Difference between revisions of "Os06g0677000"
(Created page with "{{JaponicaGene|
GeneName = Os06g0677000|
Description = Patatin family protein|
Version = NM_001064889.2 GI:297606353 GeneID:4341835|
Length = 1770 bp|
Definition = Oryza ...") |
(→Mutation) |
||
| (6 intermediate revisions by 3 users not shown) | |||
| Line 1: | Line 1: | ||
| − | + | The rice gene Os06g0677000 was reported as '''''dep3''''' in 2011<ref name="ref1" /> by researchers from Korea, China and USA. | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | + | ==Annotated Information== | |
| − | + | ===Gene Symbol=== | |
| − | + | *'''''Os06g0677000 <=> dep3, OspPLAIIIdelta, pPLAIIIdelta | |
| − | + | ||
| − | + | ===Function=== | |
| − | + | * The '''''DEP3''''' gene was identified as the candidate via a map-based cloning approach and was predicted to encode a patatin-like phospholipase A2 (PLA2) superfamily domain-containing protein. | |
| − | + | ||
| − | + | * The patatin-like PLA2 might play a significant role in the formation of vascular bundles, and that the dep3 mutant may provide another EP resource for rice breeding programs. | |
| − | + | ||
| − | + | ===Mutation=== | |
| − | + | [[File:Os06g0677000-1.png|right|thumb|200px|'''Fig. 1 Phenotype of the dep3 mutant.''' '' <ref name="ref1" />.'']] | |
| − | + | * The panicle of the dep3 mutant remained erect from flowering to full maturation, whereas the panicle of the wild type plant began to droop after flowering. The dep3 mutation also regulated other panicle characteristics, including panicle length, grain shape and grain number per panicle. Anatomical observations revealed that the dep3 mutant had more small vascular bundles and a thicker culm than wild type plants, explaining the EP phenotype. | |
| − | + | ||
| − | + | ===Expression === | |
| − | + | ||
| − | + | ===Evolution=== | |
| − | + | ||
| − | < | + | You can also add sub-section(s) at will. |
| − | + | ==Labs working on this gene== | |
| − | + | * Department of Plant Science, Research Institute of Agriculture and Life Sciences, Plant Genomics and Breeding Institute, Seoul National University, Seoul 151-921, Korea | |
| − | + | *Key Laboratory of Crop Germplasm Resources and Biotechnology, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China | |
| − | + | *Department of Plant Pathology and Microbiology, Institute for Integrative Genomic Biology, University of California, Riverside, CA 92521, USA | |
| − | + | ||
| − | [[Category:Genes]] | + | ==References== |
| − | + | <references> | |
| − | [[Category:Oryza Sativa Japonica Group]] | + | * <ref name="ref1"> |
| − | + | Qiao Y, Piao R, Shi J, Lee SI, Jiang W, Kim BK, Lee J, Han L, Ma W, Koh HJ. | |
| − | [[Category:Japonica | + | Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, |
| − | + | which confers high grain yield in rice (Oryza sativa L.). Theor Appl Genet. 2011 | |
| + | May;122(7):1439-49. doi: 10.1007/s00122-011-1543-6. PubMed PMID: 21318372. | ||
| + | </ref> | ||
| + | </references> | ||
| + | |||
| + | |||
| + | ==Structured Information== | ||
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] | ||
Latest revision as of 12:40, 10 December 2016
The rice gene Os06g0677000 was reported as dep3 in 2011[1] by researchers from Korea, China and USA.
Contents
Annotated Information
Gene Symbol
- Os06g0677000 <=> dep3, OspPLAIIIdelta, pPLAIIIdelta
Function
- The DEP3 gene was identified as the candidate via a map-based cloning approach and was predicted to encode a patatin-like phospholipase A2 (PLA2) superfamily domain-containing protein.
- The patatin-like PLA2 might play a significant role in the formation of vascular bundles, and that the dep3 mutant may provide another EP resource for rice breeding programs.
Mutation
Fig. 1 Phenotype of the dep3 mutant. [1].
- The panicle of the dep3 mutant remained erect from flowering to full maturation, whereas the panicle of the wild type plant began to droop after flowering. The dep3 mutation also regulated other panicle characteristics, including panicle length, grain shape and grain number per panicle. Anatomical observations revealed that the dep3 mutant had more small vascular bundles and a thicker culm than wild type plants, explaining the EP phenotype.
Expression
Evolution
You can also add sub-section(s) at will.
Labs working on this gene
- Department of Plant Science, Research Institute of Agriculture and Life Sciences, Plant Genomics and Breeding Institute, Seoul National University, Seoul 151-921, Korea
- Key Laboratory of Crop Germplasm Resources and Biotechnology, Ministry of Agriculture, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- Department of Plant Pathology and Microbiology, Institute for Integrative Genomic Biology, University of California, Riverside, CA 92521, USA
References
- ↑ 1.0 1.1 Qiao Y, Piao R, Shi J, Lee SI, Jiang W, Kim BK, Lee J, Han L, Ma W, Koh HJ. Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.). Theor Appl Genet. 2011 May;122(7):1439-49. doi: 10.1007/s00122-011-1543-6. PubMed PMID: 21318372.
