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| − | {{JaponicaGene|
| + | The rice '''Os02g0568200''' was reported as ''' cpt1''' in 2005 <ref name="ref1" /> by researchers from the Japan. |
| − | GeneName = Os02g0568200|
| + | <br> |
| − | Description = NPH3 domain containing protein|
| + | ==Annotated Information== |
| − | Version = NM_001053716.2 GI:297599452 GeneID:4329720|
| + | ===Gene Symbol=== |
| − | Length = 5108 bp|
| + | *'''Os02g0568200 <=> cpt1''' |
| − | Definition = Oryza sativa Japonica Group Os02g0568200, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *The '''CPT1'''-dependent major phototropism of coleoptiles is achieved by lateral auxin translocation and subsequent growth redistribution. |
| | + | <br> |
| | + | ===Expression=== |
| | + | *The researchers isolated a mutant, named coleoptile phototropism1 (cpt1), from g-ray–mutagenized japonica-type rice (Oryza sativa). This mutant showed no coleoptile phototropism and severely reduced root phototropism after continuous stimulation. A map-based cloning strategy and transgenic complementation test were applied to demonstrate that a NPH3-like gene deleted in the mutant corresponds to '''CPT1'''. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *Botanical Gardens, Graduate School of Science, Osaka City University, Kisaichi, Katano-shi, Osaka 576-0004, Japan |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Department of Plant Physiology, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602, Japan |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *Institut fu ¨ r Biologie III, Albert Ludwigs-Universita ¨ t, D-79104 Freiburg, Germany |
| − | |
| + | <br> |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | ==References== |
| − | AP = Chromosome 2:22466026..22471133|
| + | <references> |
| − | CDS = 22466201..22466821,22466892..22467682,22469402..22470080,22470361..22470430,22470531..22470658<br>|
| + | <ref name="ref1"> |
| − | GCID = <gbrowseImage1>
| + | The Rice COLEOPTILE PHOTOTROPISM1 Gene Encoding an Ortholog of Arabidopsis NPH3 Is Required for Phototropism of Coleoptiles and Lateral Translocation of Auxin |
| − | name=NC_008395:22466026..22471133
| + | </ref> |
| − | source=RiceChromosome02
| + | |
| − | preset=GeneLocation
| + | </references> |
| − | </gbrowseImage1>| | + | <br> |
| − | GSID = <gbrowseImage2>
| + | ==Structured Information== |
| − | name=NC_008395:22466026..22471133 | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | source=RiceChromosome02
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atgtgggagtcggagagcgagagccacggcggcgagcgggggctcgtccccgtcggcggcggcggcggctcaggccggcacgaggcggcgctcaagaacgacggcttcgtccgcagagaccggtcttggtatgtcaacagtgacatccccagcgatctgctcgtcaaagtgggagacgtgaacttctaccttcacaagtatccgatgatctcccggagcgggcggatgagccgcgccgtgtacgagtcgtcggcggcagatgaggcggaggcggacgcggcggcggcggtggcggtggtggagatgggcgacctgccgggtggcgcggggtcgttcgagctggcggcgcggttcagctacgggatggcggtggacctgacggcggcgaacatctccgggcttcgctgcgccgccgagtacctggagatgacggaggagatggaggaagggaacctcatcttcaagacggaggcgttcctcagctacgtggtgctgtcgtcgtggcgcgactccatcgccgtgctcaagagctgcgaggcgctctcgccgtgggcggagaacctgcagatcgtgcggcggtgcagcgagtccatcgcctggaaggcgtgcgccaacccgcgcggcgtgcgctgggcgtacaccggcgccggcgccggcagcggaggagcgcgcgggggcccggcggcgatcaggggaggtggcggctctggcggcacggcgagcccgcggtggaacgtcggtggcggcggagggggggagtcgaaggagtcgagcccgagcaggcaggcggtgccgccggcggactggtggttcgaggacgtgtccgtgctcaggatcgaccacttcgtgcgcgtcgtcaccgccatcaaggtcaaaggcatgcggttcgacctgatcggcgcggcgatcacccactacgcgtcgaaatggctccccggcctcaccaaggacgccccgctcggcgccacccacgacgagccgtgggcgcaggcctccgccgccggcgtcggcggcggcggcctccacatgatgatcatctccggcgccggcggcggcaaggacgacgtcctcgccgcctgcagcgcgccgtcgcgcgagcagcgcatggtggtggagagcatcatcagcatcaccccgccgcagcgggacagcgtctcctgcggcttcctcctccgcctcctccgcctcgccatcatgctcagggccgccccggcgctggtcaccgagctcgagaagcgcgtcgggatgcagctcgagcaggcggcgctcgccgacctcctcatcccctcctacggcggccgcgccgccgacaccgcctacgacgtcgacctcgtgcagcgcctcgtcgagcacttcctggttcaggagcagacggagatggcggtggcgtccagccccggccgcggcgaccctccgccgccgccgcagccggagtactacagcgggaggatgccgccgtcgtccgcggccgcggcgtcggcgtcggcgtcgacgggcgggctgaacgccaaggcgcgcgtcgcccggctgctcgacagctacctctccgaggtctcccgcgaccgcaacctctccctcaccaagttccaggtcctcgccgagtcgctgccggagtcggcgcgcgcctgcgacgacggcctgtaccgcgccgtcgactcctacctcaaggcgcacccgacgctgacggagcacgagaggaagaggctgtgcagggtgatggactgccagaagctgtcgttcgacgcgtgcatgcacgcggcgcagaacgagaggctgccgctgcgggtggtggtgcaggtgctcttcaccgagcaggtcaagatcagcaacgcgctggcgagctcctccgcggcgctcaggtcgtcgtcttcggcgccgggggcggacgccgcgccggcgatgccgacgacgcggcggcagctgctggacgggacgccgcagtcgttccaggaggggtgggcggcggcgaagaaggacatcaacacgctcaagttcgagctggagagcatgaaggccaagtacctggagctccagcacgagatggacgcgctccagaaacaggtggacggccgcggcggcggcgcgccgtcgccggcggccgccaagatcggcaagcagcagcagcagggcacgtcggcgtcggcgtggagcagcgggtggaagaagctgggcaggctggccaagatgtccggcgccgacgcggcggccggtggtggcgtggcgccgcccggcggcggcgaggccgcggcgaggaagggcccgagaaggtggaggaactccatctcgtaa</cdnaseq>|
| |
| − | AA = <aaseq>MWESESESHGGERGLVPVGGGGGSGRHEAALKNDGFVRRDRSWY VNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEM GDLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFL SYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGA GSGGARGGPAAIRGGGGSGGTASPRWNVGGGGGGESKESSPSRQAVPPADWWFEDVSV LRIDHFVRVVTAIKVKGMRFDLIGAAITHYASKWLPGLTKDAPLGATHDEPWAQASAA GVGGGGLHMMIISGAGGGKDDVLAACSAPSREQRMVVESIISITPPQRDSVSCGFLLR LLRLAIMLRAAPALVTELEKRVGMQLEQAALADLLIPSYGGRAADTAYDVDLVQRLVE HFLVQEQTEMAVASSPGRGDPPPPPQPEYYSGRMPPSSAAAASASASTGGLNAKARVA RLLDSYLSEVSRDRNLSLTKFQVLAESLPESARACDDGLYRAVDSYLKAHPTLTEHER KRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSS APGADAAPAMPTTRRQLLDGTPQSFQEGWAAAKKDINTLKFELESMKAKYLELQHEMD ALQKQVDGRGGGAPSPAAAKIGKQQQQGTSASAWSSGWKKLGRLAKMSGADAAAGGGV APPGGGEAAARKGPRRWRNSIS</aaseq>|
| |
| − | DNA = <dnaseqindica>4313..4933#3452..4242#1054..1732#704..773#476..603#gtgctatatcttgcagtgcatagccagtactgtcactcagcctgcagtttattgtataactgtgcagttccgaaacaaacaagccaacagcccatgtggtcgtctccttcccataacctcatcgatcacaaggaccaatggatattcccccctttcatatcatttatcatatgcccttcaattcccgagctctctcactaaccagctactactagtttcccaccaatcagtgctcactgctcacctcagtcagtcagtagttcagtacaggcagcagcatcagcagcagcttcttcttcttcttcgattgggttcttgatcgtcgtcgtcgtcgatctgtgcctgtatgtacaagctcgcttgtttcatgattcatggtgttgatttattcatggcgacctatggcgtatctgcaggaggagaaggacgagaagtacgtggaaattaagtgaaggtctcagagacggcgagaagtatgtgggagtcggagagcgagagccacggcggcgagcgggggctcgtccccgtcggcggcggcggcggctcaggccggcacgaggcggcgctcaagaacgacggcttcgtccgcagagaccggtcttggtacgtacttaattagtaacactaattactagtggttaattaattaagctgaatctcgcgttcgtacatgttccaaatttgttgcttcgtttttgagcaggtatgtcaacagtgacatccccagcgatctgctcgtcaaagtgggagacgtgaacttctaccttcacaaggtatacaagttgggtcgcaaataaaatcctgagagtttcttgattggtactcatgctgcaactagctagtaattatcttaaacatactagttttggttaataatgaataatgaattaataattaataatgaatcaaatgataaaaaaagaattaacaattacttaaagcttttaataaaacgaacggtcaaatattttttaaaaagttaatcgcgtcaaatatttagacactgagagagtactaattagcttgttaatttggttgatcacgatggatcagtatccgatgatctcccggagcgggcggatgagccgcgccgtgtacgagtcgtcggcggcagatgaggcggaggcggacgcggcggcggcggtggcggtggtggagatgggcgacctgccgggtggcgcggggtcgttcgagctggcggcgcggttcagctacgggatggcggtggacctgacggcggcgaacatctccgggcttcgctgcgccgccgagtacctggagatgacggaggagatggaggaagggaacctcatcttcaagacggaggcgttcctcagctacgtggtgctgtcgtcgtggcgcgactccatcgccgtgctcaagagctgcgaggcgctctcgccgtgggcggagaacctgcagatcgtgcggcggtgcagcgagtccatcgcctggaaggcgtgcgccaacccgcgcggcgtgcgctgggcgtacaccggcgccggcgccggcagcggaggagcgcgcgggggcccggcggcgatcaggggaggtggcggctctggcggcacggcgagcccgcggtggaacgtcggtggcggcggagggggggagtcgaaggagtcgagcccgagcaggcaggcggtgccgccggcggactggtggttcgaggacgtgtccgtgctcaggatcgaccacttcgtgcgcgtcgtcaccgccatcaaggtcaaaggtaattaacacaacacgattacaaacaatgtttatgctttttttgagcctgcatttctctacaatttcagccagtgggatttccgaaaattttcaaaacgaacttcttgaattttgaaatgatttccactgaatttgaacctaaaattttctggaaataaaatgttttgtaaattttggtgaggattttttatacccaaacttgagtggattcaagacgatctgtcttcttaccggagttctattctggacgtacatatctagagatttttgctaaatctaaatcagtttacgacaaacttcaattaattgaaaaaaatcaagtgatctaaaattttatctggttcaaaaaattgtcaagggtatcgaagattgcaaaatttcttgagataccttcaaattattagcatgcttctgcttcttcgacctccacttaattgatgcggctctcgcaaggacgtggcttcgaacaataccgagcctttttagttgataaatcatgtgtaatcgatggatcgacggataagatatgataccgcggtaccgtctccttatagcaatggcttctctttttgctatctctcaattgccgtcagatataaagaggtaaattaatgggggtgaggcttctctaacgtacgtcagagggatatgcttcaataacttgtgggcctatgacggtggcggtgcacctattatgggtacatgtccctctgactttacgttaaagaagccatatccagattactggtaggggccaaccttgtccactccagctaacacatcattttgagtgggcaaaagatcaagtatatatataattttgggtaactacatggcaaatcatatattttccattatatataccatacaacatgattaatttgtcttgcactaaaagattctccggtagggaaaatagaatttgatggcaactcaaactatatctacaagtgttcttgaatagtgaaacagtgaggcatcatatgatttgcttaagcagcaatctaaggggttcccacaaagttcctttatagccttccccatcaaaattaatcctgatgcaatttatccctaccaaaataaattggattaattaggattcgacaagcatccttgcaagcacaggccccatgaaagctcaggataaatatgtgaacctcactaaatttcaaatttcgattggaagtatacaagtgagcatttctgctattagaggatgcaaaaacatctactactaaaagaacatttctacgggcacctaaaatggcctttgcacgggcagaaactgcctatggaaatgtagggtgtatttggttaccggtgacactttactacaactaagaaggtagtgacagccacaataaattgctagccacaaaatatagcaaagttgacaaaaaaaattgagcatatgacgtgtagaacatactattaaaaaaaatgtgtcaaaccataacatgaacctaataaactatggctgtcaaaagtgtggctatgaagtaaatagaccattagtttgaaaatatggtgtatccacgataaaactataatggctacagttaattattttgaaaaaaaaaactgcacaagataagtgcatgctaacaattgtaaaagatttaccccagacattaacaaatttgcacggtgcatatacagtagctgaactgtttcaagaattccatcaactaaaaacgtaagtttttttttttgacaggcatgcggttcgacctgatcggcgcggcgatcacccactacgcgtcgaaatggctccccggcctcaccaaggacgccccgctcggcgccacccacgacgagccgtgggcgcaggcctccgccgccggcgtcggcggcggcggcctccacatgatgatcatctccggcgccggcggcggcaaggacgacgtcctcgccgcctgcagcgcgccgtcgcgcgagcagcgcatggtggtggagagcatcatcagcatcaccccgccgcagcgggacagcgtctcctgcggcttcctcctccgcctcctccgcctcgccatcatgctcagggccgccccggcgctggtcaccgagctcgagaagcgcgtcgggatgcagctcgagcaggcggcgctcgccgacctcctcatcccctcctacggcggccgcgccgccgacaccgcctacgacgtcgacctcgtgcagcgcctcgtcgagcacttcctggttcaggagcagacggagatggcggtggcgtccagccccggccgcggcgaccctccgccgccgccgcagccggagtactacagcgggaggatgccgccgtcgtccgcggccgcggcgtcggcgtcggcgtcgacgggcgggctgaacgccaaggcgcgcgtcgcccggctgctcgacagctacctctccgaggtctcccgcgaccgcaacctctccctcaccaagttccaggtcctcgccgagtcgctgccggagtcggcgcgcgcctgcgacgacggcctgtaccgcgccgtcgactcctacctcaaggtaactagcacattacagctagctagtttccggtgatcgccggagttaatggcgatcgatcgatttgcaggcgcacccgacgctgacggagcacgagaggaagaggctgtgcagggtgatggactgccagaagctgtcgttcgacgcgtgcatgcacgcggcgcagaacgagaggctgccgctgcgggtggtggtgcaggtgctcttcaccgagcaggtcaagatcagcaacgcgctggcgagctcctccgcggcgctcaggtcgtcgtcttcggcgccgggggcggacgccgcgccggcgatgccgacgacgcggcggcagctgctggacgggacgccgcagtcgttccaggaggggtgggcggcggcgaagaaggacatcaacacgctcaagttcgagctggagagcatgaaggccaagtacctggagctccagcacgagatggacgcgctccagaaacaggtggacggccgcggcggcggcgcgccgtcgccggcggccgccaagatcggcaagcagcagcagcagggcacgtcggcgtcggcgtggagcagcgggtggaagaagctgggcaggctggccaagatgtccggcgccgacgcggcggccggtggtggcgtggcgccgcccggcggcggcgaggccgcggcgaggaagggcccgagaaggtggaggaactccatctcgtaaatggagtagctgcctagctagatgctgtatggttgattggtttcaactttcaagtaatttcatgggtcttttgtattttgagagagtccattttgctcagtttgatgtagtgatgttcatggcgttttcagacagaattaatccattttatgcagagtctgaggactactcaagc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053716.2 RefSeq:Os02g0568200]|
| |
| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 2]]
| |
| − | [[Category:Chromosome 2]]
| |
