Difference between revisions of "Os10g0389200"

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(Created page with "{{JaponicaGene| GeneName = Os10g0389200| Description = Similar to Red chlorophyll catabolite reductase [Oryza sativa (japonica cultivar-group)]| Version = NM_001071035.1 GI...")
 
(Annotated Information)
 
(3 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''Os10g0389200''' was reported as ''' OsRCCR1''' in 2011 <ref name="ref1" /> by researchers from the China.
GeneName = Os10g0389200|
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<br>
Description = Similar to Red chlorophyll catabolite reductase [Oryza sativa (japonica cultivar-group)]|
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==Annotated Information==
Version = NM_001071035.1 GI:115481813 GeneID:4348519|
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===Gene Symbol===
Length = 1535 bp|
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*'''Os10g0389200 <=> OsRCCR1'''
Definition = Oryza sativa Japonica Group Os10g0389200, complete gene.|
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<br>
Source = Oryza sativa Japonica Group
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===Function===
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*'''OsRCCR1''' play key roles in senescence and are involved in wound responses.
 +
<br>
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===Expression===
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*Expression analysis by semi-quantitative PCR or quantitative real-time PCR showed that '''OsRCCR1''' transcripts were much more abundant than OsRCCR2, and all of these genes were upregulated during senescence and following wound treatment.  
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<br>
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===Mutant===
 +
*RNA interference knockdown of '''OsPAO''' led to pheophorbide a accumulation in leaves (especially dark-induced senescent leaves) and leaf death from regeneration stage onwards, even transgenic plants inviability after transplantation. While, knockdown of OsRCCR1 resulted in lesionmimic spots generation in older leaves which died off early in the transgenic plants.  
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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==Labs working on this gene==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, PR China
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*Graduate University of the Chinese Academy of Sciences, Beijing 100049, PR China
            clade; Ehrhartoideae; Oryzeae; Oryza.
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<br>
|
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==References==
Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
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<references>
AP = Chromosome 10:13242540..13244074|
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<ref name="ref1">
CDS = 13242540..13243157,13243895..13244074|
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Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice
GCID = <gbrowseImage1>
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</ref>
name=NC_008403:13242540..13244074
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source=RiceChromosome10
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</references>
preset=GeneLocation
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==Structured Information==
</gbrowseImage1>|
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]
GSID = <gbrowseImage2>
 
name=NC_008403:13242540..13244074
 
source=RiceChromosome10
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggtggaggtggcgcaccgggaggtggcgcgggcgctcgcgtccctggcggaggcgcggctgggcgcgcggctgctcccctccgccgtgccgcccgacgtcgccgagttccgcagcggcggcggcgccgggaacgccgtgggctcgctcgacgtgcgccgcggcgcgccgggatcgacgattgatttcatgctccagtcctcactacactgcaaagtcccaaatggcgcaatcgacattacatctcttctcatctttctgaacgcctcgacagatgctccgcatttcctcatggaatttatacaaggtagcccaacttcgatcgtggtgcttctggaccttctcccacggaaagaccttgcgctccatcccgaatacatagagagatactatgagaatactcaggtggacaaacagcgtgagaaggtcgaagaattgccgcaggcccgtccataccgatcgcgatccctcttcgtgcgcagcaccttctcactgacagcaatactgatgagcatcgactgtgggcaaggaggagagggtaccttggaagagatagtgcgtggtcaactagcaacagctgctagggcacttcttcaaatttggcttgatagttgtgctgatcatacttcagagatggaagaaggcgagagagaaaacatgataaagagggaccaaattgtaaggtccaagtcaatcgaggtcgacctgacttcaaatttgccgaggatgtttggtcccgatgtcgcagaccgagtcatagctgaaatccagaaggcctttggggtacaagaggcctag</cdnaseq>|
 
AA = <aaseq>MVEVAHREVARALASLAEARLGARLLPSAVPPDVAEFRSGGGAG                    NAVGSLDVRRGAPGSTIDFMLQSSLHCKVPNGAIDITSLLIFLNASTDAPHFLMEFIQ                    GSPTSIVVLLDLLPRKDLALHPEYIERYYENTQVDKQREKVEELPQARPYRSRSLFVR                    STFSLTAILMSIDCGQGGEGTLEEIVRGQLATAARALLQIWLDSCADHTSEMEEGERE                    NMIKRDQIVRSKSIEVDLTSNLPRMFGPDVADRVIAEIQKAFGVQEA</aaseq>|
 
DNA = <dnaseqindica>918..1535#1..180#atggtggaggtggcgcaccgggaggtggcgcgggcgctcgcgtccctggcggaggcgcggctgggcgcgcggctgctcccctccgccgtgccgcccgacgtcgccgagttccgcagcggcggcggcgccgggaacgccgtgggctcgctcgacgtgcgccgcggcgcgccgggatcgacggtaatggcacccctcctctcacttttgctcgtcagatcgtacagatttacctgttctgtcgattggagaacatcagaatcagtcatatgaattagtgaaatggtagtggtaaactggtaatgtctagagcaccatcagaatcagtcatatgaattaagtagtgaatcatatgaattaactaattaagtagtgaaatggtagtggtaaactggtaaaaacaggctggcacaaacagagcagaatagatcaatggcatgtcaaaagacttggacaatttactgaaactgttttacactgaaaaattgctgccgaactatttgtgatttgccctatcaaggtgaacttgcaaacttttagaagccaagatccataatccaactcttcggagcaaattatgacttttcattatattggcaatgctcaaattagttcatttgcttccaatatcgaaatggaaacaattggtctgttctagagtttgtacctcattcgtgattcttcctatcactcacagattttgtttcctctccaaaaacaaaaaaacaaaatcactccaactgaacggacacaattggagtggccaaaatgatcaacagcattcaaattatgaaactaatctcaccacttgaacacctgaattatgctccctagtgctcagtagcttagcgtggtagaatttcttgagttctgcaaggaatgacaaatggagttaaattattaatttttcttgtctacagattgatttcatgctccagtcctcactacactgcaaagtcccaaatggcgcaatcgacattacatctcttctcatctttctgaacgcctcgacagatgctccgcatttcctcatggaatttatacaaggtagcccaacttcgatcgtggtgcttctggaccttctcccacggaaagaccttgcgctccatcccgaatacatagagagatactatgagaatactcaggtggacaaacagcgtgagaaggtcgaagaattgccgcaggcccgtccataccgatcgcgatccctcttcgtgcgcagcaccttctcactgacagcaatactgatgagcatcgactgtgggcaaggaggagagggtaccttggaagagatagtgcgtggtcaactagcaacagctgctagggcacttcttcaaatttggcttgatagttgtgctgatcatacttcagagatggaagaaggcgagagagaaaacatgataaagagggaccaaattgtaaggtccaagtcaatcgaggtcgacctgacttcaaatttgccgaggatgtttggtcccgatgtcgcagaccgagtcatagctgaaatccagaaggcctttggggtacaagaggcctag</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071035.1 RefSeq:Os10g0389200]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 10]]
 
[[Category:Chromosome 10]]
 

Latest revision as of 13:24, 11 December 2016

The rice Os10g0389200 was reported as OsRCCR1 in 2011 [1] by researchers from the China.

Annotated Information

Gene Symbol

  • Os10g0389200 <=> OsRCCR1


Function

  • OsRCCR1 play key roles in senescence and are involved in wound responses.


Expression

  • Expression analysis by semi-quantitative PCR or quantitative real-time PCR showed that OsRCCR1 transcripts were much more abundant than OsRCCR2, and all of these genes were upregulated during senescence and following wound treatment.


Mutant

  • RNA interference knockdown of OsPAO led to pheophorbide a accumulation in leaves (especially dark-induced senescent leaves) and leaf death from regeneration stage onwards, even transgenic plants inviability after transplantation. While, knockdown of OsRCCR1 resulted in lesionmimic spots generation in older leaves which died off early in the transgenic plants.


Labs working on this gene

  • Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, PR China
  • Graduate University of the Chinese Academy of Sciences, Beijing 100049, PR China


References

  1. Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice

Structured Information