Difference between revisions of "Os04g0477300"

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Please input one-sentence summary here.
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The rice gene Os04g0477300 was reported as '''''BET1''''' in 2011<ref name="ref1" /> by researchers from Japan.
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os04g0477300 <=> BET1, ONAC081, ONAC81, NAC81
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===Function===
 
===Function===
Please input function information here.
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* '''''BORON EXCESS TOLERANT1''''' is a gene responsible for tolerance to boron (B) toxicity in rice (Oryza sativa).
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* '''''BET1''''' gene encodes a NAC (NAM, ATAF, and CUC)-like transcription factor and the function of the transcript is abolished in B-toxicity-tolerant cultivars.
  
===Expression===
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===Expression ===
Please input expression information here.
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* Quantitative RT-PCR analysis revealed that '''''BET1''''' gene was expressed mainly in the roots and the expression level was less in the shoots in 7-d-old seedlings.
  
 
===Evolution===
 
===Evolution===
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
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==Labs working on this gene==
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* Laboratory of Plant Nutrition, Division of Applied Life Sciences (K.O., T.M.) and Laboratory of Breeding, Division of Applied Biologies (Y.O.), Graduate School of Agriculture, Kyoto University, Kyoto 606–8502, Japan;
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* Department of Biological Resources Management, School of Environmental Science, University of Shiga Prefecture, Hikone 522–8533, Japan (A.S);
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* Laboratory of Plant Nutrition and Fertilizers, Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113–8657, Japan (T.F.)
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==References==
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<references>
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* <ref name="ref1">
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Ochiai K, Shimizu A, Okumoto Y, Fujiwara T, Matoh T. Suppression of a NAC-like
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transcription factor gene improves boron-toxicity tolerance in rice. Plant
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Physiol. 2011 Jul;156(3):1457-63. doi: 10.1104/pp.110.171470. PubMed PMID:
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21543724; PubMed Central PMCID: PMC3135931.
  
==Labs working on this gene==
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</ref>
Please input related labs here.
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</references>
  
==References==
 
Please input cited references here.
 
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]
GeneName = Os04g0477300|
 
Description = No apical meristem (NAM) protein domain containing protein|
 
Version = NM_001187055.1 GI:297723240 GeneID:9269895|
 
Length = 2334 bp|
 
Definition = Oryza sativa Japonica Group Os04g0477300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
 
AP = Chromosome 4:24284133..24286466|
 
CDS = 24285178..24285350,24285446..24285632,24286154..24286324|
 
GCID = <gbrowseImage1>
 
name=NC_008397:24284133..24286466
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008397:24284133..24286466
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>acatgtctcacttctgccttttactgcaggccatggattatagctggtggaaaggtaattgctacaaaaataagaaatgcaactcagcttctgagttgtaaacttggagaattggttccagaagcatggagggaatgcccaaactgcaaatgtcacattgataatagcgatgttactttacagtggccagaattccctgacggtgttaaatttgatccatctgatcttgaagtacttgaacatttagaaagaaaaattaacctgggaaatccagggcctcagggtcttattgatcacttcatcccaactctagaaaaggtggaaggaatctgctatacacatcctgaaaatctccccggtatcaagctggacggcaccagcagccatttcttccacagaatatcaaacgcatatggttctggtcagcgcaagcgtagaaagataagccacaccggccatgctgcttctgacgagaacataagatggcacaaaactggaaaatccaacagatttaccataacggtgtcttaa</cdnaseq>|
 
AA = <aaseq>TCLTSAFYCRPWIIAGGKVIATKIRNATQLLSCKLGELVPEAWR                    ECPNCKCHIDNSDVTLQWPEFPDGVKFDPSDLEVLEHLERKINLGNPGPQGLIDHFIP                    TLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKRRKISHTGHAASDENI                    RWHKTGKSNRFTITVS</aaseq>|
 
DNA = <dnaseqindica>1117..1289#835..1021#143..313#tatgtagaagaagtctttccatatctgtaacttagcacaattatactatgttaagctgattaaccttaaaatctgaactttttggtgaatgacaaggcgatagattgtccttgagataagttgggactttttgttatgatgaacatgtctcacttctgccttttactgcaggccatggattatagctggtggaaaggtaattgctacaaaaataagaaatgcaactcagcttctgagttgtaaacttggagaattggttccagaagcatggagggaatgcccaaactgcaaatgtcacattgataatagcgatgtaagttcagctacctattgtacttatgaatgcttgatttaactttttagttcagttgtctgatactctgatgatgttttgccattaaagtttcgtgtgtagaaaatcaacactagacaacattacttccaaagagcgatgctctggtgctctctactggtagtattatactatcagtctactggtagtattatactaccggtatattgggggtaaattagtaatttactaatactatgattaggagtaactattatttatgttttttttccggctaaatcgatttatgatcattcattattcactaaaaaaggtgttttgctcattactgtgctgtgtgctacactttattcctattgtcctggctcccacgtgtcacaatttcaatataaaatccacaaagcttgtggctcccttgccttgggtatgacgaggttggctttaagcagaaatatcagtagggtaagtttcacattttctatgcatttcttgttggtgctaaataaaaaatctcattgcaggttactttacagtggccagaattccctgacggtgttaaatttgatccatctgatcttgaagtacttgaacatttagaaagaaaaattaacctgggaaatccagggcctcagggtcttattgatcacttcatcccaactctagaaaaggtggaaggaatctgctatacacatcctgaaaatctccccggtactggattatatattttaagttgttatcaggccttttgaactagtagtaattagttagctcatgtgtcatacattcctctgtaattctgtcaggtatcaagctggacggcaccagcagccatttcttccacagaatatcaaacgcatatggttctggtcagcgcaagcgtagaaagataagccacaccggccatgctgcttctgacgagaacataagatggcacaaaactggaaaatccaacagatttaccataacggtgtcttaaaaggatggaagaaaatactggttctttacaaaggctccaaaaagaacaagatagtacaagctaattgggttatgcatcaatataatcttggtgtggaagaaggcggggaggacggagagcttgttgtttccaaggtattctaccaattatcctccaagcaaactggcacgcctgaaatggactctgttactgaagaagcatctgatgcactgaccataagaagtgatcccattacacccataacgaaccctccgctgcctcgctgcctgatgaacagcccgtgtgacacggagcagaatggcaccatttcacatgatcaggtaagccatgctactgataatgaggatagggcaaacaaattaattgctctttctttttttctttttttttgacaatacttcatgctgttgcattgctgaattttacacaggagggggaatgcagcacatccactctccggcccatggtagaagctggaaaccgtgcagggtgttctgctggagcgtcaacagccggggacttcaacgaagatctgctgcagcgctgcgagtttccggaggaccccgtcccaactcttgatgacacgctgccttttctttacacggacgaaacggaccttttcagctgggaagtaagtgtgctttgctcgtaatactcctttctttttctgacttatattttgttacggttaagaacaaaatctgatttgcctttcctgaattgaatttcttgcaataggattttcaattcgggtcgcaggaaagcttcggctgggtggatggggatcacacgtaagtgatgctctgaggagttgtgggaagcagcggtgctgcaggaagacgccttcagggtttagggtctagggttcgccactctagtgagctgcaacactcttttagagctgcagcgctttttataagagtgacgaaatttggagtggtcaacccttcatataactgatctccgaaaattttgtatatggatttgcgtattaacaccagctctatgtagccgagcagtaagtatagtagtctctcttccccgt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187055.1 RefSeq:Os04g0477300]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 4]]
 
[[Category:Chromosome 4]]
 

Latest revision as of 01:59, 13 December 2016

The rice gene Os04g0477300 was reported as BET1 in 2011[1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os04g0477300 <=> BET1, ONAC081, ONAC81, NAC81

Function

  • BORON EXCESS TOLERANT1 is a gene responsible for tolerance to boron (B) toxicity in rice (Oryza sativa).
  • BET1 gene encodes a NAC (NAM, ATAF, and CUC)-like transcription factor and the function of the transcript is abolished in B-toxicity-tolerant cultivars.

Expression

  •  Quantitative RT-PCR analysis revealed that BET1 gene was expressed mainly in the roots and the expression level was less in the shoots in 7-d-old seedlings.

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Laboratory of Plant Nutrition, Division of Applied Life Sciences (K.O., T.M.) and Laboratory of Breeding, Division of Applied Biologies (Y.O.), Graduate School of Agriculture, Kyoto University, Kyoto 606–8502, Japan;
  • Department of Biological Resources Management, School of Environmental Science, University of Shiga Prefecture, Hikone 522–8533, Japan (A.S);
  • Laboratory of Plant Nutrition and Fertilizers, Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113–8657, Japan (T.F.)

References

  1. Ochiai K, Shimizu A, Okumoto Y, Fujiwara T, Matoh T. Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice. Plant Physiol. 2011 Jul;156(3):1457-63. doi: 10.1104/pp.110.171470. PubMed PMID: 21543724; PubMed Central PMCID: PMC3135931.


Structured Information