Difference between revisions of "Os11g0528700"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os11g0528700| Description = Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17...")
 
 
(4 intermediate revisions by 3 users not shown)
Line 1: Line 1:
{{JaponicaGene|
+
The rice gene Os11g0528700 was reported as '''''tld1''''' in 2009<ref name="ref1" /> by researchers from China.
GeneName = Os11g0528700|
 
Description = Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17)|
 
Version = NM_001074537.1 GI:115485722 GeneID:4350632|
 
Length = 1561 bp|
 
Definition = Oryza sativa Japonica Group Os11g0528700, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
+
==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
*'''''Os11g0528700 <=> TLD1, OsGH3.13
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
 
|
+
===Function===
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
+
* '''''TLD1''''' is a rice GH3.13 gene that encodes indole-3-acetic acid (IAA)-amido synthetase, which is suppressed in aboveground tissues under normal conditions but which is dramatically induced by drought stress.
AP = Chromosome 11:21016365..21017925|
+
* The activation of TLD1 reduced the IAA maxima at the lamina joint, shoot base, and nodes, resulting in subsequent alterations in plant architecture and tissue patterning but enhancing drought tolerance.
CDS = 21016365..21017256,21017316..21017417,21017510..21017925|
+
===Mutation===
GCID = <gbrowseImage1>
+
* The tld1-D mutant shows an increased number of tillers, enlarged leaf angles, and dwarfism.
name=NC_008404:21016365..21017925
+
* The decreased level of free IAA in tld1-D due to the conjugation of IAA with amino acids greatly facilitated the accumulation of late-embryogenesis abundant mRNA compared with the wild type.
source=RiceChromosome11
+
===Expression ===
preset=GeneLocation
+
* To understand the native roles of TLD1 in rice physiology and development, The researchers analyzed the '''''TLD1''''' expression pattern under normal conditions. Although TLD1 was expressed in all of the tissues examined, the level of transcription as determined by RT-PCR was low in the aboveground organs but relatively high in the roots
</gbrowseImage1>|
+
 
GSID = <gbrowseImage2>
+
===Evolution===
name=NC_008404:21016365..21017925
+
 
source=RiceChromosome11
+
You can also add sub-section(s) at will.
preset=GeneLocation
+
==Labs working on this gene==
</gbrowseImage2>|
+
* Institute of Molecular Cell Biology, Hebei Normal University, Shijiazhuang, Hebei, China 050016 (S.-W.Z., C.-H.L., J.C., S.-Q.Z., D.-Y.S., Y.S.);
CDNA = <cdnaseq>atgacgtccacgtcgtctgaaaatgcgcccgaccacgaccacgaccacgacgcctcttcgccggcgccggcgacggcgacggcggcggcgctgccaccgatgatcccggcgtgcgacccgcacgacgggccggcgtgcctggagctcatcgaggtgctgaccacgcgcgccgccgccgtccagcggcgcgtcctcgccgaggtcctcgccatgaacaccggcaccgactacctccgccggtttctcggcgacgaggtcgtcgccgccgccggcggcgaggacgagctcgccgcggcgttcaaggagcgcgtgccggtggtggagtacgaggacgtgaagccgtacatcgagcgcatcgccaacggcgccccgtcgtcgctcatctcctccaagcccatcaccgagctcctcacgagctccggcacgtcaggcgggcagccgaagctgatgccggcgacggaggaggagctcgaccgcaagaccttcctctacaacctcctcgtccccgtcatgaacaagtacgtggaggggctggacgaggggagggggatgtacctgctgttcgtgaagccggagatcacgacggcgtcggggatggtggcgaggccggtgctgacgagctactacaagagccgccacttccggcggcggccggacagcccgtacacgcggtacacgagccccgacgcggcgatcctctgcccggacagccgccagagcatgtacgcgcagctgctctgcggcctcgcccgccgcggcgaggtgctccgcgtcggcgccgtcttcgcctccgccttcctccgcgccgtcaagttcctcgagggccactggcgcgccctctgcgccgacatccgcgccggccgcgccgacccggccgtcgtcaccgacgccgcctgccgcggcgccgtcgacgccgtcctcgccgcccgcgccgaccccgacctcgccgacgccatcgccgccgagtgtggcggcgcgtcgtggcggggcatcgtgcggcggctgtggccgcggaccaagtacatcgacgtgatcgtgacggggtccatggcgcagtacatcccgctgctggagttctacggcggcgggctgccgctggtgtcgacgatgtacgcgtcgtcggagtcctacttcggcatcaacctccggccgctggacccgccggaggaggtggtgtacacgctgctgcccaacatgtgctactacgagttcatcaaggtggagaaggacggcgacggcgagaaggtccgcgacggcgaggtggtggacctcgtcggcgtcgaggtcggcgcctactacgagctcgtcgtcaccaccttcacaggtgagcgcgtgtgcagcccgttcgatttctttcccacctcctgcatgggtttatcaacgccgtccgatcgcaaaatcaacggctga</cdnaseq>|
+
* Key Laboratory of Hebei Molecular Cell Biology, Shijiazhuang, Hebei, China 050016 (S.-W.Z., S.-Q.Z., D.-Y.S., Y.S.);
AA = <aaseq>MTSTSSENAPDHDHDHDASSPAPATATAAALPPMIPACDPHDGP                    ACLELIEVLTTRAAAVQRRVLAEVLAMNTGTDYLRRFLGDEVVAAAGGEDELAAAFKE                    RVPVVEYEDVKPYIERIANGAPSSLISSKPITELLTSSGTSGGQPKLMPATEEELDRK                    TFLYNLLVPVMNKYVEGLDEGRGMYLLFVKPEITTASGMVARPVLTSYYKSRHFRRRP                    DSPYTRYTSPDAAILCPDSRQSMYAQLLCGLARRGEVLRVGAVFASAFLRAVKFLEGH                    WRALCADIRAGRADPAVVTDAACRGAVDAVLAARADPDLADAIAAECGGASWRGIVRR                    LWPRTKYIDVIVTGSMAQYIPLLEFYGGGLPLVSTMYASSESYFGINLRPLDPPEEVV                    YTLLPNMCYYEFIKVEKDGDGEKVRDGEVVDLVGVEVGAYYELVVTTFTGERVCSPFD                    FFPTSCMGLSTPSDRKING</aaseq>|
+
* College of Life Science, Hebei Normal University, Shijiazhuang, Hebei, China 050016 (Y.-C.Z., Y.-F.X.)
DNA = <dnaseqindica>670..1561#509..610#1..416#atgacgtccacgtcgtctgaaaatgcgcccgaccacgaccacgaccacgacgcctcttcgccggcgccggcgacggcgacggcggcggcgctgccaccgatgatcccggcgtgcgacccgcacgacgggccggcgtgcctggagctcatcgaggtgctgaccacgcgcgccgccgccgtccagcggcgcgtcctcgccgaggtcctcgccatgaacaccggcaccgactacctccgccggtttctcggcgacgaggtcgtcgccgccgccggcggcgaggacgagctcgccgcggcgttcaaggagcgcgtgccggtggtggagtacgaggacgtgaagccgtacatcgagcgcatcgccaacggcgccccgtcgtcgctcatctcctccaagcccatcaccgagctcctcacgaggtaagctcaagctcgatcgatctcgatctcgccatggctaacctcacaatttgacacaatcactcggtcgatcatggcgatgtgcgccgcagctccggcacgtcaggcgggcagccgaagctgatgccggcgacggaggaggagctcgaccgcaagaccttcctctacaacctcctcgtccccgtcatgaacaagtgagtctctctcgctggcttcgccatcgatcgccatggatgctgacatggaggtgcaggtacgtggaggggctggacgaggggagggggatgtacctgctgttcgtgaagccggagatcacgacggcgtcggggatggtggcgaggccggtgctgacgagctactacaagagccgccacttccggcggcggccggacagcccgtacacgcggtacacgagccccgacgcggcgatcctctgcccggacagccgccagagcatgtacgcgcagctgctctgcggcctcgcccgccgcggcgaggtgctccgcgtcggcgccgtcttcgcctccgccttcctccgcgccgtcaagttcctcgagggccactggcgcgccctctgcgccgacatccgcgccggccgcgccgacccggccgtcgtcaccgacgccgcctgccgcggcgccgtcgacgccgtcctcgccgcccgcgccgaccccgacctcgccgacgccatcgccgccgagtgtggcggcgcgtcgtggcggggcatcgtgcggcggctgtggccgcggaccaagtacatcgacgtgatcgtgacggggtccatggcgcagtacatcccgctgctggagttctacggcggcgggctgccgctggtgtcgacgatgtacgcgtcgtcggagtcctacttcggcatcaacctccggccgctggacccgccggaggaggtggtgtacacgctgctgcccaacatgtgctactacgagttcatcaaggtggagaaggacggcgacggcgagaaggtccgcgacggcgaggtggtggacctcgtcggcgtcgaggtcggcgcctactacgagctcgtcgtcaccaccttcacaggtgagcgcgtgtgcagcccgttcgatttctttcccacctcctgcatgggtttatcaacgccgtccgatcgcaaaatcaacggctga</dnaseqindica>|
+
==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074537.1 RefSeq:Os11g0528700]|
+
<references>
}}
+
* <ref name="ref1">
[[Category:Genes]]
+
Zhang SW, Li CH, Cao J, Zhang YC, Zhang SQ, Xia YF, Sun DY, Sun Y. Altered
[[Category:Japonica mRNA]]
+
architecture and enhanced drought tolerance in rice via the down-regulation of
[[Category:Oryza Sativa Japonica Group]]
+
indole-3-acetic acid by TLD1/OsGH3.13 activation. Plant Physiol. 2009
[[Category:Japonica Genes]]
+
Dec;151(4):1889-901. doi: 10.1104/pp.109.146803. PubMed PMID: 19776160; PubMed
[[Category:Japonica Chromosome 11]]
+
Central PMCID: PMC2785973.
[[Category:Chromosome 11]]
+
 
 +
</ref>
 +
</references>
 +
 
 +
 
 +
==Structured Information==
 +
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 11]]

Latest revision as of 13:11, 11 December 2016

The rice gene Os11g0528700 was reported as tld1 in 2009[1] by researchers from China.

Annotated Information

Gene Symbol

  • Os11g0528700 <=> TLD1, OsGH3.13

Function

  • TLD1 is a rice GH3.13 gene that encodes indole-3-acetic acid (IAA)-amido synthetase, which is suppressed in aboveground tissues under normal conditions but which is dramatically induced by drought stress.
  • The activation of TLD1 reduced the IAA maxima at the lamina joint, shoot base, and nodes, resulting in subsequent alterations in plant architecture and tissue patterning but enhancing drought tolerance.

Mutation

  • The tld1-D mutant shows an increased number of tillers, enlarged leaf angles, and dwarfism.
  • The decreased level of free IAA in tld1-D due to the conjugation of IAA with amino acids greatly facilitated the accumulation of late-embryogenesis abundant mRNA compared with the wild type.

Expression

  • To understand the native roles of TLD1 in rice physiology and development, The researchers analyzed the TLD1 expression pattern under normal conditions. Although TLD1 was expressed in all of the tissues examined, the level of transcription as determined by RT-PCR was low in the aboveground organs but relatively high in the roots

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Molecular Cell Biology, Hebei Normal University, Shijiazhuang, Hebei, China 050016 (S.-W.Z., C.-H.L., J.C., S.-Q.Z., D.-Y.S., Y.S.);
  • Key Laboratory of Hebei Molecular Cell Biology, Shijiazhuang, Hebei, China 050016 (S.-W.Z., S.-Q.Z., D.-Y.S., Y.S.);
  • College of Life Science, Hebei Normal University, Shijiazhuang, Hebei, China 050016 (Y.-C.Z., Y.-F.X.)

References

  1. Zhang SW, Li CH, Cao J, Zhang YC, Zhang SQ, Xia YF, Sun DY, Sun Y. Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation. Plant Physiol. 2009 Dec;151(4):1889-901. doi: 10.1104/pp.109.146803. PubMed PMID: 19776160; PubMed Central PMCID: PMC2785973.


Structured Information