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| − | {{JaponicaGene|
| + | The rice gene Os12g0270200 was reported as '''''OGR1''''' in 2009<ref name="ref1" /> by researchers from Korea. |
| − | GeneName = Os12g0270200|
| |
| − | Description = The start codon is not identified.|
| |
| − | Version = NM_001073079.2 GI:297612996 GeneID:4351952|
| |
| − | Length = 4802 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os12g0270200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os12g0270200 <=> OGR1, OsOGR1 |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
| + | * '''''OGR1''''' encodes a pentatricopeptide repeat protein containing the DYW motif. |
| − | AP = Chromosome 12:9776811..9781612|
| + | * '''''OGR1''''' is essential for RNA editing in rice mitochondria and is required for normal growth and |
| − | CDS = 9780200..9780628|
| + | development. |
| − | GCID = <gbrowseImage1>
| + | ===Mutation=== |
| − | name=NC_008405:9776811..9781612
| + | * '''''opaque and growth retardation 1 (ogr1)''''' mutants that are defective in seven specific |
| − | source=RiceChromosome12
| + | RNA editing sites on five mitochondrial transcripts. Their various phenotypes include delayed seed |
| − | preset=GeneLocation
| + | germination, retarded growth, dwarfism and sterility. Mutant seeds from heterozygous plants are opaque. |
| − | </gbrowseImage1>|
| + | ===Expression === |
| − | GSID = <gbrowseImage2>
| + | * Ectopic expression of '''''OGR1''''' in the mutant complements the altered phenotypes. |
| − | name=NC_008405:9776811..9781612
| + | |
| − | source=RiceChromosome12
| + | ===Sublocalization=== |
| − | preset=GeneLocation
| + | * The '''''OGR1–sGFP''''' fusion protein is localized to mitochondria. |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>acaggcatgatatcctacaaaattgctgctcatgctgctgatttggcaaagtgccatccgtatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctgtatctggatcctgtgaccactatgtctttccatgatgaaacattaccatcggagggtgccaaagtagcacatttctgctcaatgtgtggcccaaagtcttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacaggatagtggaggaagcggtaataccaggaatgaatgctatgagtgctgagtttttggctgcaaggaaaacgatcagtggggagcaacacggtgaagctggaggggagatctatgttccagaaagctatacagctcgcaaataa</cdnaseq>|
| + | ===Evolution=== |
| − | AA = <aaseq>TGMISYKIAAHAADLAKCHPYAQAWDDTLSKARFEFRWLDQFAL YLDPVTTMSFHDETLPSEGAKVAHFCSMCGPKSCSMKITEDIRKYADEHGYRIVEEAV IPGMNAMSAEFLAARKTISGEQHGEAGGEIYVPESYTARK</aaseq>|
| + | |
| − | DNA = <dnaseqindica>3390..3818#gactatactaggtgggagtggctctggtcgccgcgccgattaggggtatcccccccccccccccccccccccgcgggcgtccatgtcggtgtcggcggcggcgcggcatctggaatccctcctcccgcgcctggcctccctccgccactacctgcagttccacgcgcgcctcctcacctcgggccacctcggcgcccacccgggcctccgcgcccgcttcctcgaccgcctcgcgctctcgccgcaccccgccgcgctcccccacgcgctgctcctcctccgctccctccctaccccggccaccaacgacctcaacgccgcgctcagggggctcgccgcctcgccgcacccggcccgctcgctcctcctcctcgcgggccgcctcctccccgccctgctccctcgccccgacgcgctctcgctctccttcgcgctcaaggcgtccgcccgctgctccgacgcgcacaccacggtgcagctccacgcgctcgtcctccgcctcggcgtcgccgccgacgtccggctgctaaccacgctgcttgactcgtacgccaagtgtggagatctcgcgtccgcgcggaaggtgtttgatgaaatgaccgtgcgggacgtggccacatggaactcgctgctggcggggctagcgcaaggcacggagcctaaccttgctctcgcgctgttccacaggctggctaacagcttccaggagttgccgtcgagggaggaacccaatgaggtgactattgttgcggcgctttccgcgtgtgcgcagattggcttgttaaaagatgggatgtatgtgcacgagtttgctaaaagatttggactggatcgcaatgttcgggtctgcaattcactaattgacatgtactccaagtgtggctcgctgtcaagggccctggatgtgttccattccatcaagccggaagaccagacgcttgtgtcctacaatgctgcaattcaggcacattccatgcatgggcatgggggtgatgcactgagattgtttgatgaaatgcccacacgcattgagccagatggagtgacttaccttgctgtgttgtgcgggtgcaaccattctggccttgtggatgatgggctcagggtattcaactcgatgcgagttgctccaaatatgaagcactatggaacaattgtggaccttcttggccgtgcaggccgtctcactgaggcatatgacaccgtcatttctatgccatttccagctgatattgtcctttggcagacattgttgggtgcagccaagatgcatggggttgttgagcttgcggagttggctgccaataaacttgctgagcttggttctaatgtcgatggtgactatgtgctcctatcgaatgtttatgcatccaaggctcggtggatggatgttggtcgagtacgtgataccatgcgaagcaacgatgtgcgaaaagttcctggcttcagctacacagaaatagatggagtaatgcataagtttattaatggtgacaaagagcacccgaggtggcaagagatatacagagcactggaggacattgtatcaagaattagtgagctaggatatgagccagagacaagcaatgtactgcatgacattggggaggaggaaaaacagtatgcattgtgttatcatagtgagaagctggccattgcatttgggttgattgcaacaccacctggggagactcttcgggtgatcaaaaatctccgaatatgtggggactgtcatgtggtggcaaagctcatctctaaagcttatggtcgtgttattgtcattcgggacagggcgagattccatcgatttgaagatgggcagtgttcctgcagggattactggtaaatagtggcatgctggatcatttaaaggataaatttggcatgagctcgtggagatgaggtcaaaaaggatgatataacatgtctctgatccagcatatcgatttgtatggatactggaacatattcttgaaccatgcatatcacttctgacacttcacacaatgggtcaaacatcaaaaggttgttcgagatataatccagggctccaggcttgctgttgcagatacattcaatttagtccccattgaaattaatcttgtaagttagggtgtgggtggtttgaaaatcctccacttagccttcacagagaatgatcttgagaatgaaataccaaatacagtatacacggtttgaggtttccggatggtttctgctgccactggacctcacaaccctacaaaggtttataatcaccaagagtccaggacacaactggatagtcacaatgccgtaggttacaactagcattcagctggtaatggtatggtactaatgaaaaactgacatcaggataggagcatgctatttttcctttcagggagacaacataatttttcatatctacggagcgaagttttccttcaagtctttggttctttgtcccgattccttaatattgtaagttacagtcatggttcagctgttccattccattaatagctgatgatttcattgtcgattttgatgatgcataataagatgcgcctttatatggtttaatctagaatcccttgcaatgatgatactatagtgatgaagtaaacttatcctggattataataaatacaaatttttgccttatctttgtgctatgatcattgatgcatttggcagttttggtcagtaccaacgtggtcgtaaaataatcattgcatgatattttccacacataattttgtttgcagtggagtttgggctatctggttctgtgtgaaattattgggttttcaaaaacatttcattgagcgatgtcatgtagcttcctcacaaggatttgtcacttttgcaacagtggaaggccacgacgcaggtgaaactagcaaaaaaaaaagatggacgagctccgggccttgtttcttgccagactttgtcttctacacgcggcaagagatacaggatgtggacggagaaaaagatgctggacgcgcaggtgaggtctgctcttggttttttaagcaactgcatctatgttaactttgatggtcaaagttagtcatgtctcacttagaacaaatctaaaatgacaataagtttgaaacagagggaatgttttacataatcttacaattaattattacatggtctaaaggaaaaaacacattgaattattgaaaaccaagtgtaagcttaaccggtgttgtaaataatgatcccttagatacaactttcgtttatattgaagccgatttatgcacgggagaatgtttgatgctgccaacattggggccattggtgctgccaacattggggctcttggcactgcacttctctgttatgtaacaccaaaggagcaccttggattgcctaaccgtgatgatgtttagacaggcatgatatcctacaaaattgctgctcatgctgctgatttggcaaagtgccatccgtatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctgtatctggatcctgtgaccactatgtctttccatgatgaaacattaccatcggagggtgccaaagtagcacatttctgctcaatgtgtggcccaaagtcttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacaggatagtggaggaagcggtaataccaggaatgaatgctatgagtgctgagtttttggctgcaaggaaaacgatcagtggggagcaacacggtgaagctggaggggagatctatgttccagaaagctatacagctcgcaaataaggttggtctttttcttatgatgtatagttcaacttgtgggagatgtttggactcttttgttctgaatgtgtagggttgtttactcggtatgaagtaattagtcatctgggagtaaaatggtctagtgccatatttcaatcagttttacataaataagccattagtgtgtgcttaccgtcttgaaacagcgtcagcttgttgttggcccaataacttcatacatgctagtactagttatttagcattagtgcaacttgttacaaatatttctgaattatctggactataaataaatactactcgagtactatctaccatttggtaaacattctgctaatccttttatgtcagaattgtttcataaatctatgagaactgttgtaattttgactccacacattctcttcagtgatatttcttaagggaaaattactctcacagcaatcctttgaaatgggtttgcttgtacatttgaaatttgacactaactgtaatagcagtggatagctgctctgtctttatcaacttctacttgtaatttcagggaccttaataaacctttagtggcttggacttattgtgcattactgcaaaggcactaacttttatatcactataacatgttctcggaactcagaatacaatctctgtgcagatcatcttggcgtccatctactccgggtgataaagatttactgactggagcgtttatcagcagcactcaccatcctatgttagggaggtggtaagcagtttatgtgctttgataaagctggtgttgcttagctcagtttctcctaacccatccacttttcgagcttgtatgctactccttttagtattgtcaaaatcttgtttcgacatgaagtgaaaagttgtgtgaaaagatcagtaggatcttgttcgaacctgttggcgatcagcctttgaaccccaaggtgttcgacgaaatacaaaatcaaaagagagcattttgcaccgcgt</dnaseqindica>|
| + | You can also add sub-section(s) at will. |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073079.2 RefSeq:Os12g0270200]|
| + | ==Labs working on this gene== |
| − | }}
| + | * Department of Integrative Bioscience and Biotechnology, National Research Laboratory of Plant Functional Genomics and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Republic of Korea |
| − | [[Category:Genes]] | + | ==References== |
| − | [[Category:Japonica mRNA]]
| + | <references> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica Genes]] | + | Kim SR, Yang JI, Moon S, Ryu CH, An K, Kim KM, Yim J, An G. Rice OGR1 encodes |
| − | [[Category:Japonica Chromosome 12]]
| + | a pentatricopeptide repeat-DYW protein and is essential for RNA editing in |
| − | [[Category:Chromosome 12]]
| + | mitochondria. Plant J. 2009 Sep;59(5):738-49. doi: |
| | + | 10.1111/j.1365-313X.2009.03909.x. PubMed PMID: 19453459. |
| | + | |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
