcctccagaaggtgagcgcctcgttgcccgccagttttccgtgtcgcgcctcactcgttcttgcatgtctcgtgtgatgattactgatgtgaatttcttcttcttcttccaagaattgcttctgttttgtgatgttgttgtggtcggaggagtccaagagttagcggagattattgagctcacgcgtttggtttgacaggtggcgtcggctgcggctgccactctgttggcgacgattgcactgacgctgatccagccggcgtgggcgccgccggcgttggcgtcgttccactcggcggcgaaggcgggaggtggcatcttcaagtcggagctgctcagcagcgcgtggacggggttcctggccggctgcctgcacacgctctccgggccggaccacctcgccgcgctggcgccgctgtccatcgggaggtcgcgggtggagagcgccgccgtgggcgcgctctggggctgcggccacgacgccggccaggtcatcttcggcctcctgttcctcagcctcaaggaccgcctccacatcgaggtcatccgaacgtgggggacccgcgtcgtcggcctcacgctgctcgtcatcggcgccctcggcatcagggaggccaccgaggtgcccacgccgtgcgtcgcgctggagaacggcggcggcggcggcggcgcgcaccgtggcccgctcgatgctctaccagccaccaggaagaagatcaccttcgccacgttcgccaccgggatcgtgcacgggctgcagcccgacgcgctcatgatggtcctgccggcgctcgccctcccgtcgcgcgtcgccggcgcggcgttccttggcatgttcctcgtcggcaccgtggtcgccatgggcagctacaccgtcctgatcggctcttgtacggaggcgctcaaggagagggttcccaggatcacggagaagctgacatgggctgcctcgctcgtggccatctccatgggcctcggcatcctcatcagccagtctctcggctttagcttgtactgatccgccatccctcgcgacacctccttcttcttcttcgccattgttaagcttccactgcctccactgtaggaatctgccatgagaattttgcaaatgttgcttgttgagatccaggagaattcaagtttagttcacaag</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063155.1 RefSeq:Os06g0116400]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 6]]
 
[[Category:Chromosome 6]]
 

Latest revision as of 05:32, 10 December 2016

The rice gene Os06g0116400 was reported as ZN in 2010[1] by researchers from Korea, China and Azerbaijan.

Annotated Information

Gene Symbol

  • Os06g0116400 <=> ZN, OsZN

Function

  • ZN encodes a thylakoid-bound protein which is essential for chloroplast biogenesis during early leaf development.
  • ZN is required for protecting developing chloroplasts, especially during the assembly of thylakoid protein complexes, from incidental light after darkness.

Mutation

  • zn phenotype is formed by unequal impairment of chloroplast biogenesis before emergence from the leaf sheath under alternate light/dark or high/low temperatures (restrictive), but not under constant light and temperature (permissive) conditions.

Expression

  • Expression analyses of OsZN showed that it is expressed only in the shoot organs, with the highest levels found in younger leaf tissues, but not in the roots.

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences,

Seoul National University, Seoul 151-921, Korea,

  • Key Laboratory of Crop Genomics and Genetic Improvement of Ministry of Agriculture and Beijing Key Lab of Crop Genetic

Improvement, China Agriculture University, Beijing 100094, China,

  • Department of Molecular Biology, Pusan National University, Busan 609-735, Korea, and
  • Institute of Botany, Azerbaijan National Academy of Sciences, Baku AZ 1073, Azerbaijan

References

  1. Li J, Pandeya D, Nath K, Zulfugarov IS, Yoo SC, Zhang H, Yoo JH, Cho SH, Koh HJ, Kim DS, Seo HS, Kang BC, Lee CH, Paek NC. ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development. Plant J. 2010 May 1;62(4):713-25. doi: 10.1111/j.1365-313X.2010.04183.x. PubMed PMID: 20202171.


Structured Information