|
|
| (3 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice gene Os08g0442700 was reported as '''''coe1''''' in 2010<ref name="ref1" /> by researchers from Japan. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os08g0442700 <=> COE1，OSCOE1 |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''COE1''''' encodes a leucine-rich repeat receptor-like kinase, whose amino acid sequence is similar to that of brassinosteroid-insensitive 1-associated receptor kinase 1 (BAK1), and which is localized at the plasma membrane. |
| − | | + | * Auxin and brassinosteroids regulate CV intervals in opposite directions, and '''''COE1''''' may regulate CV intervals downstream of auxin and brassinosteroid signals. |
| − | ===Expression=== | + | ===Mutation=== |
| − | Please input expression information here.
| + | * The '''''coe1''''' mutants had short commissural vein (CV) intervals and produced clustered CVs. |
| | + | * Application of 1-N-naphthylphthalamic acid and brefeldin A decreased CV intervals, and application of 1-naphthaleneacetic acid increased CV intervals in wild-type rice; however, coe1 mutants were insensitive to these chemicals. |
| | + | * Brassinolide, an active brassinosteroid, decreased the CV intervals of wild-type rice, and brassinazole, an inhibitor of brassinosteroid biosynthesis, increased the CV intervals of wild-type rice, but coe1 mutants showed insensitivity to these chemicals. |
| | + | ===Expression === |
| | + | * '''''COE1''''' is preferentially expressed in leaf blades and flowers. |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| |
| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| − |
| |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo 113-0033, Japan, |
| | + | *Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Science, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan, |
| | + | *Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai 981-8555, Japan |
| | + | *Bioscience and Biotechnology Center, Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Sakaguchi J, Itoh J, Ito Y, Nakamura A, Fukuda H, Sawa S. COE1, an LRR-RLK |
| | + | responsible for commissural vein pattern formation in rice. Plant J. 2010 |
| | + | Aug;63(3):405-16. doi: 10.1111/j.1365-313X.2010.04250.x. PubMed PMID: 20487383. |
| | | | |
| − | ==References==
| + | </ref> |
| − | Please input cited references here.
| + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
| − | GeneName = Os08g0442700|
| |
| − | Description = Similar to SERK1 (Fragment)|
| |
| − | Version = NM_001068454.1 GI:115476645 GeneID:4345699|
| |
| − | Length = 5449 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0442700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| |
| − | AP = Chromosome 8:21666170..21671618|
| |
| − | CDS = 21666679..21667059,21667611..21668002,21669190..21669558,21669642..21669827,21669956..21670092<br>,21670277..21670336,21670453..21670524,21670646..21670789,21670949..21671020<br>,21671175..21671307,21671404..21671494|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008401:21666170..21671618
| |
| − | source=RiceChromosome08
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008401:21666170..21671618
| |
| − | source=RiceChromosome08
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggcctccaacctcttcctcctcctcttcttcctcgtcgtctcctacgcgccgttcctcgccttctcctccgagcccctcaaccctgaagtggaggcgctgatcgccatcaggcaggggctggtcgacccgcacggcgtgctgaacaactgggacgaggactccgtcgacccctgcagctgggccatggtcacctgctccgcccacaacctcgtcatcggcctgggagcgcccagccagggattgtcggggaccctgtccggcaggatcgccaacctcaccaatcttgaacaagtgctgctgcagaacaacaacatcaccggccggctgccgccggagctgggcgcgctgccgaggctgcagacgctcgacctctccaacaaccgcttctccggccgcgtccccgacacgctcggccgcctctccaccctccgatacctgaggctaaacaacaacagcttgtccggggcgttcccgtcgtcgctggccaagatcccacagctctccttcctggacttgtcctacaacaacctcactggccctgttcctcacttccccacaagaacattcaacgtcgtgggcaatccaatgatatgcgggagcagcagcggcagccatgcggggaacgcgaacgcagcggagtgcgccaccgtggtcgccccggtcaccgtgccattcccgctggactccactccgagcagcagcagcagggcggcagcggcagcggtggggaggtcaaagggtggaggaggcgccgcgcggttgccgatcggagtagggacaagccttggcgcctccgcgcttgtgctcctcgccgtctcctgctttctctggaggcgcaggcgccggcaccgctgcctcctctcgggcccctcctccgtcctcggcatcctcgagaaggggagagacgtggaggatgggggaggaggggaggtgatggcgaggctggggaacgtgaggcagttcgggctgagggagctgcacgcggcgacggacgggttcagcgcgaggaacatactggggaaaggagggttcggggacgtgtaccgggggaggctctccgacggcacggtcgtggcggtgaagcggctcaaggacccgaccgcgtccggggaggcgcagttccggacggaggtggagatgatcagcctcgccgtgcaccgccacctcctccgcctcgtcggcttctgcgccgcggcctccggcgagcgcctcctcgtctacccctacatgcccaacggcagcgtcgcctcccgccttcgagggaagccgccgctggactggcagacgaggaagcggatcgcggtggggacggcgaggggattgctgtacctgcacgagcagtgcgacccaaagatcatccaccgcgacgtgaaggccgcgaacgtgctgctggacgagtgccacgaggccgtcgtcggcgacttcgggctcgccaagctgctcgaccacggcgactcccacgtcaccacggcggtgcgcggcacggtggggcacatcgcgccggagtacctctccacggggcagtcgtcggagaagaccgacgtgttcggcttcggcatcctgctgctcgagctcgtcaccggccagcgcgcgctcgaggtcggcaagggctccggcgtcatccagcaccagaagggcgtcatgctcgattgggtgaggaaggtgcaccaagagaagctgcatgacttgctagtggaccaagatttggggcctcactacgacaggatagaggtggcggagatggtgcaggtggcgctgctctgcacccagttccagccgtctcaccggccgaggatgtcggaggtggtccggatgctggagggagacgggctcgccgagaaatgggaggccaaccaccggccggcggcgatggcggcggcggcggcgccccatgagctcggctacgaccaccgcaacgactccaacggctccgtcttcttcaacgacttccacgacaacgacagcagccttagcagcgacgaggtgcggtccatcgacatggtagaggagatggagctgtcagggccaaggtag</cdnaseq>|
| |
| − | AA = <aaseq>MASNLFLLLFFLVVSYAPFLAFSSEPLNPEVEALIAIRQGLVDP HGVLNNWDEDSVDPCSWAMVTCSAHNLVIGLGAPSQGLSGTLSGRIANLTNLEQVLLQ NNNITGRLPPELGALPRLQTLDLSNNRFSGRVPDTLGRLSTLRYLRLNNNSLSGAFPS SLAKIPQLSFLDLSYNNLTGPVPHFPTRTFNVVGNPMICGSSSGSHAGNANAAECATV VAPVTVPFPLDSTPSSSSRAAAAAVGRSKGGGGAARLPIGVGTSLGASALVLLAVSCF LWRRRRRHRCLLSGPSSVLGILEKGRDVEDGGGGEVMARLGNVRQFGLRELHAATDGF SARNILGKGGFGDVYRGRLSDGTVVAVKRLKDPTASGEAQFRTEVEMISLAVHRHLLR LVGFCAAASGERLLVYPYMPNGSVASRLRGKPPLDWQTRKRIAVGTARGLLYLHEQCD PKIIHRDVKAANVLLDECHEAVVGDFGLAKLLDHGDSHVTTAVRGTVGHIAPEYLSTG QSSEKTDVFGFGILLLELVTGQRALEVGKGSGVIQHQKGVMLDWVRKVHQEKLHDLLV DQDLGPHYDRIEVAEMVQVALLCTQFQPSHRPRMSEVVRMLEGDGLAEKWEANHRPAA MAAAAAPHELGYDHRNDSNGSVFFNDFHDNDSSLSSDEVRSIDMVEEMELSGPR</aaseq>|
| |
| − | DNA = <dnaseqindica>4560..4940#3617..4008#2061..2429#1792..1977#1527..1663#1283..1342#1095..1166#830..973#599..670#312..444#125..215#gacggctgattgcctgcctgcctcccctcacccctgcttctccttctccctccttctcacttttcttcctctcgggcgcctctcctctccatcattcctcccactgctccgctcccccattccaatggcctccaacctcttcctcctcctcttcttcctcgtcgtctcctacgcgccgttcctcgccttctcctccgagcccctcaaccctgaaggtacgtgcccttgtctgacgtttcttggaaccgaagatggctgcggctgatgagaccgcatgttggttgtatttggcgcggcgaatgcgcgtgcagtggaggcgctgatcgccatcaggcaggggctggtcgacccgcacggcgtgctgaacaactgggacgaggactccgtcgacccctgcagctgggccatggtcacctgctccgcccacaacctcgtcatcggcctgtaagctcgctctctctctctctctctctctctctcagtcttcgtcgtcgtcgtctagcttttgcttgttttgagcaacttagcgagagaccggaaatggcagccgaccggctcgatcagctccactaatgcgtgcttgtgtacctcgtctcaggggagcgcccagccagggattgtcggggaccctgtccggcaggatcgccaacctcaccaatcttgaacaagtgtaagcaagagaaagaaacttttgttttcttgtttaattgcttctgttagagattccaatcgattcatctcgtgttcttgggagaaatggaggaggaagaagcagagcagagcatcaaatggtgatgatgacgtcgtttgtcttcgactttgttttcaggctgctgcagaacaacaacatcaccggccggctgccgccggagctgggcgcgctgccgaggctgcagacgctcgacctctccaacaaccgcttctccggccgcgtccccgacacgctcggccgcctctccaccctccgatacctgtcagtcacttctctccccccaacacattccattccattccatactttactactctacactaaagctaaaatagtttaagttcttcatggttgtctcacttgcgtgttaatcttgccgcaggaggctaaacaacaacagcttgtccggggcgttcccgtcgtcgctggccaagatcccacagctctccttcctgtacgctaattaatccaactctgtcaaatcgtctcaattctttttgtcttgcatagccgatgaacggatcgatgtgattgatcttggtatggtttggtgtgcatgcgattttgcagggacttgtcctacaacaacctcactggccctgttcctcacttccccacaagaacattcaagtatggactactcctccctagtaccactgctcgtgcattcgtcttcttattctattccagccgccactagctatagctctgttacaacttataaaatactatagaaatatcccttggatgttttcgaatctgatgccgtgtttttttttcctttttcaatcatgttatgcgtgcacgcatgcagcgtcgtgggcaatccaatgatatgcgggagcagcagcggcagccatgcggggaacgcgaacgcagcggagtgcgccaccgtggtcgccccggtcaccgtgccattcccgctggactccactccgagcagcagcagcagtgagtccaacctcctctcgtcttgtctttgcattcttgggatcgatcggtttgggggatcggagggagtttaatcgtgttcgtttgggcgtatgtgcatgcatgcgcggtgtacgtgtgcactgcaggggcggcagcggcagcggtggggaggtcaaagggtggaggaggcgccgcgcggttgccgatcggagtagggacaagccttggcgcctccgcgcttgtgctcctcgccgtctcctgctttctctggaggcgcaggcgccggcaccgctgcctcctctcgggcccctcctccgtcctcggcatcctcggtacgccacgtccccatcaacaccagtactaaaatgcacgatcgatcagttagttaatatgtgagtgtaattggtgatttcagagaaggggagagacgtggaggatgggggaggaggggaggtgatggcgaggctggggaacgtgaggcagttcgggctgagggagctgcacgcggcgacggacgggttcagcgcgaggaacatactggggaaaggagggttcggggacgtgtaccgggggaggctctccgacggcacggtcgtggcggtgaagcggctcaaggacccgaccgcgtccggggaggcgcagttccggacggaggtggagatgatcagcctcgccgtgcaccgccacctcctccgcctcgtcggcttctgcgccgcggcctccggcgagcgcctcctcgtctacccctacatgcccaacggcagcgtcgcctcccgccttcgaggtacgttacgtacgcttaacgtgacacacgcaacacagtggtagtgtcgatttcgtgggtgcgtggtgtgtgggtcccgcgtgcgcgttggggtgcacgcaggagtcatggggatggatcagtcgtagtccccgtccccctgtgtgtcagcgtggtcaggcgtggtcgcgcctccaccccgtcctgtactttgcctcctcccccacgggccccactcgccaggcgccaccgcactcacgttttgtccgcttcaccggcgtgcgcgtccttcctcgctgcgcggcgcaacaacggcgtgcggctggttcaccggccgccgcggctgtagcagtaaattgggcaaacatgatgacgagtggtcatcaggggctcagggttgaggtctgggtgtaacgcgatcattgcgatggtttttatacagtactacctccgtcccaaaataagtgtagccataagtttctgtacccaactttgattatccgttttatttgaaatttttttataattagtatttttgttgttatgagatgataaaacatgaatagtactttattcatggcttatgtttttaattttttcaaaaagtttttaaataagacgaacggttaaagttagacgcggaaaaccataattgtacttattttggaacagagggagtaacagtaggagtagtgctgccacggtgcttggggtttttggagatcggtgtggtggtccgggtgggagggggccaccggtcaggggagttgcagggaaacgtttgtttcttcttttattccggcagggggccggcctcctcctctccctagccgcagctgttgcaggggaggcagccagcggcagcacaggctatacgtgccccagctacgctacgagcccgtgtgtctggtcgctgttgccggcttgttgctgcgtgctcgcatgtgccaacaagtttgtggcatactgtacacgtcgttatttcagtagtacgtacgttggccgcgttcgtggtttttgttcacgatgcagggggacgtacgggttctgtataccctacgtaccttgctggttcaaacatagcaactgtatgcagcatttatactcacaagcaattggcgttttgttgtcttgtgctgcgcattgagaactgaaattgtttggagcaaattttgttgaaacatttgttacgcaaaaaatttatgaagggaagccgccgctggactggcagacgaggaagcggatcgcggtggggacggcgaggggattgctgtacctgcacgagcagtgcgacccaaagatcatccaccgcgacgtgaaggccgcgaacgtgctgctggacgagtgccacgaggccgtcgtcggcgacttcgggctcgccaagctgctcgaccacggcgactcccacgtcaccacggcggtgcgcggcacggtggggcacatcgcgccggagtacctctccacggggcagtcgtcggagaagaccgacgtgttcggcttcggcatcctgctgctcgagctcgtcaccggccagcgcgcgctcgaggtcggcaagggctccggcgtcatccagcaccagaagggcgtcatgctcgattgggtaagcatgcacttccacatttcttctccaattttcagctttttttagctgctgtttgagccgtgatcgaaaagatgttgcactagttcttgtttgacgaattaaaagcctcggttgctttgatcgagcccgtacgtgaatgtctttggtaaagttcgcaaatcttttgcgaaagatccatccagtacactagcatgtgcgttcattgcgcgcgcggtcactggctcactgcactttgaggcgctgctcattcaatagcaacttctagtgaatctgatgctcgaatgacagtagtcagtaggcgccccaactgtcagtctaagattaattgcgagtactatgaacctgacatactaacgcaatcctgcaagcattgccactgcatgtttgaatgctgatcgtcctcccacgtactgttcactctgcatatggcatgcaaatgacttgcttctgaaaaatgacaatgtcttcaactacttaatctccatgtgtaaatgatctgaaaattttcttcttttttgttttcgttcgatcgtgttatcaaaatgaaggtgaggaaggtgcaccaagagaagctgcatgacttgctagtggaccaagatttggggcctcactacgacaggatagaggtggcggagatggtgcaggtggcgctgctctgcacccagttccagccgtctcaccggccgaggatgtcggaggtggtccggatgctggagggagacgggctcgccgagaaatgggaggccaaccaccggccggcggcgatggcggcggcggcggcgccccatgagctcggctacgaccaccgcaacgactccaacggctccgtcttcttcaacgacttccacgacaacgacagcagccttagcagcgacgaggtgcggtccatcgacatggtagaggagatggagctgtcagggccaaggtagcagcagaatgcagcagagcattcagagcactgaaaaagaaattcagagaatcagatattcagggagagtacttcaggaaaaaaagagaagaaaaatatattacagagggaagggattggatttgttgctagctggagtagtacgagtagtttcaaagtgattgagatgctttttagttttagaccacagtgtgtagtttctgtctgatcaaagagaggccctttccccgagaaagatgtaaagaaaaaggggctcctcctctccggtttctcttttgcttcttttcacaggcttctttatcttttgctgctgctgctttcttttctctctttcttttgttgatttggggacggacatggcacatgcagcgctgcagaagacctttggtttgcattctggccctgatctcgagcaaacttttgcagtacacccctgttcatatatgtatgggcttcttctgaattctgaactccttatctgtatcactgtatgtaaggggagggatgttg</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068454.1 RefSeq:Os08g0442700]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 8]]
| |
| − | [[Category:Chromosome 8]]
| |
