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| − | {{JaponicaGene|
| + | The rice '''Os02g0167700''' was reported as ''' Oscand1''' in 2011 <ref name="ref1" /> by researchers from the China. |
| − | GeneName = Os02g0167700|
| + | <br> |
| − | Description = Armadillo-like helical domain containing protein|
| + | ==Annotated Information== |
| − | Version = NM_001052543.1 GI:115444456 GeneID:4328423|
| + | ===Gene Symbol=== |
| − | Length = 10025 bp|
| + | *'''Os02g0167700 <=> Oscand1''' |
| − | Definition = Oryza sativa Japonica Group Os02g0167700, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *'''OsCAND1''' is involved in auxin signaling to maintain the G2/M cell cycle transition in crown root meristem and, consequently, the emergence of crown root. |
| | + | <br> |
| | + | ===Expression=== |
| | + | *The expression of '''OsCAND1''' is confined to the root cap after the establishment of fundamental organization. The transgenic plants harboring DR5::GUS showed that auxin signaling in crown root tip is abnormal in the mutant. Exogenous auxin application can partially rescue the defect of crown root development in '''Oscand1'''. |
| | + | <br> |
| | + | ===Mutant=== |
| | + | *The defect of visible crown root in the '''Oscand1''' mutant is the result of cessation of the G2/M cell cycle transition in the crown root meristem. Map-based cloning revealed that '''OsCAND1''' is a homolog of Arabidopsis CAND1. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou, 310058, P.R. China |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Sutton Bonington, LE12 5RD, UK |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | <br> |
| − | |
| + | ==References== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | <references> |
| − | AP = Chromosome 2:3659296..3669320|
| + | <ref name="ref1"> |
| − | CDS = 3659564..3659660,3659923..3660061,3660161..3660238,3660486..3660654,3660757..3660873<br>,3660956..3661102,3661203..3661388,3661472..3661720,3662196..3662432<br>,3662511..3662673,3662748..3662866,3662976..3663068,3663595..3663735<br>,3663813..3663896,3663974..3664084,3664162..3664260,3664337..3664438<br>,3664501..3664585,3664742..3664824,3664908..3664958,3665152..3665275<br>,3665357..3665514,3665595..3665709,3665931..3666060,3666163..3666328<br>,3667650..3667857,3668270..3668439,3668542..3668577|
| + | OsCAND1 Is Required for Crown Root Emergence in Rice |
| − | GCID = <gbrowseImage1>
| + | </ref> |
| − | name=NC_008395:3659296..3669320
| + | |
| − | source=RiceChromosome02
| + | </references> |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage1>| | + | ==Structured Information== |
| − | GSID = <gbrowseImage2>
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | name=NC_008395:3659296..3669320 | |
| − | source=RiceChromosome02
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atggcaaacatgaacataaccaccatcttggagaagatgacagggaaagataaggactacagatatatggcaacttcagatttgcttagcgaattgaacaaagagggcttcaaagctgaccaagacatcgagccaaagttgactactaccgttcttcaacaactggaagatgcttcaggagatgtctctggtttagctgttaaatgcttggctccacttgtcaagaaggttggtgaggatagggtggtggagatgaccaacattctttgtgataagttactcaatggaaaggaccaacatcgagacactgctagtattgctctgaagacaatcattgtggaagttacgacaacatcacttgctgaaaagattttggtgtctcttgccccacagctaatcaagggcgccactgctggaaaaagtgcggaagtgaaatgcgagtgccttgatatattgggggatgtacttcatagatttggcaacttgatcacaaaagatcatgatagtatgctcactgccttgttatcccagttgagctctaaccaagcaagtgttaggaaaaagtctatttcttgcattgcatcacttgctgcatgtctgtctgatgatttattagccaaggcaacttttgaggttgtccagttgcttaaaaatagaagtgcaaagtctgaaattgcccgaacaaatatccagatgattggcgctctaagtcgctcggttggataccgttttgggccacaccttgctgaagctgttcctttgctcataaactattgtacaagtgcatcggaaaatgatgaagagctccgtgaatacagcttgcaggccctcgagagttttatgctgaggtgtccaagagatatatctccatattgtgagggtattttaaatcttgcattggaatatataagctatgatccaaatttcactgatagcatggaggaggacactgatgatgaggctcaggatgaggaagatgatgatgagagcgcaaatgaatacacagatgatgaggatgcaagctggaaagtccggagggcttcagcaaagtgcttatctgcaattatagtatctcgtcctgaaatgttgtctaagatgtatctggaggcttgtccaaagttaatcgaacggtttagggaaagagaggaaaatgtaaagatggacatctttaacacatttattgagttgttacgccaaactggtaacatgacaaaaggacaaggtgacattgatgagtctagccctagatggttgctgaaacaagaagtacctaaggttgtcaaatccatcaataggcagttgcgtgaaaaatcaatcaagacaaaggttggagcattctctgtattgaaggagcttgttgttgtactgccagactgtcttgctgatcatattgggtcacttgttcctgggattgagaaggctttgaatgataagtcatctacctccaacctgaagattgaagcccttgtatttacaagacttgttatggcttcacattccccagctgtgtttcatccatacatacaggccctttctggcccaatattgtctgctattggagacagatattacaaagtcaccgctgaggctttaagagtctgcggagagctagttcgtgtacttcgtccaaattttgaggcacgcactctagattacaggccatatattggtccaatctataaggctatcttggcccgcttggcaaatcaggatcaggatcaggaagttaaagagtgtgccatatcttgcatgagccttgtggtattcacgtttggtgatggtctccaaagggaactgccggcatgccttcccattcttgttgatagaatgggtaatgaaataactagacttacagcagttaaggcgtttgcagtgattgctaaatcacctcttcgcattgatctttcgtgtgtcctagaccatgtcatttctgagctcacggctttccttcgaaaggcaaacagagctctaaggcaggctacattgggaacactaaattctcttgttgttgcgtatggtggtcaaattggatcctcttatgaaactattattgctgaactttctacgctcattagtgacatggatttgcacatgactgctcttgcgctggaactttgttgcacgatcatggtcgatagaaaatccatccaaaatgttggtcttgcagtgaggtacaaggttttgccccaggcccttattttgatcaggagtgctctcttgcaagggcaggcactacaggcactgcagagattttttgcttcactggtccagtctgcaaatacaagctttgacactttgttggattctcttatttctactgctaaaccatcgcagtcaggtggacttgccaaacaagcattgtcttccattgcacagtgtgttgctgtgttgtgcttagcagctggggatcagaagtgtgcctcaactattgaaatgcttaaaggcattttaaaagatgacagcactactaattctgctaaacagcacatggccttgttatgtttgggagaaattggaagaaggaaggacctcagcaatcatgctcaaattgagaatattgtcattgagtcatttcagtcaccttttgaggagatcaaatctgcagcgtcatatgctctcggaaacattgctgttggaaatttatcgaagtatttgccttttatcttgaatcagattgacaaccaacagaagaaacagtatctattgcttcattcactgaaagaggtaattgcacggcagtctgttgaccatactggccagagtgagctccaggattcaaacattgagaagattttggcattgctctttaatcactgtgaaagtgaggaggaaggagttcggaatgtagttgcagaatgcttaggcaaaattgctctgattgaacctaggaaattaatccctgctctaaaggaacgcacatctagtcctgctgcaaacacaagagctacagttgccattgctataaaatattcaattgttgaacggcctggaaaaatagatgaaattatgtactccgagatttctaccttcctgatgttgattaaagacagtgacaggcacgtgaggcgtgcagctgtgctggccttgagtacagctgcccacaacaagccaaatttgattaagggtcttcttcctgaattattgcctcttttgtatgaccaaactgttgttaagcaagaattgatcagaacagttgaccttgggcctttcaagcatgttgtggacgatggtcttgaactcaggaaagctgcctttgaatgtgtggatacattgctggatagctgtcttgatcaagtgaacccatcatcatttatcgttcctttcctcttatctggtttaggtgatcattatgatgtaaaaatgccttgccatctgattctctcaaagctagcagacaagtgcccttctgctgttctggcagttttggactcattagttgaccccattgagaaaactataaatcacaaacccaagggcgatgcagtgaagcaagaggttgatcgcaatgaagacatgattcgaagtgctcttcgagcaatcgctgctctaagccgcataagtggtaatgattacagcatgaggttcaagaatctgatgaacaagataatggcctcacctccgcttgctgacaagtacaactcggtgcgcagcgagtaa</cdnaseq>|
| |
| − | AA = <aaseq>MANMNITTILEKMTGKDKDYRYMATSDLLSELNKEGFKADQDIE PKLTTTVLQQLEDASGDVSGLAVKCLAPLVKKVGEDRVVEMTNILCDKLLNGKDQHRD TASIALKTIIVEVTTTSLAEKILVSLAPQLIKGATAGKSAEVKCECLDILGDVLHRFG NLITKDHDSMLTALLSQLSSNQASVRKKSISCIASLAACLSDDLLAKATFEVVQLLKN RSAKSEIARTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELREYSLQA LESFMLRCPRDISPYCEGILNLALEYISYDPNFTDSMEEDTDDEAQDEEDDDESANEY TDDEDASWKVRRASAKCLSAIIVSRPEMLSKMYLEACPKLIERFREREENVKMDIFNT FIELLRQTGNMTKGQGDIDESSPRWLLKQEVPKVVKSINRQLREKSIKTKVGAFSVLK ELVVVLPDCLADHIGSLVPGIEKALNDKSSTSNLKIEALVFTRLVMASHSPAVFHPYI QALSGPILSAIGDRYYKVTAEALRVCGELVRVLRPNFEARTLDYRPYIGPIYKAILAR LANQDQDQEVKECAISCMSLVVFTFGDGLQRELPACLPILVDRMGNEITRLTAVKAFA VIAKSPLRIDLSCVLDHVISELTAFLRKANRALRQATLGTLNSLVVAYGGQIGSSYET IIAELSTLISDMDLHMTALALELCCTIMVDRKSIQNVGLAVRYKVLPQALILIRSALL QGQALQALQRFFASLVQSANTSFDTLLDSLISTAKPSQSGGLAKQALSSIAQCVAVLC LAAGDQKCASTIEMLKGILKDDSTTNSAKQHMALLCLGEIGRRKDLSNHAQIENIVIE SFQSPFEEIKSAASYALGNIAVGNLSKYLPFILNQIDNQQKKQYLLLHSLKEVIARQS VDHTGQSELQDSNIEKILALLFNHCESEEEGVRNVVAECLGKIALIEPRKLIPALKER TSSPAANTRATVAIAIKYSIVERPGKIDEIMYSEISTFLMLIKDSDRHVRRAAVLALS TAAHNKPNLIKGLLPELLPLLYDQTVVKQELIRTVDLGPFKHVVDDGLELRKAAFECV DTLLDSCLDQVNPSSFIVPFLLSGLGDHYDVKMPCHLILSKLADKCPSAVLAVLDSLV DPIEKTINHKPKGDAVKQEVDRNEDMIRSALRAIAALSRISGNDYSMRFKNLMNKIMA SPPLADKYNSVRSE</aaseq>|
| |
| − | DNA = <dnaseqindica>9661..9757#9260..9398#9083..9160#8667..8835#8448..8564#8219..8365#7933..8118#7601..7849#6889..7125#6648..6810#6455..6573#6253..6345#5586..5726#5425..5508#5237..5347#5061..5159#4883..4984#4736..4820#4497..4579#4363..4413#4046..4169#3807..3964#3612..3726#3261..3390#2993..3158#1464..1671#882..1051#744..779#aatcccccatcggcgtcagggccgtgacggcaaaaaatacagcgagctctccaagccctagccgccgcccgcccgcctccccttcccgacccctcgccgccggcgagccggccgcgtggagtcgcccccccgccgcggttcccgccgtccgctacgttgtctcgggccccggagtgctgggatcgcgccgcgtgctggactcactggactggactggagacgccgccctccgctcgactagcccccaccccccaccggcgtcgtcgtcgtcgtcaagggctcaccatcgctaggttggtacctccggttggttggttggtttgtttcgctgcttcgactggttttctgcaggcgtgatgtggttctagggctttgaacccgaggtgcccgatccgaatgattcgctcgtggcgttaggttttcggttctgtatcgccgtagatctagcagggaggaggatcttctgattttccgaagtgggggtagaatagagcacaccacaccatcacgcccacctcctttttaaaggagcgaggaactgaggattctcactgtgatcgtgaactggagtttggcagtggatgagttttgcatctgtgccagcatgcaaacactcaacaatgtgcgctgttcaccttgccagtaatggaacttaatctcattatacttgatttttgttatttccagcagggcaacagtgattagttccgcggaaaaggacttttggatacggtttagctaaaatggcaaacatgaacataaccaccatcttggagaaggtatgggtttcactgatctgcatgtgaactgtaaacctgaattttgctctttatttttctatgatttgatcttaacatccgttgtgtaaaattttctttcagatgacagggaaagataaggactacagatatatggcaacttcagatttgcttagcgaattgaacaaagagggcttcaaagctgaccaagacatcgagccaaagttgactactaccgttcttcaacaactggaagatgcttcaggagatgtctctggtttagctgttaaatggtatgcattaattgctttctccctttattgagagcggtatcgtctgattagcattttgttttgttaatggtgatcatccgctccttattgcaagaaatcactgtcatttggatctcgctacttttgtaatttatgttagttgcagttgctattgttaaggatttgtactgcctcattcaattttctggactaatatagggcattgattattacagtagatgttttttttttctgtatatatctctaactgctgtttttttcactgcaacttcatgcctcaattattgcatccattgaagcacatttagtatagcaatttgatacccaattgttctgttatgttttccacattccggtgttctgcacttcatggtttgctatgttaatctgtattattacttctcttggttagcttggctccacttgtcaagaaggttggtgaggatagggtggtggagatgaccaacattctttgtgataagttactcaatggaaaggaccaacatcgagacactgctagtattgctctgaagacaatcattgtggaagttacgacaacatcacttgctgaaaagattttggtgtctcttgccccacagctaatcaagggcgccactgctgtaagttctcaattcgtctcctaattgtggtaaaacatgcttccatattaatcttgcggcgggtgccattcgaaccatatagtttgtatttgctattacaataatggttgtcaagtcgtaaagtcgagtcgaggtacccctggaccgacttggtcgactagtccatgacttggtcatgcaaaaaacaggggatgcaatatataatctttactactattatactgtgctaagaaatgtatggagtataaactatggactatggagtagcaaagcaagacaataggtcaacaagaaataaaactaaagtactaaacacaataagccaattagcatggtgaattggtgatttgctacgactaatcacgactaatttacgaccgactttatgactaatctacgactaaccacgacttaccacgactaatcgcacgacttgctgtttggtcgagtcgtggctctttagtcgactagcttgactgactttacgactaatctatgactaatcacgattagtcgggcgacttgataacagtgattacaattgaaagtttcagcctgctaattaagtttacagcgtttctgatggtgcattatacttttgaggtataccaaagaacacatttgcaaaccttgtaactatgtatttatttttacctccctattcatccagtctggttaggtgttcagccatgtttgcttgccatattcaattgaagtcattatatgctggcttcacaacttcagaattatgttagcagcacagagagccaaaaagaaattgtgttttaacatttgtttttagtttgagagccatgatagtaagtgccatggtacagtaccttccgctactgcagaaagttggatagttttccagaccagtcaatatttttagatttttctagccaccataaatttcaaaccgcaattttagctactgcagcaaatacaatgcaaatgataaaccatgagcaatcttttctttggataaattaattaggaaactgtgctacccttcctaacacatgatagattttagctgcaaatctggcaatgatgctgaccatgcacagtccatgaggttttatctgtcaatttctagctatccacataactataagaacacattagctttcacctatgcgtctttaccttaaaaaaacaagagcggtttattgaattgcctttgccagcacatcatgtttaacacctgcctataatagataaaccaatatatggattttggggcttagtagcatatacttggttttgtcataccatgggatgtcttgggtaggtttgataactcttcttttgttgacagggaaaaagtgcggaagtgaaatgcgagtgccttgatatattgggggatgtacttcatagatttggcaacttgatcacaaaagatcatgatagtatgctcactgccttgttatcccagttgagctctaaccaagcaagtgttaggaaaaagtctatttcttgcattggtaagtcgaactgatgtgctgtgctgttatatgttggttttttgggtggcttgaatttgtaaaggtgtttacactgactgttaacatgctatttttcttcagcatcacttgctgcatgtctgtctgatgatttattagccaaggcaacttttgaggttgtccagttgcttaaaaatagaagtgcaaagtctgaaattgcccgaacaaatatccagatgattggcgctctaaggtatatactttggctttcaactgtacatgtatgccttgagtagttcttttaaggaacagggcacactcatttgttcgcaatagcttagatgaaatcatgttcacgcttcaaacttatctagccagttgaaatccagatatttactattttttggcgatttagtggttcttatctggtgtgcggcaatccaagttttgattcaatattattttcatttacagtcgctcggttggataccgttttgggccacaccttgctgaagctgttcctttgctcataaactattgtacaagtgcatcggaaaatgatgaagagctccgtgaatacagcttgcaggtgaacaattttcttctttccaatgttacatgaaacgagtgttctcttgtatgactcctgtgggtttttccataatgtaggccctcgagagttttatgctgaggtgtccaagagatatatctccatattgtgagggtattttaaatcttgcattggaatatataagctatgatccaaatttcactgatagcatggaggaggacactgatgatgaggctcaggatgaggaagatgatgagtacgtaattgatgctcttacagtaatagataaatagcatctgtttacttgatcaaaatatgttttcgatattttctccagtgagagcgcaaatgaatacacagatgatgaggatgcaagctggaaagtccggagggcttcagcaaagtgcttatctgcaattatagtatctcgtcctgaaatgttgtctaagatgtatctggaggtatattgacataatcatgttaaaccaacatatgatcatctgaaaaatgttctgtttgatggcatgtttaaatttctcccatgtttcggatagtgtttctgtaatgatttttaccagttagtaatgtgacccattagctaataatgagtgtcccatttaacttcgatgtttttcttttttaaaaaatatgcaggcttgtccaaagttaatcgaacggtttagggaaagagaggaaaatgtaaaggtaattgctttgtatcaataatttgtcagtctctgagttttctttctgtttgtcaatctgatgaagcttctatatgattctagatggacatctttaacacatttattgagttgttacgccaaactggtaacatgacaaaaggacaaggtgacattgatgagtctaggcaagtctattgtgctcttatgtgcatcattattttcaacttctccaagttatagcatcttatgcagtttattggtgaaatacttttacatgcttgaagttg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gttcaagaatctgatgaacaagataatggcctcacctccgcttgctgacaagtacaactcggtgcgcagcgagtaagagctgatctttttgtatatggtagaaaatagttggagccgacttggtatatgtgccactgcctattctgaggtgaagattcaacccagcattgccctatatttttctggtggagctagtccgaaacactgaacgatacagctgagactaagaggtggtttgaaaatttgcgaacacaaatggctggttggaagctagactttttttttttgtcttgtacaaagtatggcggcaattcactagattcagtaaagttggattatatttt</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052543.1 RefSeq:Os02g0167700]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 2]] | |
| − | [[Category:Chromosome 2]]
| |
