Difference between revisions of "Os04g0477300"

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(Created page with "{{JaponicaGene| GeneName = Os04g0477300| Description = No apical meristem (NAM) protein domain containing protein| Version = NM_001187055.1 GI:297723240 GeneID:9269895| Le...")
 
 
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{{JaponicaGene|
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The rice gene Os04g0477300 was reported as '''''BET1''''' in 2011<ref name="ref1" /> by researchers from Japan.
GeneName = Os04g0477300|
 
Description = No apical meristem (NAM) protein domain containing protein|
 
Version = NM_001187055.1 GI:297723240 GeneID:9269895|
 
Length = 2334 bp|
 
Definition = Oryza sativa Japonica Group Os04g0477300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os04g0477300 <=> BET1, ONAC081, ONAC81, NAC81
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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* '''''BORON EXCESS TOLERANT1''''' is a gene responsible for tolerance to boron (B) toxicity in rice (Oryza sativa).
AP = Chromosome 4:24284133..24286466|
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* '''''BET1''''' gene encodes a NAC (NAM, ATAF, and CUC)-like transcription factor and the function of the transcript is abolished in B-toxicity-tolerant cultivars.
CDS = 24285178..24285350,24285446..24285632,24286154..24286324|
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GCID = <gbrowseImage1>
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===Expression ===
name=NC_008397:24284133..24286466
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* Quantitative RT-PCR analysis revealed that '''''BET1''''' gene was expressed mainly in the roots and the expression level was less in the shoots in 7-d-old seedlings.
source=RiceChromosome04
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preset=GeneLocation
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===Evolution===
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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You can also add sub-section(s) at will.
name=NC_008397:24284133..24286466
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==Labs working on this gene==
source=RiceChromosome04
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* Laboratory of Plant Nutrition, Division of Applied Life Sciences (K.O., T.M.) and Laboratory of Breeding, Division of Applied Biologies (Y.O.), Graduate School of Agriculture, Kyoto University, Kyoto 606–8502, Japan;
preset=GeneLocation
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* Department of Biological Resources Management, School of Environmental Science, University of Shiga Prefecture, Hikone 522–8533, Japan (A.S);
</gbrowseImage2>|
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* Laboratory of Plant Nutrition and Fertilizers, Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113–8657, Japan (T.F.)
CDNA = <cdnaseq>acatgtctcacttctgccttttactgcaggccatggattatagctggtggaaaggtaattgctacaaaaataagaaatgcaactcagcttctgagttgtaaacttggagaattggttccagaagcatggagggaatgcccaaactgcaaatgtcacattgataatagcgatgttactttacagtggccagaattccctgacggtgttaaatttgatccatctgatcttgaagtacttgaacatttagaaagaaaaattaacctgggaaatccagggcctcagggtcttattgatcacttcatcccaactctagaaaaggtggaaggaatctgctatacacatcctgaaaatctccccggtatcaagctggacggcaccagcagccatttcttccacagaatatcaaacgcatatggttctggtcagcgcaagcgtagaaagataagccacaccggccatgctgcttctgacgagaacataagatggcacaaaactggaaaatccaacagatttaccataacggtgtcttaa</cdnaseq>|
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==References==
AA = <aaseq>TCLTSAFYCRPWIIAGGKVIATKIRNATQLLSCKLGELVPEAWR                    ECPNCKCHIDNSDVTLQWPEFPDGVKFDPSDLEVLEHLERKINLGNPGPQGLIDHFIP                    TLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKRRKISHTGHAASDENI                    RWHKTGKSNRFTITVS</aaseq>|
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<references>
DNA = <dnaseqindica>1117..1289#835..1021#143..313#tatgtagaagaagtctttccatatctgtaacttagcacaattatactatgttaagctgattaaccttaaaatctgaactttttggtgaatgacaaggcgatagattgtccttgagataagttgggactttttgttatgatgaacatgtctcacttctgccttttactgcaggccatggattatagctggtggaaaggtaattgctacaaaaataagaaatgcaactcagcttctgagttgtaaacttggagaattggttccagaagcatggagggaatgcccaaactgcaaatgtcacattgataatagcgatgtaagttcagctacctattgtacttatgaatgcttgatttaactttttagttcagttgtctgatactctgatgatgttttgccattaaagtttcgtgtgtagaaaatcaacactagacaacattacttccaaagagcgatgctctggtgctctctactggtagtattatactatcagtctactggtagtattatactaccggtatattgggggtaaattagtaatttactaatactatgattaggagtaactattatttatgttttttttccggctaaatcgatttatgatcattcattattcactaaaaaaggtgttttgctcattactgtgctgtgtgctacactttattcctattgtcctggctcccacgtgtcacaatttcaatataaaatccacaaagcttgtggctcccttgccttgggtatgacgaggttggctttaagcagaaatatcagtagggtaagtttcacattttctatgcatttcttgttggtgctaaataaaaaatctcattgcaggttactttacagtggccagaattccctgacggtgttaaatttgatccatctgatcttgaagtacttgaacatttagaaagaaaaattaacctgggaaatccagggcctcagggtcttattgatcacttcatcccaactctagaaaaggtggaaggaatctgctatacacatcctgaaaatctccccggtactggattatatattttaagttgttatcaggccttttgaactagtagtaattagttagctcatgtgtcatacattcctctgtaattctgtcaggtatcaagctggacggcaccagcagccatttcttccacagaatatcaaacgcatatggttctggtcagcgcaagcgtagaaagataagccacaccggccatgctgcttctgacgagaacataagatggcacaaaactggaaaatccaacagatttaccataacggtgtcttaaaaggatggaagaaaatactggttctttacaaaggctccaaaaagaacaagatagtacaagctaattgggttatgcatcaatataatcttggtgtggaagaaggcggggaggacggagagcttgttgtttccaaggtattctaccaattatcctccaagcaaactggcacgcctgaaatggactctgttactgaagaagcatctgatgcactgaccataagaagtgatcccattacacccataacgaaccctccgctgcctcgctgcctgatgaacagcccgtgtgacacggagcagaatggcaccatttcacatgatcaggtaagccatgctactgataatgaggatagggcaaacaaattaattgctctttctttttttctttttttttgacaatacttcatgctgttgcattgctgaattttacacaggagggggaatgcagcacatccactctccggcccatggtagaagctggaaaccgtgcagggtgttctgctggagcgtcaacagccggggacttcaacgaagatctgctgcagcgctgcgagtttccggaggaccccgtcccaactcttgatgacacgctgccttttctttacacggacgaaacggaccttttcagctgggaagtaagtgtgctttgctcgtaatactcctttctttttctgacttatattttgttacggttaagaacaaaatctgatttgcctttcctgaattgaatttcttgcaataggattttcaattcgggtcgcaggaaagcttcggctgggtggatggggatcacacgtaagtgatgctctgaggagttgtgggaagcagcggtgctgcaggaagacgccttcagggtttagggtctagggttcgccactctagtgagctgcaacactcttttagagctgcagcgctttttataagagtgacgaaatttggagtggtcaacccttcatataactgatctccgaaaattttgtatatggatttgcgtattaacaccagctctatgtagccgagcagtaagtatagtagtctctcttccccgt</dnaseqindica>|
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* <ref name="ref1">
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187055.1 RefSeq:Os04g0477300]|
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Ochiai K, Shimizu A, Okumoto Y, Fujiwara T, Matoh T. Suppression of a NAC-like
}}
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transcription factor gene improves boron-toxicity tolerance in rice. Plant
[[Category:Genes]]
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Physiol. 2011 Jul;156(3):1457-63. doi: 10.1104/pp.110.171470. PubMed PMID:
[[Category:Japonica mRNA]]
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21543724; PubMed Central PMCID: PMC3135931.
[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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</ref>
[[Category:Japonica Chromosome 4]]
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</references>
[[Category:Chromosome 4]]
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 +
 
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==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Latest revision as of 01:59, 13 December 2016

The rice gene Os04g0477300 was reported as BET1 in 2011[1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os04g0477300 <=> BET1, ONAC081, ONAC81, NAC81

Function

  • BORON EXCESS TOLERANT1 is a gene responsible for tolerance to boron (B) toxicity in rice (Oryza sativa).
  • BET1 gene encodes a NAC (NAM, ATAF, and CUC)-like transcription factor and the function of the transcript is abolished in B-toxicity-tolerant cultivars.

Expression

  •  Quantitative RT-PCR analysis revealed that BET1 gene was expressed mainly in the roots and the expression level was less in the shoots in 7-d-old seedlings.

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Laboratory of Plant Nutrition, Division of Applied Life Sciences (K.O., T.M.) and Laboratory of Breeding, Division of Applied Biologies (Y.O.), Graduate School of Agriculture, Kyoto University, Kyoto 606–8502, Japan;
  • Department of Biological Resources Management, School of Environmental Science, University of Shiga Prefecture, Hikone 522–8533, Japan (A.S);
  • Laboratory of Plant Nutrition and Fertilizers, Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113–8657, Japan (T.F.)

References

  1. Ochiai K, Shimizu A, Okumoto Y, Fujiwara T, Matoh T. Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice. Plant Physiol. 2011 Jul;156(3):1457-63. doi: 10.1104/pp.110.171470. PubMed PMID: 21543724; PubMed Central PMCID: PMC3135931.


Structured Information