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| − | {{JaponicaGene|
| + | The rice gene Os11g0687800 was reported as '''''Pik1''''' in 2011<ref name="ref1" /> by researchers from China. |
| − | GeneName = Os11g0687800|
| |
| − | Description = Disease resistance protein family protein|
| |
| − | Version = NM_001075015.1 GI:115486678 GeneID:4351148|
| |
| − | Length = 6344 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os11g0687800, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os11g0687800 <=> Pik1, OsPik1 |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
| + | * Both '''''Pik-1''''' and '''''Pik-2''''' encode coiled-coil nucleotide binding site leucine-rich repeat (NBS-LRR) proteins, and each shares a very high level of protein identity with corresponding proteins encoded by the '''''Pik-m''''' and '''''Pik-p''''' alleles. |
| − | AP = Chromosome 11:29727301..29733644|
| + | * A combination of '''''Pik-1''''' and '''''Pik-2''''' is required for the expression of Pik resistance. |
| − | CDS = 29728084..29728883,29730995..29731640|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Expression === |
| − | name=NC_008404:29727301..29733644 | + | * Real-time RT-PCR analysis was used to characterize the expression of '''''Pik-1''''' and '''''Pik-2''''' in plants challenged by the Pik-avirulent blast isolate CHL381. Both were constitutively expressed, although at a low level. Following inoculation, the level of transcript for both genes declined further up to 12 h post-inoculation, thereafter increasing marginally to the steady-state level by 72 h post-inoculation. As a similar expression profile was also observed using a mock inoculation, it is possible that both genes were responding to abiotic stress. |
| − | source=RiceChromosome11
| + | ===Evolution=== |
| − | preset=GeneLocation
| + | [[File:Os11g0687800-1.png|center|thumb|400px|'''Fig. 7 Phylogeny of the Pik family, including rice and sorghum sequences sharing > 30% identity at the peptide level.''' '' <ref name="ref1" />.'']] |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008404:29727301..29733644
| + | ==Labs working on this gene== |
| − | source=RiceChromosome11
| + | *Laboratory of Plant Resistance and Genetics, College of Resources and Environmental Sciences, South China Agricultural University, Guangzhou, 510642, China; |
| − | preset=GeneLocation
| + | *Rice Research Institute, Guangdong Provincial Academy of Agricultural Sciences, Guangzhou, 510640, China |
| − | </gbrowseImage2>| | + | ==References== |
| − | CDNA = <cdnaseq>atgtctgaagcgatagcccttgcgatgtcaaagattgaaacctgtgtagagactggagcttcattcaacaacgcaatgtccaagctatctaaaaaggataaggttgtgaaggaattgctggaaaagatcaaacaaatacaggagcaattggatatcaccaatgatttcatccaaaatcacataggcacagccaaccttggtgacccattagatgagagttggattgccacagtgaggaggctggccttcattgttgaggatgtaatggagaagtacttgtattatgctcatcaactgcaggaagaggggtcacagaagcaccctgtcaaaaggtcaagctatgtcgatgttttcaaaaaagttggtcagttgatggacaagataaataatcgcattgggcaccttttaagcatcagagagcagagtaagcttgcaccgcagcttgttcctcactcaccataccccgattcagagggccaaccggagctcattggtaccaatggcccaattaatgtactactgaaatttctgaagcatggtgaggacggagctgtgctgcaactcaaggttctatctatgcttggaattggtggaattggtaaaaccgcacttgcatccaaggtgtatcgaatgcttcgagaagaatttcagagccatgcttttgtgacagtgtccaagatgcctgatatgacaagggtcttatttgatatattggaccaaattggcctgcggaagtatccagctagtttgaacgagaatcaagtcattactcaaattggacaagacctaaaggataagagctatctcattgtaattgatgatttatgggatatgcaacattggaagactatcaaggatgccttgcctgatgtcaattgtggtagcagattgatagttataactcgtctaaacaacatagccaaaacatgtagctctggccagaataatttgacgtataaggtcatgcctcttgctcaccatgactccagaacattgtttctcaaggaaattttgggccatgagggcagttgcttggatgcaccagtttttgatgaaattttgaaaatgtttggtggtatgccttcagcactaaaatgtattggctcatttctgcgcaacaaatcagtcacaactgagtctcagaagatcaatatgagttctttgtattctgaacttgagaattttcctagctggaagaaattgaaaattgctcttttcctcagttgctgtggtccttcccaaactctggaggcttgctcgttgtacttaagtacattaccagacaatcataagatcgagagagatattttgactaggaaatggatttctgaaggaattatccttaaagatgatgagcttagtattaacggagtggtgaataattgctttgaggaactaatcaataggaatgtgattcagcaagtggacaatagttttggggagtaa</cdnaseq>|
| + | <references> |
| − | AA = <aaseq>MSEAIALAMSKIETCVETGASFNNAMSKLSKKDKVVKELLEKIK QIQEQLDITNDFIQNHIGTANLGDPLDESWIATVRRLAFIVEDVMEKYLYYAHQLQEE GSQKHPVKRSSYVDVFKKVGQLMDKINNRIGHLLSIREQSKLAPQLVPHSPYPDSEGQ PELIGTNGPINVLLKFLKHGEDGAVLQLKVLSMLGIGGIGKTALASKVYRMLREEFQS HAFVTVSKMPDMTRVLFDILDQIGLRKYPASLNENQVITQIGQDLKDKSYLIVIDDLW DMQHWKTIKDALPDVNCGSRLIVITRLNNIAKTCSSGQNNLTYKVMPLAHHDSRTLFL KEILGHEGSCLDAPVFDEILKMFGGMPSALKCIGSFLRNKSVTTESQKINMSSLYSEL ENFPSWKKLKIALFLSCCGPSQTLEACSLYLSTLPDNHKIERDILTRKWISEGIILKD DELSINGVVNNCFEELINRNVIQQVDNSFGE</aaseq>|
| + | * <ref name="ref1"> |
| − | DNA = <dnaseqindica>784..1583#3695..4340#gttcgcacttggcaggtggcagcagcaatcctctcttgctagccatctcttgcaaccggcacttcccccctgcgagtccacgagatctgctatcgcatcatcaggtgcgcaagtaagcatccatccttttcctctaattaatcagggtccctacattaagatccccaatccccaatcttgttcgtcagggattttttttttttttggcgtctcacactcgcttgggcgtttttctcgcattttgatcatagtgtattgcttccgtttggtggatttcttgctgctctaaacctcaatttgttaaaatcatactcttcatgtttaccacccgtttgctgtcgctctaagttaggagccatcgcgccctgctcgccggcagtgatggagtaagaacgaatttatttaattcatgggatttgggacaaatttctttgggaactatgatttcagacgataaatttcacaccatatggatccggggggatagttttcagacaagattcaggttaggttatcaggtccacgggtgcctttcgaacaggcttcagatttcagttaagtaaaatggagatttacggtgtctcaagatttgctttactaatgcgcgcaaaagttcagcttgtttttgtgatccggatattttgtttcgactactacatatgtggatgagtacttttcaacattttcctgttccactgcatatttcaatgacaattttttgtttgttacttgtttggtgcagagcagactaactagcagccacactgagaaagagtgcacaagatgtctgaagcgatagcccttgcgatgtcaaagattgaaacctgtgtagagactggagcttcattcaacaacgcaatgtccaagctatctaaaaaggataaggttgtgaaggaattgctggaaaagatcaaacaaatacaggagcaattggatatcaccaatgatttcatccaaaatcacataggcacagccaaccttggtgacccattagatgagagttggattgccacagtgaggaggctggccttcattgttgaggatgtaatggagaagtacttgtattatgctcatcaactgcaggaagaggggtcacagaagcaccctgtcaaaaggtcaagctatgtcgatgttttcaaaaaagttggtcagttgatggacaagataaataatcgcattgggcaccttttaagcatcagagagcagagtaagcttgcaccgcagcttgttcctcactcaccataccccgattcagagggccaaccggagctcattggtaccaatggcccaattaatgtactactgaaatttctgaagcatggtgaggacggagctgtgctgcaactcaaggttctatctatgcttggaattggtggaattggtaaaaccgcacttgcatccaaggtgtatcgaatgcttcgagaagaatttcagagccatgcttttgtgacagtgtccaagatgcctgatatgacaagggtcttatttgatatattggaccaaattggcctgcggaagtatccagctagtttgaacgagaatcaagtcattactcaaattggacaagacctaaaggataagaggtataaacatttattaaaattaatatcatttgataatttggcctgtcctttttctcacaagacctgcctgaaaattactgcatgccttgtatttgtttatgttttctgttcaaccttattatttcttatgaaattgattatatgagatttcgcatgataaaaatgaggttatataacaaccaatatgcatctttagttgctaattagttttattattttcctgggccagcggaagctggccaaagtatattaagataggaagggtgttagttcgatcattacaacaaacaactcagccaggaaagctggcacaacctctagcatggctcaccttacagattatacccgctaagccagcctattaagattatctccggacaaggtgagtagtcctgtggcctgccaagtgccgcattcatctacaatggcggcgtagagctcttgcatggagaccaccaaccaacttatgggaataacaccaccattattgaaaatcaagcgttggtggagaagagtggccaattagttcaataacaagaaagctatcaactggcatcccgccccaccacatgcctgaaagaaaaaaaaaggatccccacacggtatcgaagaaggaggcgagatgcagagcgaatggcatcaacgtcgacgctggagcccccgttgcagtcgtacggccgtcgagcctccatgcggtcgtgtgccgcctcctccgcctctccctccccctccccctcctccacagcctcatctaatgctgccccgacactgatgatgagggagaggacttgttgcttctggttggccccacctgcagtagcgacagcatggaagcttaggttaggaggtcggcggaggcatagagatgttgtcttccatccataggttaatcgacctgaccacaaaacatcttttctctttcttgttcttggctttcttgaaggaggaggaaggggataaatttagggaggaattgtttggtggtgaagagaagaagatgaattggtgagttgaagtaggagagagagagagggagaggcaaggtatagtatgatacctaagaaccagcctgataacgtcggtatcaggcctgataccaccggatattgggtgatacctatgtggtatcatctgatactgcgcaaatatcaactgatgcctcataggtataacctgataccgacaagtattagaatgtgatatctacctggtatcatcctgtccagacgggatcccatgatatagcagccccattcaataattcatacaagtccagaggtctcaaaggcccatttgtgcaccgtactctaattggtctatgtacttatagaatacgaagactgtagggcaacctgggaggaactaaggctataggataccaaggagaaataaagaccttaggagttaggacatcttggtggaaccaagtatcgatgtaactaagaataataaacacccatatctgagtcaaactggataacttgagtaatggattggtggggttttacacccaccccacacctttcataatttcctaggcactattcctcctatatttgatcacatattcataattaacaaaacttcaagaaaaaagttctagtgatgatccctgaatttgtatttagtgatggcttgtttcctaaaagtgagaattaactagtggtttctctattgtttttgtagtttgtcacttagggttatttgtgcttctaaatactccctccatccataaaagttagacatattgcacatttgagtttttccaaataagttgttcctatttgtagtctttatgcatttaagacttaaatgaagagataaattaaatgtttgttgagaacccaaggagtcatctaaatactcattggttgcatgcttgcattcactccttgattttgtaacatccaagatgatttaatttctccttgctcttgatgacaaaagtaatatgtgtaacttttgtggatggagggagtaccttttgtccaaattgtatgctaatgctttctgctcttgctgactggctgtgtcaacttctaccaagcttccttcttacttcttgtgctaagtttaatacagttgttcctcttttggggtggtattgacagctatctcattgtaattgatgatttatgggatatgcaacattggaagactatcaaggatgccttgcctgatgtcaattgtggtagcagattgatagttataactcgtctaaacaacatagccaaaacatgtagctctggccagaataatttgacgtataaggtcatgcctcttgctcaccatgactccagaacattgtttctcaaggaaattttgggccatgagggcagttgcttggatgcaccagtttttgatgaaattttgaaaatgtttggtggtatgccttcagcactaaaatgtattggctcatttctgcgcaacaaatcagtcacaactgagtctcagaagatcaatatgagttctttgtattctgaacttgagaattttcctagctggaagaaattgaaaattgctcttttcctcagttgctgtggtccttcccaaactctggaggcttgctcgttgtacttaagtacattaccagacaatcataagatcgagagagatattttgactaggaaatggatttctgaaggaattatccttaaagatgatgagcttagtattaacggagtggtgaataattgctttgaggaactaatcaataggaatgtgattcagcaagtggacaatagttttggggagtaaacctatgaaatccaatttctgatgcaccacattcttaggcagatagcacgagaaaggaattttgctaccttcctatcggaaaatattttgatatcatgcaaggagcctatccatcgcctctcatttcactgttctaagttaagaatttcgattgataaaggtgatattcagattatttcggattcaggagattcaaatcaaaaacctaagagtctatcgcttgctcgctccataactctatgtggttatgcaaagccagtttcttttaagcttttggagcacctgcacgtgttagatctggaaggttgctggaatgtggacaactctactttggatgatatatgccgcatgatcctgctgcagtacttaagtctcaagaaaacacgaataactgtgctacctccacagattgagaatctaagatgtctcaagacactggctgtaacccaaactggaatcgcagaactcccactgcaaattgggaagttgcctgatttggagactctggatgtaaggcatacacaggtcaaagagataccgaaggaacttgttcaacttcctaaattggtgtgtttgctttttggtcaaagtggttttcacggtggagttaagttccctgtgggaggtaatccttcaaagtcactaaaggtgctgggttccatcgattcaacacaatgctcagcaagtttcatgggggagcttagtagtttgacagggctgacgaagctttcagtagtgtgctatgacgggaccaaggacatggagtggaatcttcgtatgatgaattctatgttcaaatttagcaatcttgaatccctgacaatttatggtgatttcattttgggcaacgaagttcctgcactccagaatcctcctaaacttcagaagttgaagttggccggaagatgtttgagtgttcctggttggattgataaattcagcgatgttacccttctagatatcagggtttgcagcctagaagagagtgatatgaagatactttgcaagatgagctccctgcagagacttgtgttaacacaggttcacatgccaataaaacaactagaaatcacaaaggaagcaagtttcagcaaactaaatggtttcacatttgattgccgtgtgccttgggtaacctttaaagaagaagctatgccaagtctgcaatacctcgaactgaagctttatgctggcccagcgggtaaaattccttcaggtattacatgcctaccatgtctcacaaaggttatcctccggtacttggtacattaccaaagcagtgctagtgtacaggatacaatttctaaaatgagaaaagaaagcagtgagcatcccaatatgatcgtgctttctcaaaatggtgagcatgagattttcccacaaaatgctgtttctcgaaatggcgaactcgagattgtcccggtcaatgctgttgatggcatgcatcaggattagcacaggcaaaaattgaagaacaatattgtcattgttaacgccctatctgactgcattctactgccgttgttctctggtatgaaaaagttgtctatattaattgtaactatatgtaataatggtttctaatgtgcatatatattaattctatttgtattgcctgtagcaggtgggttataaggactggtatattaacttgcatcgtacaaacggcaaattaatcctcattctcgtgccagacatagttgtggagcagacgggcaaatcagatcctattggaattacaatccttctatgactcaagccaaccaaatcaatcaagatagaagccaaattaagttgaaaaatatttgctagggattgcaattcgcagcagtgaggagcgcaagtaacaatcaggtagtactttgataatttggtttctctaaagttccgcatgtattagtatgtattgaattggaattaatgtgtccctgttcacattgatatctaatatatcacgatttctcaatgattgaatcacaataaattatatatatcttttgttcg</dnaseqindica>|
| + | Zhai C, Lin F, Dong Z, He X, Yuan B, Zeng X, Wang L, Pan Q. The isolation and |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001075015.1 RefSeq:Os11g0687800]|
| + | characterization of Pik, a rice blast resistance gene which emerged after rice |
| − | }}
| + | domestication. New Phytol. 2011 Jan;189(1):321-34. doi: |
| − | [[Category:Genes]] | + | 10.1111/j.1469-8137.2010.03462.x. PubMed PMID: 21118257. |
| − | [[Category:Japonica mRNA]]
| + | |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | </references> |
| − | [[Category:Japonica Chromosome 11]] | + | |
| − | [[Category:Chromosome 11]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 11]] |
