Difference between revisions of "Os10g0485600"

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Please input one-sentence summary here.
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The rice '''Os10g0485600''' was reported as ''' OsDCL3b''' in 2012 <ref name="ref1" /> by researchers from the China.  
 
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<br>
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''Os10g0485600 <=> OsDCL3b'''
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<br>
 
===Function===
 
===Function===
Please input function information here.
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*Significant roles of OsDCL4, '''OsDCL3b''' and OsDCL1 in the 21- and 24-nucleotide phased small RNA biogenesis pathway in rice.
 
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<br>
===Expression===
 
Please input expression information here.
 
 
 
===Evolution===
 
Please input evolution information here.
 
 
 
You can also add sub-section(s) at will.
 
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China,
 
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*Graduate University of the Chinese Academy of Sciences, Yuquan Road, Beijing 100039, China,
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*Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19711, USA,
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*Delaware Biotechnology Institute, Newark, DE 19711, USA,
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*Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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<br>
 
==References==
 
==References==
Please input cited references here.
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<references>
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<ref name="ref1">
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Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
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</ref>
  
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</references>
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<br>
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]
GeneName = Os10g0485600|
 
Description = DEAD/DEAH box helicase, N-terminal domain containing protein|
 
Version = NM_001071433.2 GI:297610683 GeneID:4348944|
 
Length = 12266 bp|
 
Definition = Oryza sativa Japonica Group Os10g0485600, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
 
AP = Chromosome 10:18817685..18829950|
 
CDS = 18817685..18817813,18817890..18818066,18818164..18818277,18818768..18818902,18820041..18820172<br>,18820301..18820453,18820956..18821091,18821720..18821825,18821920..18822112<br>,18822185..18822345,18822609..18822824,18823114..18823379,18823887..18824161<br>,18824253..18824709,18826355..18826437,18826642..18826851,18827279..18827755<br>,18827844..18828125,18828292..18828618,18828800..18828889,18829170..18829281<br>,18829386..18829486,18829906..18829950|
 
GCID = <gbrowseImage1>
 
name=NC_008403:18817685..18829950
 
source=RiceChromosome10
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008403:18817685..18829950
 
source=RiceChromosome10
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggccgacgacgaggctgccgtcctcccgcccccgcctccgctgccgccgccttgccgcccccacaggcagctccgcccgagggggtctcgaccgactgctgataccacccctcgcactagccagttggtggaggtgttcgaggcggcgctgcgggggaacaccatcgcggtgctcgacacggggtccgggaagaccatggtcgccgtcatgctcgcgcgcgagcacgcacgccgggtgcgcgccggggaggcgccgcggcggatcgtggtgttcctcgcgcccaccgtgcacctcgtccatcagcaattcgaggtgattcgtgagtacactgacctcgacgtgatgatgtgctctggagcatcgcgggttggcgaatggggcgccgatcattggaaggaggaagttgggagaaatgagatcgttgttatgacgccacagatactgttggatgctctgcggcatgcttttctgacaatgagtgcagtgagcttgctaatatttgatgaatgtcatcgtgcttgtggaagccatccatatgcacgaataatgaagatatacatcgtagaagatcgaaatgagcttgagagcttttcccctcctacaacaattgtgaacaaatactatgatgcttacatggttgattttgataatctgaaatcaaagcttcagatattttctgatgagtttgattctttgttggttggtcttcaagaatcgccatctaataaatttaaagacaccgataatatcctagagacttcaagaaagagcttgtccagataccatgggaaaatattgtacagcctaaacgatcttggtccaattatcacctctgaggtagtcaaaatacatattgaaagcgttaagccattatgtgattctgaagactgcattttttctaaagctagcttgtgcttacatatgtcttattttaaagaagctttaagtctaatagaggaaattcttccacaaggatatggtgaactaatgaaatcagaatctggttctgaggaattaactaaaaggggatacatttcttcaaaagtgaatacgctaatcaacatcttcaaatcgtttgggtcatcaaatgaagtgctttgcctaattttcgtagacagaattataacagctaaagccgtcgaaaggtttatgagaggaattgttaacttctcttgtttttcaatttcttacttgactggagggagtacatcaaaagatgctctgagtccagcagttcagagatttactttggatttgttccgagctggaaaggtgaacttgctttttacaacagatgtgactgaagagggcgtcgatgtacctaactgttcttgtgtgatacgcttcgacctacccagaactgtttgtagctatgtccaatctcgtggtcgtgctagaaggaacaactcggaatttattcttatgattgagaggggaaacttgcagcagcaagaacacatatttcgtatgatacagactggttactatgttaaaaactgtgcactctatagacaccccaatgctttatcctatgacttgtctatccaagggatgtacacctaccaagttcagtcaactggagcaactataaccgcagattgctgtgtcaacctaattcgtaaatactgtgagaagcttcctaaagataggtatttcatgccaaagccttcctttgaggtgaccattgaagatggattattcaaatgcacattgacgctacctcgaaatgcagcatttcaaagtatagttggccctttaagcagttcaagtaatttatccaagcagcttgtatccctagaggcctgcaagaaattgcatcaactgggagaacttaatgatcatcttgtacctttgactgaagaacctatggatacagatttcactacagcagatgaaaaatgcatatctggaccaggaacaactaaaaggaaggagcttcatggtactacatgtgttcttgctttatcaggaacttggattcatgacagtgaaaatattacactgaatacttacagaattgattttctttgtgaccaagagggtgaaaactatgctgggtttgttctcttaatggaaccagaacttgatgatgatgtggcaccctcaaaaatggatctgttcctgatccctaataaaatggtctacaccactgtaactcctcgcggaaaagttcaactaaacaaaaagcagttaggtaaagggaaattgttccaagaattctttttcaatggaatctttggtagattatttcatggttctcgaaaaagtggagcacaaagggattttattttcaaaaagggtcatgaaatacagtggaacacggaaagcatgtacttgcttttacctttgagggattcttcatatatccaggatgacctaagcatacactgggaagcaattgaatcttgtgctggtgcagttgagcagttgtggagttcgtatcaaggagatgaaaatgtcattcctgtaaattgtattccacaaaaaagaagagggggccaagaagaaattattcatctggccaataagtctcttcattgttccagcatcaaagattcagtcgtgctatcactgcatacaggaaggatatacactgttcttgatttgatcttagacacaactgcagaggactcgtttgatgagatgtatggctccactggcaaacctctgctcatggaaaaagaacaaattcatgctcgggttccacctgaactacttatccatctcgatattttggaagctataacaactttaagatgctgtgagacattttctctggagcgtttagagctgttaggagactccgtgctaaagtatgtggtaggatgtgaccttttcctaaggtatcctatgaaacatgaaggtcagctctctgatatgagatccaaggctgtctgcaatgctacacttcataaacatggaatatggcggtcgttgcagggttatgtacgtgataatgcttttgacccacggcgttgggttgctcctggacagatatcgttgcgcccttttccttgtaactgtggaatcgagactgcatttgttccttctcatagaaggtatatccgagatgacccatctttttttgtgggaaaaccatgtgacagaggtcataggtggatgtgctcaaaaacaatatctgattgtgttgaagcactggttggagcatattatgttggtggtggcattgctgctgcactttgggttatgaggtggtttggaatcgatatcaaatgtgatatgaagctattgcaggaagtgaagttcaatgcatctcatttatgctccttatcaaaaataaatgacattgaggaactggaagcaaaactgaagtacaacttctcagtcaagggccttcttttggaagccataactcatccatctctgcaggaattaggtgttgattactgttaccagcgtcttgaatttcttggtgattctgtgctggatctacttcttacacgtcatctctatgctactcatactgatgttgatcctggagaattaacggatttacgctccgctttggttagtaatgagaattttgcacaagcagttgtaagaaacaacattcacagtcatctacaacatggatccggaatacttttggagcaaattactgaatatgtcaggtcaaatttggagtgtcaagggaaagagagtgaattccttcaacatactacatgtaaagtacctaaggttcttggtgacattatggaaagcatcgctggtgcagtatttatagacaccgattttaatgttgacatggtttgggagattttcgagccattgctttctccactgattacacctgataagcttgcattgccaccttaccgtgagttgctggagctatgcagtcacattggttgcttcttaaattcaaaatgcaccagtaaaggagaagaagtaattatagagatgtcactgcaactacgagatgagctgctggtagcacaagggcatgacagaaacaaaaagagggcaaaggcaaaagcagcatctcgtattttggcagatcttaagcagcaacagggtctttcaattaaacaatgtttgtccaaggctaaacagctggatatcgtgacttcagatcttcagtttgacttgacaagtttgtgcttccactcaaaatggagaaaggtggacctcgaagtgcgcttttcaagctatgcaagattttgcagtggccaatgccagaattcgaatttgtggaacaaaggttcaggactcctattgttatggatggggcgacaacaacaaacttcaatagctttgtttcgacaatcaccttgcacatacctgacgcaacaaccattacatttcaagtgtttggagagattaaagatacgtcttagagaaagcacttggtag</cdnaseq>|
 
AA = <aaseq>MADDEAAVLPPPPPLPPPCRPHRQLRPRGSRPTADTTPRTSQLV                    EVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVHLVHQ                    QFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTPQILLDALRHAFLTM                    SAVSLLIFDECHRACGSHPYARIMKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDN                    LKSKLQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPI                    ITSEVVKIHIESVKPLCDSEDCIFSKASLCLHMSYFKEALSLIEEILPQGYGELMKSE                    SGSEELTKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFS                    CFSISYLTGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRF                    DLPRTVCSYVQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPN                    ALSYDLSIQGMYTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDG                    LFKCTLTLPRNAAFQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPM                    DTDFTTADEKCISGPGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEG                    ENYAGFVLLMEPELDDDVAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQE                    FFFNGIFGRLFHGSRKSGAQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIHW                    EAIESCAGAVEQLWSSYQGDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVV                    LSLHTGRIYTVLDLILDTTAEDSFDEMYGSTGKPLLMEKEQIHARVPPELLIHLDILE                    AITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLH                    KHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSFF                    VGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGIDIKCDMKLLQEV                    KFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLG                    DSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILL                    EQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIF                    EPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDELLVA                    QGHDRNKKRAKAKAASRILADLKQQQGLSIKQCLSKAKQLDIVTSDLQFDLTSLCFHS                    KWRKVDLEVRFSSYARFCSGQCQNSNLWNKGSGLLLLWMGRQQQTSIALFRQSPCTYL                    TQQPLHFKCLERLKIRLRESTW</aaseq>|
 
DNA = <dnaseqindica>1..129#206..382#480..593#1084..1218#2357..2488#2617..2769#3272..3407#4036..4141#4236..4428#4501..4661#4925..5140#5430..5695#6203..6477#6569..7025#8671..8753#8958..9167#9595..10071#10160..10441#10608..10934#11116..11205#11486..11597#11702..11802#12222..12266#atggccgacgacgaggctgccgtcctcccgcccccgcctccgctgccgccgccttgccgcccccacaggcagctccgcccgagggggtctcgaccgactgctgataccacccctcgcactagccagttggtcagtgcagcttagctgatgttggctgctctcctcgttggcgccgcctgcgtgcgtgcgtgcgtgcaggtaccaggtggaggtgttcgaggcggcgctgcgggggaacaccatcgcggtgctcgacacggggtccgggaagaccatggtcgccgtcatgctcgcgcgcgagcacgcacgccgggtgcgcgccggggaggcgccgcggcggatcgtggtgttcctcgcgcccaccgtgcacctcgtccatcaggttgctttttctttttttttttcatcaacatgtgaacaaatggagtgtggacgatgtgttctgatcgggagctggttgctctgcatttgtgctgtagcaattcgaggtgattcgtgagtacactgacctcgacgtgatgatgtgctctggagcatcgcgggttggcgaatggggcgccgatcattggaaggaggaagttgggagaaatgaggtaagcgcccgggtttactgaacctgctcctgcgctatgcttgaggcagcgatttgcttgattgcgatgtactgtgaattggcacatttggcgtgcccaccaactgaagccagatgcaggctgaggttgctaccagcctacccattaataaatttgagagtcatcaacttgatgttttctgaaggggcgtgcatatgaaatactagctgatttagcactctggttcaagatgaattttctttcatgtgttgtcatttcctagattgagatgctggtctgaatctgagggatattgcagtcctacgccactttgttcaaagtagctgaagttctgtaactttggggttcaatttcttagatccttgctatgttagtacctatcggacttaattacagctactgaattgggcttacgcatgccattgctaacttggatcggaaatacgtgtttacgctgacatttgagcgatgcatgccttttgtgtttcagatcgttgttatgacgccacagatactgttggatgctctgcggcatgcttttctgacaatgagtgcagtgagcttgctaatatttgatgaatgtcatcgtgcttgtggaagccatccatatgcacgaataatgaaggtaatagaaatttggggatctgtcttttgctttgacaacattggtagataagctttggcttgcagtttttgttattacagaaagttgcttaggataacagtatttgttttaataatctgacatggcaaatttgcttttgttttatgtctctcttgagttccaaaggaattttattttgggtctcagtggaggccagatgtatttggaatgacagcctcccccgttgctactaaaggcaagaattctacacacgacaatcatgtgcttttttgtaacgaaaatagtcacgtgcttttaaccctgtgtatatttcattgatcaatagtttcagaaaatgtgttttagctttgttattaaaataagcatgtcgtgtgactgttattatcttcctttttgaagaatgccccaactgccatgtactgtcaaaaactcatgtgatgtatttgagtgcttttgccttcttcataacaagacaatacatttctggaagtatgattctttctcttgcttcataattctacatggaatacctctctgcctgccaactgtagattgcatcctatttcaaattttgatgattgggcatcacagtttgcgtgtttgacttagttgtccactaaaaggcgagttccttagagggtcgcttaccctggttgggtaaggttaggtcgtgtgagccttttgttttgtaagtagttttttcgtaggtgtttttggggagaaaggcattctagtctcttccccgtttttattccttcttaatgaaatgatacacatactcatgtatatttttttaaagaaaaggttgtcccaatttaatctattcaatgcttctactcatattactggagagcacattcaatcagttcattaaattgaaacagtttcctgttgtagaataatttcattgaaattatgaatttctaatattgttcggatttgctggctcataatctattacaaccctccattttttcaggtgcttccacactacacaattgtgaagcacacatttctcaactagaactaaccttggatgccaaggttatctcaagctgacaagctttggatttattgaattttaagaaaacaactttccagtaacaaatagcctgtcatatgttacatgctattgcagatatacatcgtagaagatcgaaatgagcttgagagcttttcccctcctacaacaattgtgaacaaatactatgatgcttacatggttgattttgataatctgaaatcaaagcttcagatattttctgatgaggtgatttaactgaaatacatttgagcttattattaaaatacatatataatttggagtaccaaaacctacagctccctgtaactttctttttgcatgtatatttgtttaaattttgtactgttgggcagtttgattctttgttggttggtcttcaagaatcgccatctaataaatttaaagacaccgataatatcctagagacttcaagaaagagcttgtccagataccatgggaaaatattgtacagcctaaacgatcttggtccaattatcacctctgaggtattgcattatccaatcagtattatataatcagttctatgtaaagaaaacttttctgaagagtcacataactttgacatttcatatcggccttgtttgtttactagttatacctacataaattccagtcttattgaaatgatttttaacctttttgcaaatatataaaatattgcgcatgccgaactgataaatcaaaagaatatttggtgaattcttttcataggaaccattcactttaactagtaaagattggcacaagttcaagtacctaagaacataagctgctttgcatgaccttgcctgtgacagctatagtatctttgccattatttttccgtaacatcacgtgtgctgcaactgtttgtcttctgttatgaaagagtgctttgttcttttctggaagtggaaacggtgtattggtactaaaaaacctgttatccataaggacttcaagtatagtgtaaaatgcttatactaacttaaattgttttcttaacaggtagtcaaaatacatattgaaagcgttaagccattatgtgattctgaagactgcattttttctaaagctagcttgtgcttacatatgtcttattttaaagaagctttaagtctaatagaggaaattcttccacaaggtatagtgcaccctttagttgttatcttgaattaactgcataagcaaaaatgatgcagtgagtatctttcttttatctgtatggattaggtaatgacacaatttgcaaatccaactaggattgcattatgttctttctgtttagcttatgccctccagtaaaagattccctgaatcttattagtttagttgtctgttttttgtacgttattctcagaataagaagagaaacacatgcttctacacaccctcctaatttgcatgctctatagaagtgaactatgaagttgatgtagttcgctgggtgctgctagctaatttgtggagttggctgctagctgagagggctatcacctttgacgttaatctttgccccttatgataagatctggtcagcgggcttctgccggtttggcaaaaaagaagtgagctttgaagcagtttccagtaggtagttagaagcactcaaccaaaaagacagaggagattgactctaacctctatagccacttagattgcagttggtagtctctgtgccacagctattgtttctctgtatgtgttcctttttctactttcgtgcattgatagttgccttctctaattctgctgatgcaattgcatgacaggatatggtgaactaatgaaatcagaatctggttctgaggaattaactaaaaggggatacatttcttcaaaagtgaatacgctaatcaacatcttcaaatcgtttgggtaataccctagtattctactcaagatgtttagtttcacctacttttggtcttttgttggccaaaaataatacagccatgtgttttctctacaggtcatcaaatgaagtgctttgcctaattttcgtagacagaattataacagctaaagccgtcgaaaggtttatgagaggaattgttaacttctcttgtttttcaatttcttacttgactggagggagtacatcaaaagatgctctgagtccagcagttcagagatttactttggatttgttccgagctggaaaggtatgagatgctattgtaaatttgattcaaacagtctttcaaatgttacattaacttcacatcaatttctaggtgaacttgctttttacaacagatgtgactgaagagggcgtcgatgtacctaactgttcttgtgtgatacgcttcgacctacccagaactgtttgtagctatgtccaatctcgtggtcgtgctagaaggaacaactcggaatttattcttatgattgagaggtgaatcatcacacttgaaattaagttaccctgtgacagagatagtcaattttttctaacctaaatt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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071433.2 RefSeq:Os10g0485600]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 10]]
 
[[Category:Chromosome 10]]
 

Latest revision as of 05:32, 12 December 2016

The rice Os10g0485600 was reported as OsDCL3b in 2012 [1] by researchers from the China.

Annotated Information

Gene Symbol

  • Os10g0485600 <=> OsDCL3b


Function

  • Significant roles of OsDCL4, OsDCL3b and OsDCL1 in the 21- and 24-nucleotide phased small RNA biogenesis pathway in rice.


Labs working on this gene

  • State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China,
  • Graduate University of the Chinese Academy of Sciences, Yuquan Road, Beijing 100039, China,
  • Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19711, USA,
  • Delaware Biotechnology Institute, Newark, DE 19711, USA,
  • Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China


References

  1. Roles of DCL4 and DCL3b in rice phased small RNA biogenesis


Structured Information