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| − | Please input one-sentence summary here.
| + | The rice gene Os11g0102200 was reported as '''''phot1a''''' in 2009<ref name="ref1" /> by researchers from Korea. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os11g0102200 <=> phot1a, osphot1a |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The defect of '''''Os Phot1a''''' affects degradation of chlorophylls and carotenoids, and under photosynthetically active photon fluxes, mutation of phot1a results in loss of photosynthetic capacity owing to the damage of photosystems caused by elevated H2O2 accumulation, leading to a reduction in plant growth. |
| | + | ===Mutation=== |
| | + | * When '''''phot1a''''' mutants were grown under WL (100) and BL (40 lmol m-2 s-1), they demonstrated a considerable reduction in photosynthetic capacity, which included decreased leaf CO2 uptake and plant growth. |
| | + | * Pigment analysis showed no significant difference between wild-type and mutants in the Chl a:b ratios, whereas in the latter, total concentration was reduced (a 2-fold decrease). Carotenoid contents of the mutants were also decreased considerably, implying the involvement of phot1a in pigment degradation. |
| | + | * Deletion of '''''phot1a''''' showed higher contents of H2O2 in leaves. Chloroplastic APX and SOD activities were lower in the mutants whereas the activities of cytosolic enzymes were increased. |
| | + | * Immunoblotting indicated reduced accumulation of photosystem proteins (D1, D2, CP43, Lhca2, and PsaC) relative to the other light-harvesting complexes in the mutant. |
| | + | [[File:Os11g0102200-1.png|center|thumb|400px|'''Fig. 2 Growth phenotype of wild-type and phot1a mutant plants.''' '' <ref name="ref1" />.'']] |
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| − | ===Expression=== | + | ===Expression === |
| − | Please input expression information here.
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| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| | + | ==Labs working on this gene== |
| | + | * Environmental Biotechnology and Research Center, Gyeongsang National University, Jinju 660-701, South Korea |
| | + | * Research Institute for Basic Sciences, Cheju National University, Jeju 690-756, South Korea |
| | + | * Department of Life Sciences, Pohang University of Science and Technology, Pohang 790-784, South Korea |
| | + | * Department of Wood Science and Technology, BK21 Program, Chonnam National University, Gwangju 500-757, South Korea |
| | + | * Department of Molecular Biology, Pusan National University, Busan 609-735, South Korea |
| | + | * Department of Biology, Kyungpook National University, Daegu 702-701, South Korea |
| | + | * Department of Biology, Chungnam National University, Taejon 305-764, South Korea |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Goh CH, Jang S, Jung S, Kim HS, Kang HG, Park YI, Bae HJ, Lee CH, An G. Rice |
| | + | phot1a mutation reduces plant growth by affecting photosynthetic responses to |
| | + | light during early seedling growth. Plant Mol Biol. 2009 Mar;69(5):605-19. doi: |
| | + | 10.1007/s11103-008-9442-1. PubMed PMID: 19089317. |
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| − | ==Labs working on this gene==
| + | </ref> |
| − | Please input related labs here.
| + | </references> |
| | | | |
| − | ==References==
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| − | Please input cited references here.
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| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 11]] |
| − | GeneName = Os11g0102200|
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| − | Description = Similar to NPH1-1|
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| − | Version = NM_001071759.1 GI:115483706 GeneID:4349531|
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| − | Length = 14608 bp|
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| − | Definition = Oryza sativa Japonica Group Os11g0102200, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
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| − | AP = Chromosome 11:78455..93062|
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| − | CDS = 78629..78641,84559..85063,85136..85318,85419..85510,85628..85901<br>,85977..86190,86295..86365,86540..86646,87104..87153<br>,87262..87345,88197..88256,88333..88422,88961..89037<br>,89160..89244,89362..89442,89630..89733,89931..89980<br>,90764..90870,91743..91865,91978..92029,92230..92342<br>,92404..92544,92656..92745|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008404:78455..93062
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| − | source=RiceChromosome11
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008404:78455..93062
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| − | source=RiceChromosome11
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggcttccaaaggcacagaaggaggccatggtggcgtggagagaaaggagcagcagcagcagaggggttaccagctgccccgtgactcccggggatcactcgaggtgttcaacccctcatccgcttcctccttccgcactgctgctgccgcccccaagtccgcctcccccttccttgctattcccgacagggaagaggataatgtggtggcacagcagcgggcagcagagtggggcctcgtcctccagaccgaccaccacacaggcctcccccagggcgtctccgcacgaccctcctctggctctgcacgcaccagctctgaggacaacccacagcaacagcagagcgccgccgccatcccacgggtgtcggaggagctacgggcggcactatcagtgttccaacagacgtttgtggtgtctgatgccacccaccccaaccaccccatcatgtacgccagcgctggcttcttcaacatgaccggctatacctccaaggaggttgtcggcaggaactgccgcttccttcaaggctctggcaccgacccccatgagattgacaagatcaggcaatccctcgcaaatggctccaactattgtggccgcatcctcaactacaagaaggacggcacgccattctggaacctcttaaccattgcccctatcaaggatgaggacggcaggctcctcaagttcatcgggatgcaagtggaagttagtaaatacactgaagggaaaaaggatactgttgttcgtccaaatggactttcagaatcactcatcaaatacgatgctcgacagaaggatcacgcccgtagctcagtgtctgagctcttgttggctctcaaaaatccacgctcattgtcagaatcaagcaataacaccttaaaaagaaaatcacaagaatccctaagcatgtcaatgagcgaagttcctagtaagagaagctctgaaagtggatctcgccgaaattctcgtagcggaacaaggagctcgcttcagaagatcaatgaagtacctgatcaagtgaatagaactagaaaatctggtctgcgtgcatttatgggttttcttggtatgggccatggaagtgtagagaagaacatgctgaaacctagagatgaagatccactgatcgatagtgatgatgaaagacctgagagctttgaagatgagtttaggaggaaagaaatgaggaggggtatagacttggctactacacttgaacgtattgagaagaattttgtcatcacagatccaaggttgcctgataatcccattatatttgcatccgatagctttctgcaattgacagaatacaaccgtgaagaaatattagggagaaactgcaggtttcttcaaggccctgaaactgatcgtgcaacagttaggaagataagagatgccatagataaccaggcagaggtcacagttcagctcataaattatacaaaaagtggtaaaaagttttggaacctctttcacttgcaaccaatgcgtgatcaaaagggtgatgttcagtactttattggggttcaattggatggaactgagcatgttcaggatgatgctgcaaaagagggagtcgtgctggttaagaaaaccgcagataatatcgatgaggctgcaaaggaactcccggatgctaatttgagaccgaaagatctatgggctaaccactcaaaagtagtcctgccaaatccacatatgaaggatactgcatcatggagagccatccaaaaggttctcgagagtggtgaaagtattggtttaaaacattttaggccagtaaaaccattaggatctggtgacactggaagtgtacacttggtagagttgttgaatacaggagaatactttgccatgaaagctatggataaaagcatcatgcttaaccgcaataaggttcacagagctactgctgaacgccaaatccttgatctattagatcacccattccttccaacattatatgcatcatttcagacaaaaacgcatatatgcctcattactgactactgcccgggtggtgagctctttgtgcttctagataatcaacctctgaaggttctacatgaagatgcagtcaggttctatgctgccgaagtggttgttgcactagaatacctacattgccaaggtataatataccgagacttaaaaccagagaatatcttacttcatagagatgggcacatctcccttacagacttcgatttgtcttgtctaacatcttgcagaccgcaggtctttcttcccgaagatgctgatgagaaaaaagggagaaaaaacgggagttaccccatattttttgctgaacctatgcgagcatccaattcatttgttggcacggaggagtacattgcgcctgagattattacaggagctggccatacaagcgctgttgattggtgggctctagggattcttctatatgaaatgttgtatggttatacaccttttagaggaaaaacgaggcaacggacatttgctaatatcttgcacaaggatatcagatttcctgctagtatatcggtcagcctagcggcgaggcagctaatgtataggttgctacatagggatcctgccaacaggctagggtcctacgagggagccaatgagataaaaggacatccctttttccgtggtataaattggcctcttatacgcgccacggcgcctccaaagttggagatcccactattttccaaggatgacatggagaagaagggactagtaacaaataaccgcacggatatgttctga</cdnaseq>|
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| − | AA = <aaseq>MASKGTEGGHGGVERKEQQQQRGYQLPRDSRGSLEVFNPSSASS FRTAAAAPKSASPFLAIPDREEDNVVAQQRAAEWGLVLQTDHHTGLPQGVSARPSSGS ARTSSEDNPQQQQSAAAIPRVSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNM TGYTSKEVVGRNCRFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLT IAPIKDEDGRLLKFIGMQVEVSKYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSVS ELLLALKNPRSLSESSNNTLKRKSQESLSMSMSEVPSKRSSESGSRRNSRSGTRSSLQ KINEVPDQVNRTRKSGLRAFMGFLGMGHGSVEKNMLKPRDEDPLIDSDDERPESFEDE FRRKEMRRGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNC RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQY FIGVQLDGTEHVQDDAAKEGVVLVKKTADNIDEAAKELPDANLRPKDLWANHSKVVLP NPHMKDTASWRAIQKVLESGESIGLKHFRPVKPLGSGDTGSVHLVELLNTGEYFAMKA MDKSIMLNRNKVHRATAERQILDLLDHPFLPTLYASFQTKTHICLITDYCPGGELFVL LDNQPLKVLHEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENILLHRDGHISLTDFDL SCLTSCRPQVFLPEDADEKKGRKNGSYPIFFAEPMRASNSFVGTEEYIAPEIITGAGH TSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDIRFPASISVSLAARQLMYR LLHRDPANRLGSYEGANEIKGHPFFRGINWPLIRATAPPKLEIPLFSKDDMEKKGLVT NNRTDMF</aaseq>|
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| − | DNA = <dnaseqindica>175..187#6105..6609#6682..6864#6965..7056#7174..7447#7523..7736#7841..7911#8086..8192#8650..8699#8808..8891#9743..9802#9879..9968#10507..10583#10706..10790#10908..10988#11176..11279#11477..11526#12310..12416#13289..13411#13524..13575#13776..13888#13950..14090#14202..14291#agtagctagccagtccagtccaagagatcgatcgagaaacagaggatcggagaggaggaagaaggagaatccaagtactgggaggcaattaatttgagttgagatcgacttgagagctagcagaggctcatctcatctaggccagcagaggctcttcgctcgcttatttcatccatggcttccaaaggtatgtactactagctagtatcttaatttctatctatatctatatctatatatgctgaatttactgaattcgattgatcgtacgtttgtggaccgatttatcgatcggttaataatatactataagcagctagctggagtagcttaatcactactttgaggaaagaagtaattaatttgctcaatcgttcaattctttcttcgttaagcaagcatgtagaatatctaacctactctctctatatatatatatatatgcaaaattaagctgacgggcagggtgattttgaggccagctctctgctgcatgcatatatactccatataacttaatatgtactaaatatttttctggtatataatagtacttgtggatttactagctagcaagtactcaaactaatgtacttagcgagtgtttactgtgctgcctgcagtaatactcctaattaatagagagagctagaaagcagagagtgataggcggaggtccctcaggcgcagggtgagggaaagaaataaagtgcaggattatcgatggatgtgccttatccaatataatcgcccaatacatccgatatgatcctcatgtattggttggccagattattgtatcagtcgatcgatcgattccccatggccatgcataatcgattgtccagattcatttctataatttaaataaatctttttgaaacagatcggagtagatattcgtgcctcgctctactacaacatgctgtcctgtcccgtagtacatcgatcgatcaatacttgctagtgatctatcgatatcaatagctaggcagccgacgacgacgtttctgtgtgttgtcccttttactaactaattagcttcttaattaataatttattaatttgcacccactcctcatcgttccatctccatcgatatcatcattaattaacggtgaaaattaatttttcagacaagctagtacagaaactgatgtgatctgatctgatggataaatataagtagagaaacgatcgatcaagacctgcatctgctgcaggcaggggcgagcatctgaatcgatcaaagcaatttgcatatctactacctccgtcccatattacttatctttttgactttttgtttgtcaatgtttgatcattcgtcttattcaaaaaattttaaaattattatttattttgtttgtcatttgctttattatcaaaagtactttacatactacttttttttatatttgcactaatttttcaaataaaatgaatggccaaacattacaaataaaaaatcaaaaacgtctattataggacggagggagtatctatctatatgtctatccgatcgatccccagcactatagcatcagcatcatatcagagcatatatgcatgtatggtccatgcatgcatgatgaatatactcataccctccatcataccgtacgcacagagaatccaattccatcgtctctttatttccacggtgtggtgtataatttttttattacatacatactcgatccgtatttatttaatatagggttgtgttgcgtttttaattttatatatatatatatatatatatatatatatatatatatatatatatataattactccacaagtgcaagtggaatggaatagtgaacaggatcgatcggagcagctacgaaagctacagttacgagtagataagatcactgcagtagtacacatgcaggccacacaagtgaagtgatgacagccagagattaattaactaattaattaactgcattcatgcctagcttggcgagacgaaaacttgtcatgcttgcctcttgtctgctatttggtggcatcaatcaataccgtatatactactcctaggaacgaggactcaacaactgtatgccctccgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagacaaaccatgagtttgaatctggacatgatgagtttgtcttttttgggacagagggagtatattagagtacacgtaatggtaaagtaagttgctctctataaaacatatacatctcaacaatagactagattaatagcaaaccacctcaatagtatgtctacatgggtatctatagctctctaatacattgcctcgtttttctctgtagagtatctccaggttagtagatagttttgctctctctcttcatttaatctctttcaagtaggaaaatatgctgacatggatctcttgtagagagcctatagataaccattacgggtgcccttagagcaggtacaatagcaggctataagccagctgcaaacatattttaagcagataaataaggagaaagaatagcagcgggctacagatttgtagccaactgtagcacggactccaagacgcagtgtgtgtatgacaggtgggactagatattaataatgtagtatataactattgtataaatgagctattagattgactatagatgaattggagttagtagttggctacactattaaacttgctcttagagcaagtttaatagtatagctcactattggctccacttcatctatagccaatccatacaatagttgcttactatactatcaatatatggtcccatctattatacacacattgcgtcttggagtccgtgctgcagctggctacagatctgtagcccactgctcttctctcttatcttttatctcattaaaatatgtttgcagctggttaatagtctttctattgtacctgctattacttcttattaaggttccaactaattaaattgtagtactcctactgtagtggagtaccatattactatatcttaacataccgtgcctaggagataagtgaacaataatgatcgatccccatgtgctcaaaatcaaaatcatgacctaacttcgcgtgaggttttgataaactaattaatattaaccagacctaagcagtgtccactgtatatgtatatgtagatgctggtagattttctctcccatctctacttttttttacttggcttaaataggataatctagtacttattaagcaatacaattcaaatctatttaattatagactcctattctttgggtattttatacttgataatttgctaaagtagctttacggattcatctatttaaacacgatacatgatgtgcgaatttatcatagaattcaaatatattccaactacttttttcaaattaaatttctaaggtatgcagtgtaatagaatcagattcattggataggaagcaatgaatgactcataatcatttgaaagtaaggaaaaaaagagagacgagtccattttacatgtcaactttcgtcaaaataaaaattcatccctaaacttcaaaattggatactatttatcccttagtttttaataccgttttcttttgaaaagtatgtacatcattttttttatattttttctcaatcatttactaacttttataattaatatatattttaacctatttgaatcggtcaaaagatgaaaagtaaatggttgagggatgaataatgtctggttttgaagtttatgaataaatgttagacttgatgaaaattggagatgtaaagggatttttctattaaaagaatatgcgattttgacatgtacaaatggataagctcaggccggcacgtccattgcggtttcaccagagccaatccatcttgcaagattccaatgaaatagaggcatacatggaatatattctggagactgtgaagatttgaagatgttacagataagatgatttgaactatataattccagctacgtaaaaaagctaagacaatgattatatatgagatggtagcatatgtgaaatggtttagtgaatacttaaaactttatttaggtgtttggttagggagagagagagtggcgataattataagggacaattgtttatttgactttgttttgaagcctaactaccaatttgactctattttttctagtttgcttatttgcctgcttttcgaaaatgaacactccgtctgacctgtttctacaacaccgttaagagttcattttaaaaaagaggaaaaataaaaatcacatttcataatgactaaaataccctccaactctatcctcatctaacccttttctctcccggtctctctctctctatcatatcccttctctctccggcgagggagctgtggcggggaaggtaagcggcagagccggctggtggagggagggaccaccggcggcaacggcgggccatggagggaggggatccacgccggcgccaacttgcggagggagggcggctatgccgacgtggatcagcggcagcgccggctgatggagaggggagcaccggcggcggcggggggccgtggagggatgggatccacttcggtgtcaactcgcggtgggagggcggctgcgccgagcacggatccacggctgtgccgctggtggagggagggagcaccggcggcggcggccggccgtggaggaaggggatccgcgccgccgtcaacttgtagagg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| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071759.1 RefSeq:Os11g0102200]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 11]]
| |
| − | [[Category:Chromosome 11]]
| |
