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| − | {{JaponicaGene|
| + | The rice gene Os09g0506800 was reported as '''''Pair2''''' in 2004<ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os09g0506800|
| |
| − | Description = Similar to Meiotic asynaptic mutant 1|
| |
| − | Version = NM_001070145.1 GI:115480032 GeneID:4347514|
| |
| − | Length = 8039 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os09g0506800, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os09g0506800 <=> Pair2, OsASY1 |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
| + | * '''''PAIR2''''' gene is essential for homologous chromosome pairing in meiosis, as in the case of the genes '''''ASY1''''' and '''''HOP1'''''. |
| − | AP = Chromosome 9:20274353..20282391|
| + | |
| − | CDS = 20274455..20274457,20274533..20274589,20277353..20277449,20277542..20277610,20277694..20277786<br>,20277902..20278025,20278612..20278681,20278754..20278795,20278953..20279081<br>,20279176..20279283,20279437..20279479,20279548..20279586,20279784..20279908<br>,20280105..20280117,20280212..20280282,20280374..20280478,20280557..20280707<br>,20281223..20281308,20281416..20281470,20281567..20281736,20281868..20281981<br>,20282100..20282165|
| + | * The researchers suggested the possibility that a highly homologous copy of the '''''PAIR2''''' gene located on a different chromosome is in fact a pseudogene. |
| − | GCID = <gbrowseImage1>
| + | ===Mutation=== |
| − | name=NC_008402:20274353..20282391
| + | * To elucidate the genetic system that establishes homologous chromosome pairing in monocot plants, the researchers have isolated an asynaptic mutant of rice, designated pair2 (homologous pairing aberration in rice meiosis 2), in which 24 completely unpaired univalents are observed at pachytene and diakinesis. |
| − | source=RiceChromosome09
| + | |
| − | preset=GeneLocation
| + | ===Expression === |
| − | </gbrowseImage1>| | + | * Mature '''''PAIR2''''' mRNA and several splicing variants were found to be highly expressed in wild-type reproductive tissues, and lower expression was also detected in vegetative tissues. |
| − | GSID = <gbrowseImage2>
| + | * In situ hybridization and BrdU incorporation experiments revealed that '''''PAIR2''''' expression is specifically enhanced in male and female meiocytes, but not in those at pre-meiotic S phase or in the pollen maturation stages. |
| − | name=NC_008402:20274353..20282391
| + | ===Evolution=== |
| − | source=RiceChromosome09
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage2>| | + | ==Labs working on this gene== |
| − | CDNA = <cdnaseq>atggtgatggctcagaagacgaaggaggcggagatcacggagcaggattcgctgcttctgacaaggaatttgctccgcattgctatatacaacatcagctacatcagaggtctattccctgagaagtacttcaatgataagtcggttccggcactagagatgaagattaagaagctaatgcccatggatactgagtcgaggaggttgattgattggatggaaaaaggtgtctatgatgcactacagaagaaatatctcaagacccttctcttctgcatctgtgagaaggaggaaggcccaatgattgaggagtatgcattctcatttagctaccccaacacgagcggtgatgaagttgcaatgaacttgagccgcacagggagcaagaaaaacagtgctacatttaaatcaaatgcagcagaagtcactcctgatcagatgaggagctctgcttgtaagatgataagaacactggtttcacttatgaggaccttggaccaaatgccagaggagaggaccattctaatgaagctgctatactacgatgatgtcacacctgaagattacgagccacccttttttaagtgttgcgctgacaacgaggccataaatatatggaacaagaaccccttgaagatggaagttggaaatgtcaatagcaagcatctcgtgttagctttgaaggtcaagagtgtccttgacccttgtgatgataacaatgtcaacagtgaagatgataatatgagcttggataatgaatctgaccaagataatgatttttctgacactgaggttcgcccatctgaagcagagcgttacattgttgctccaaatgatgggacttgcaaaggtcaaaatggtacaatctcagaagatgatactcaagatcctgttcacgaggaagagctaacagctcaagtaagagagtggatatgctcaagagacactgaaagtcttgaggtttcagatgtccttgttaatttccccgacatatcaatggaaatggttgaagatattatggagaggctacttaaagatggtttactatccagagcaaaaaaggatagttattctgttaataagattgctgatcctacaacaccacacataaagaaagaggtcatcatgcaaaatgtctcacctactgaaggaactaaaaatagcaatggtgatctgatgtatatgaaggcactgtaccatgcacttccaatggattatgtgtcagtaggcaaacttcatggcaagctagatggggaggccagccagaacatggttcgtaagttgattgaaaaaatggtgcaagacggatatgtcaagaattcagccaaccgaagactaggcaaagctgtcattcattctgaagtcaccaacagaaagctccttgagataaaaaagattctggaagtcgatatagccgaacaaatggccattgataccaatgcagaacctggtgagcctgagcgcaaagaccacctgagtggccatgaaatgagagatggatcgacgatgggttgcctccagtccgtcggatctgacctcacccgcacccgggagcttccggagccgcagcagaacgtgtccatgcagagcgggcaggaagcttccacggtggataaggatccaagcaggactcctacaagcgtgcgcgaggcgtccgtttgttccctggagagtggggttctcgggcagaaggtcagaaagtctttggctggtgctggcgggacgcagtgctcgcaggacaagcgattcaggaaggccagcacggtgaaggagccgatcctccagtacgtcaagcgccagaagtcccaagttcaagttcaagttcagtga</cdnaseq>|
| + | * Experimental Farm and Plant Genetics Laboratory, National Institute of Genetics, Yata 1111, 411-8540 Mishima, Shizuoka, Japan |
| − | AA = <aaseq>MVMAQKTKEAEITEQDSLLLTRNLLRIAIYNISYIRGLFPEKYF NDKSVPALEMKIKKLMPMDTESRRLIDWMEKGVYDALQKKYLKTLLFCICEKEEGPMI EEYAFSFSYPNTSGDEVAMNLSRTGSKKNSATFKSNAAEVTPDQMRSSACKMIRTLVS LMRTLDQMPEERTILMKLLYYDDVTPEDYEPPFFKCCADNEAINIWNKNPLKMEVGNV NSKHLVLALKVKSVLDPCDDNNVNSEDDNMSLDNESDQDNDFSDTEVRPSEAERYIVA PNDGTCKGQNGTISEDDTQDPVHEEELTAQVREWICSRDTESLEVSDVLVNFPDISME MVEDIMERLLKDGLLSRAKKDSYSVNKIADPTTPHIKKEVIMQNVSPTEGTKNSNGDL MYMKALYHALPMDYVSVGKLHGKLDGEASQNMVRKLIEKMVQDGYVKNSANRRLGKAV IHSEVTNRKLLEIKKILEVDIAEQMAIDTNAEPGEPERKDHLSGHEMRDGSTMGCLQS VGSDLTRTRELPEPQQNVSMQSGQEASTVDKDPSRTPTSVREASVCSLESGVLGQKVR KSLAGAGGTQCSQDKRFRKASTVKEPILQYVKRQKSQVQVQVQ</aaseq>|
| + | * Biotechnology Section, Agricultural Experiment Station, Toyama Agricultural Research Center, Yoshioka 1124-1, 939-8153 Toyama, Japan |
| − | DNA = <dnaseqindica>103..105#181..237#3001..3097#3190..3258#3342..3434#3550..3673#4260..4329#4402..4443#4601..4729#4824..4931#5085..5127#5196..5234#5432..5556#5753..5765#5860..5930#6022..6126#6205..6355#6871..6956#7064..7118#7215..7384#7516..7629#7748..7813#aaagccccgcaaattctctcgctctctctctctctctctctcccactcctctcccctctcccttctctcatctcgcgcgcggcgcgccgccgtagagacgaaatggtgggttctcgcttcgatttcgcgttgcgcttgctggtgtgtgcgtgctgatcggagtgggtgattgcgatgcaggtgatggctcagaagacgaaggaggcggagatcacggagcaggattcgctgcttctggtgagtttttttttctctcctcgcccatctcctgttcgattcccgtgcgactttcgatttcggtggttcggtgccggacatcggatcggttcacccgatcgagggttttctgccgaggtttttgggaggtttttcgctgtggatttgatcgctcgtgtggtgtactggggtttgcagtagctggcgttcgatttgggtttgattcgagtgttggtggtcacgcgtgtcggatttcccccccccccccactttgcgagtgcttttgggtggaattaactgttgctttgctgattttaaccgatttctcgtgcggattttggatgtgtttggagatcgtcgtggggttttgggtttctcgctttctctggtagtctccgtccgctgactaccaaatggtgctagttgggcggccagtgcgaagcatcagtagcatctcactttgctagtgtttttgggtggatttcattggtgctttgcagattttaaccgatttctcgtgcggatttaggcgtgtttggagcatgagtcctgggatttttgtttcacttcctctggtgctctccgcccgttcaaaagcttctgggtatctcagattggagttggtttctggtttctccgtgtagcactatctctcgaatgcgtaactgatggatcgtttcggtatcgcactgaatgatgattcggtggtttttctccctgctgcttgatcgatgtgagttttgtttctctggtttgaggcaccgaatctgttctcgtgaaaattttttgacataatgttctcgtgaaaaatctctggttggtttgctaaatttcgcagaaattttgagcagaatttctactggtttgtgcgattctctcagcattagaattttgttgaacggatcacatcactttgttttgctactcgcgtggtgattcggttgggatttcaaggagacattcactggtttgataatcgcgtttcgatttggtttcgttgtgatacccacaggcatttgcctgattgtttgtgcgtagaccatcgtgctggaaacataggcgcatagtctctgcagtctgcgtagttgatcaaattggtagggttgaaagtttttttccctggcttagatatccttgcgaagaatttcgaattcaagtcgtgttgtttcgaactgtttcgccagaagcatctaaggaattgttcagttcgttgaacttctcatgtgctttgcgtttggaatctcttctgaagtgttttgggagcagcagttacagtgagtaacttcattttgcttccgaaatgcttgcttgaacatggaatcgagacacgactcgtattggcctgggcctggttgttcaggatttccatttctgacagtcgtatgagtcgattttttcaaatgtttccagtaggcttgttagttgtttgggttttgaacaaacgttgcctaccttggttggaattctaggagacattcgctggtttgataatcccgtttcgtttttgtttcgttgtgaaacccacgagcattggcctgatgatttgtgcgtagatgattatatgctggaatcatgggtgcataccccccacggttcactgaatcgatcaaattggcagggcctaaaaaggttttttccttgcttccatagccttgtgaagagtttctacttccaatcgttttgaatcatattgttagaagcatctaaaatttattcagttcgttgaattcttgctgtgcttgcttttggtatctctttagacttcagagtttttttggcagcagcagattccatgagtaattttagtttctcttttcaaacttgttgcttggacgtggaattgagacaccacagtaccacacgtattggtttggttattcccagatttcctgttctgatagttctatgacctaattcttcttctgttttttaaaatatttccgatacactactttgggtttgaacagacatttgcttaatcctgcattagtttgtgataagaaaagctgcacttctgtttataatcggttattttgttgcgctatcatttgaatttggaatttatgttatgcctttaggaattatatgccagcttattaaacctctgctggcatgatttttagactagcccccactctcactcctattttaacatctttgttagatactcggtttaataagtggacattggctttgccacatgagttttaggattactggttgatcaccaaactttggtacctcttgtactttcaaaaaaccagttggtttatatccaatcaaataatgtttttctttgtcttttctagtacttgtttgctcacatggtcagctgcactttgcctagaagtgcttaggatcccatgactgcaagtgcatagtaggtgaaatatatcgtatggtccatgttcatttatgcatttgttaagaaatttattgcaggtgtgtgtttgaatgggactggtaccctatttgattcaacatgtgctaaagtattgaaaagcatgacacatttgttgtttggtgaacttttgtgcctcaccttgtttggcaagcccaaaaccctgggccatgctccaggatgggctaggaaactgaactacaatttcagtccatccctgggggtggaccaggatccaataaggcctaaacttgttaatcagtaatccaatttgtgatgattttattgcccttctatttctattacattgaatactgaactctctttgaattatgtatggtagaacgctattgtgataacgtggtgatattttgaccaaacagacaaggaatttgctccgcattgctatatacaacatcagctacatcagaggtctattccctgagaagtacttcaatgataagtcggttccggcactaggtcacattacctatagtccctaacccttttatacaccaaattcctcagatgatatgatattattagctggaacacccttttatttattgcagagatgaagattaagaagctaatgcccatggatactgagtcgaggaggttgattgattggatggaaaaaggtgaaaatatgtcctgttttacgtgttaaatctttttaattttccaatttgttcatttaatccatttttgtgataaattttaggtgtctatgatgcactacagaagaaatatctcaagacccttctcttctgcatctgtgagaaggaggaaggcccaatgattgaggagtatgcatgtgagtattaccatgtgaaatatggctaacttctagcatacaaagttggttttacatcagtgattgtgggtcatatgtcaaacattttcttattctgtgtcaaactcccctgcagtctcatttagctaccccaacacgagcggtgatgaagttgcaatgaacttgagccgcacagggagcaagaaaaacagtgctacatttaaatcaaatgcagcagaagtcactcctgatcagatgaggttctctcatacatatcccttttaaaggctatgattcattctagacttctagttagttatccatgctgcttagctaaatgctacgatttaatggttaatttttcatattgcttagcattatacattttggagagtgtttgtttaatgaagttgcagtcccaacataacaatagtttaaaattttatgatttcaaagaagtaggagcaaattgatgactaaaaggagttcagattttctttttctatgtaaggaatgtggtgaaaaagtgaggtacatagattccagtaactttgtaaatttaggtacataggactgtgaggtggcaataaatgatgtaaatcctttttaaaaacatagttgggcttataattttgagtccaacttttctgcgagttgttcttaaatattcttccacaacttgcagaattctagttctgaaggtatggtttcaatttagtcctttagataagctcattaatggttgtttattggtttttatatgtgtatggcaattgcaaagtaattattgtaagctttaactagtcactgctgatatcctgacatgatcatatggttcccaatcaggagctctgcttgtaagatgataagaacactggtttcacttatgaggaccttggaccaaatgccagaggaggtaatttttgcacttcacagatttgttacaatggattgaacttacctaatgctatcctgtatttgtcctcagaggaccattctaatgaagctgctatactacgatgatgtcacagtgagtgcagcaatttgttcttgctatttactgaaacttgaagccgccataatagataattatttttgctctgaacaaatgaaggattcaaccttttctgttctatagaactttgttcgtggaatcgaaaacagttaatttattatgctatttgcagcctgaagattacgagccacccttttttaagtgttgcgctgacaacgaggccataaatatatggaacaagaaccccttgaagatggaagttggaaatgtcaatagcaagcatctcgtgttagctttgaaggtagtggattatggagatagcagtcgtttggaccaggaaacctctgttttctcaattaaactcattgctacatatgtttttattctttatgcaggtcaagagtgtccttgacccttgtgatgataacaatgtcaacagtgaagatgataatatgagcttggataatgaatctgaccaagataatgatttttctgacactgaggtaaagacctaagagaacatataattgagcatctttattagtgagattctcttaattttctccttagtgtgctgtgatgccacctttcgatgtatacgcatatttttgtcttccttttacctgtagtatagactgaatcgctaattctattaggttcgcccatctgaagcagagcgttacattgttgctccaaatggtaaagtttctttgtttgtattcttgttgtactttctgtttttggtgctaacatacttatcaaaatagatgggacttgcaaaggtcaaaatggtacaatctcagaaggtcagttaatttgatctgagagcttcatctgtgcatccttttccatacaaatgaattttatgtcaactattaagttattattcaaatgtttggatgctcatttaatttttcatgaagtgtgcaatacatgttcaacattctctgactctgtagtacctgaaaatttcatacgtttctctgactttgtatgtttgcagatgatactcaagatcctgttcacgaggaagagctaacagctcaagtaagagagtggatatgctcaagagacactgaaagtcttgaggtttcagatgtccttgttaatttccccgacatatcaatggtaatgcctactggtatttcatttatataataaaatagctatttagagtatttactgttttgtgctagacttacaagtaggtcacaaacttttacccgcttttatgtcatcagtgtttataaatcaaacaatatcttgatatactgtatgagctgtatggctggctattaacaatatcttgttgaatgctttgcaggaaatggttgaaggtagtggtgtgaaaaacttatgtgtgcttaccaggcattctttcttcactctcactaaagccttgaaatacttgactaatgactcacttttcagatattatggagaggctacttaaagatggtttactatccagagcaaaaaaggatagttattctgttaataaggtcaaccaaacattttcttcatgtgctatattttagttttaccctgtggcatattgtactgtccatcactagcatcatagagtggcttcagattgctgatcctacaacaccacacataaagaaagaggtcatcatgcaaaatgtctcacctactgaaggaactaaaaatagcaatggtgatctgatgtatatgaaggtgtatctctgtcgcttacccttggcttgtatttggaggtcatcatgtcatttctgctgatatatatcgttgctacaggcactgtaccatgcacttccaatggattatgtgtcagtaggcaaacttcatggcaagctagatggggaggccagccagaacatggttcgtaagttgattgaaaaaatggtgcaagacggatatgtcaagaattcagccaaccgaagactaggtaacaccttgaactaatctcttgcaaaatctcaaatgcttctattctatggtacattatttacttttctggtttagtctgtcagccaggagcaagttatgtattgtttgctcaattctgttacaactgtgaaaggagaataactgaatcaacatgccaactgagtgtcattttctacatagattgtgcaacttcaagtgattaccttttgtcatgttcacttattatatgaagaactgtcaacaacttctcttgaagaaggattttggatgcctcatgaaaaacattgtctaactgtaatacttgtgaagaatatacatgtactgaagctgttgctgctttagatgaaaactaatgattttaggaacttcagatacatcactcttatcttttcagattgaccattgccgccatgcattgtactaatagaactagtactaatctttgagcaaatgactgattcactactactgtgcaccataccatcttatggcctatgtcactctattttacaggcaaagctgtcattcattctgaagtcaccaacagaaagctccttgagataaaaaagattctggaagtcgatatagccgaacaaatggtaccataatcatatctaacagcaccaagtttttatctagtaattctttgcattccacaacattcattttattcatggttaatctgaaactctgcttcatcatgcaggccattgataccaatgcagaacctggtgagcctgagcgcaaagaccacctgagtggtaatggcaacaacaatccgcatctccatggacttggcatctgtctttgcgtatatagtactaacatgacattgtccaatatgtttctctttataggccatgaaatgagagatggatcgacgatgggttgcctccagtccgtcggatctgacctcacccgcacccgggagcttccggagccgcagcagaacgtgtccatgcagagcgggcaggaagcttccacggtggataaggatccaagcaggactcctacaagcgtgcgcgaggtataaccgaaacctgatcccctactaaccacagacgattctgagccatatgcgactcagaatccaggtaaattaaatcacagacaaacgtagagctgaaggtgatgaactgtgtgatacctttgcagcaggcgtccgtttgttccctggagagtggggttctcgggcagaaggtcagaaagtctttggctggtgctggcgggacgcagtgctcgcaggacaagcgattcaggaaggccagcacggtaaactctccatgtcccaactctgaactgaaacatctggcatttggcatgtactagtatttggcatttggcgctgtaatcaagttgagtttaattgatcccgtgaaaatgaccgcaggtgaaggagccgatcctccagtacgtcaagcgccagaagtcccaagttcaagttcaagttcagtgagggttcgtgtcgcaagcgtcaggagcaactaacatcgtagttcaggtgcagaagaccacaagtagatatatccatcctattcctagttccggtgctcaagtttgtgcagatagtcagagagcactcacgcacacgtagatatctgtccatgccgctgtcccaaatggcaaatggagatagacgctactatgtgctaacacacactcaaattaagcattcaaaacgc</dnaseqindica>|
| + | * Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602 Tsukuba, Ibaraki, Japan |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070145.1 RefSeq:Os09g0506800]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Nonomura KI, Nakano M, Murata K, Miyoshi K, Eiguchi M, Miyao A, Hirochika H, |
| − | [[Category:Oryza Sativa Japonica Group]] | + | Kurata N. An insertional mutation in the rice PAIR2 gene, the ortholog of |
| − | [[Category:Japonica Genes]] | + | Arabidopsis ASY1, results in a defect in homologous chromosome pairing during |
| − | [[Category:Japonica Chromosome 9]]
| + | meiosis. Mol Genet Genomics. 2004 Mar;271(2):121-9. PubMed PMID: 14758540. |
| − | [[Category:Chromosome 9]]
| + | |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]] |
