Difference between revisions of "Os01g0633500"

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Please input one-sentence summary here.
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The rice gene Os01g0633500 was reported as '''''Rd''''' in 2006<ref name="ref1" /> by researchers from Japan.
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os01g0633500 <=> Rd, DFR, OsDFR, OS-DFR
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===Function===
 
===Function===
Please input function information here.
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[[File:Os01g0633500-1.png|right|thumb|200px|'''Figure 1. Metabolic pathways for the synthesis of pro-anthocyanidins and anthocyanins.''' '' <ref name="ref1" />.'']]
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* '''''Rd''''' encodes dihydroflavonol-4-reductase (DFR).
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* Red coloration in rice grains is determined by the complementary effect of two genes, '''''Rc''''' and '''''Rd''''', and each of these genes is inherited monogenetically. '''''Rc''''' gene is responsible for the accumulation of pigments in the pericarp of brown-colored grains. Furthermore, red rice grains require the '''''Rd''''' gene to increase the content of the pigment.
  
===Expression===
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===Mutation===
Please input expression information here.
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* The Rc and Rd genes are involved in the red pigmentation in rice grains, Rc and rd are involved in the brown pigmentation in rice grains, and either rc and rd or rc and Rd produce ordinary white rice grains (Figure 3).
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[[File:Os01g0633500-2.png|center|thumb|400px|'''Figure 3. Phenotypes and genotypes of Rc and Rd.''' '' <ref name="ref1" />.'']]
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===Expression ===
  
 
===Evolution===
 
===Evolution===
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*Genetic Diversity Department, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan,
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*Department of Biological Science and Technology, Tokyo University of Science, Noda, Chiba 278-8510, Japan,
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*Research Institute for Biresources, Okayama University, Kurashiki, Okayama 710-0046, Japan,
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*National Agricultural Research Center for Kyushu Okinawa Region, National Agriculture and Bio-oriented Research Organization, Nishigoshi, Kikuchi, Kumamoto 861-1192, Japan,
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*National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan, and
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*Plant Breeding Laboratory, Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589, Japan
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==References==
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<references>
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* <ref name="ref1">
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Furukawa T, Maekawa M, Oki T, Suda I, Iida S, Shimada H, Takamure I, Kadowaki
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K. The Rc and Rd genes are involved in proanthocyanidin synthesis in rice
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pericarp. Plant J. 2007 Jan;49(1):91-102. PubMed PMID: 17163879.
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</ref>
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</references>
  
==References==
 
Please input cited references here.
 
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]
GeneName = Os01g0633500|
 
Description = Similar to NADPH-dependent reductase A1 (Fragment)|
 
Version = NM_001050192.1 GI:115438754 GeneID:4326597|
 
Length = 1964 bp|
 
Definition = Oryza sativa Japonica Group Os01g0633500, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
 
AP = Chromosome 1:27039560..27041523|
 
CDS = 27039901..27040261,27040649..27041259|
 
GCID = <gbrowseImage1>
 
name=NC_008394:27039560..27041523
 
source=RiceChromosome01
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008394:27039560..27041523
 
source=RiceChromosome01
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>cgttgggaagacgaagccgttgctggagctggcggggtagaaggagaggctgacgctgtggaaggccgacctgggcgaggaaggcagcttcgacgcggcgatcaggggttgcacgggcgtgttccacgtcgcgacgcccatggacttcgagtccgaggacccggagaacgaggtggtcaagcccaccgtggaagggatgctgagcatcatgcgggcctgcagggacgccggcaccgtcaagcgcatcgtcttcacctcctccgccgggaccgtcaacatcgaggagcggcagcgcccctcctacgaccacgacgactggagcgacatcgacttctgccgccgcgtcaagatgaccggatggatgtacttcgtgtccaagtcattggcggagaaggccgccatggaatacgcgagggagcacgggctggacctcatcagcgtcatccccacgctcgtcgtcgggcccttcatcagcaacgggatgccgccgagccacgtcaccgcgctggcgctgctcacggggaacgaggcccactactcgatcctgaagcaggtgcagttcgtccacctcgacgacctctgcgacgccgagatcttcctcttcgagagccccgaggcgcgcggccgctacgtctgctcctcccacgacgccaccatccacggcctcgcgacgatgctcgcggacatgttcccggagtacgacgtgccgcggagctttcccgggatcgacgccgaccacctccagccggtgcacttctcgtcgtggaagctcctcgcccacgggttcaggttcaggtacacgctggaggacatgttcgaggccgccgtccggacgtgcagggagaaggggcttctcccgccgctgccgccaccgccgacgacggccgtggccggaggagacggctcggcgggtgtggccggcgagaaggaaccgatactggggagggggaccgggacggcggttggtgctga</cdnaseq>|
 
AA = <aaseq>RWEDEAVAGAGGVEGEADAVEGRPGRGRQLRRGDQGLHGRVPRR                    DAHGLRVRGPGERGGQAHRGRDAEHHAGLQGRRHRQAHRLHLLRRDRQHRGAAAPLLR                    PRRLERHRLLPPRQDDRMDVLRVQVIGGEGRHGIREGARAGPHQRHPHARRRALHQQR                    DAAEPRHRAGAAHGERGPLLDPEAGAVRPPRRPLRRRDLPLREPRGARPLRLLLPRRH                    HPRPRDDARGHVPGVRRAAELSRDRRRPPPAGALLVVEAPRPRVQVQVHAGGHVRGRR                    PDVQGEGASPAAAATADDGRGRRRRLGGCGRREGTDTGEGDRDGGWC</aaseq>|
 
DNA = <dnaseqindica>342..702#1090..1700#tgcgaatccaacacaagcaccgcggcgtagtactactacttgcgcgcgcgtgttagattcgcgtgcgaatccaacacaagcagatcgatcacgcacggtacgccatgggcgaggcggtgaaggggccagtggtggtgacgggcgcgtcgggcttcgtcggctcatggctcgtcatgaagctcctccaggccggctacaccgtccgcgccacagtgcgcgacccctgtgagctctctcatcgtgcactctagctctctcctcgtagtttactgactccaattatatatgccgcttgcttgactctgacaagtgtacgtgttgttgttgttgttttcagctaacgttgggaagacgaagccgttgctggagctggcggggtagaaggagaggctgacgctgtggaaggccgacctgggcgaggaaggcagcttcgacgcggcgatcaggggttgcacgggcgtgttccacgtcgcgacgcccatggacttcgagtccgaggacccggagaacgaggtggtcaagcccaccgtggaagggatgctgagcatcatgcgggcctgcagggacgccggcaccgtcaagcgcatcgtcttcacctcctccgccgggaccgtcaacatcgaggagcggcagcgcccctcctacgaccacgacgactggagcgacatcgacttctgccgccgcgtcaagatgaccggatgggtatgtatcgaaaatgttgtcgtgggttaggaacaacgatcctccacgtacataaaacgaaacgataagttaacatgagcatgattaatattagtatggtataattgatatttgtttaaaaatctaaaaaatattaatatgatttttaaataactattttatagaattttttttatgaaaacacaaggaaacagaaattgagaaatagtacgttcaaactcacccttaagcaactgaaactagcttagcacgtgaatttggccgtgtgagtcatatgatatgaaggtcggggatgttttttttttttttgcggggatgtaattaactaattatgtaaaccatttctattgtctaaaagaagttagcaagtgataattgtggtggcagatgtacttcgtgtccaagtcattggcggagaaggccgccatggaatacgcgagggagcacgggctggacctcatcagcgtcatccccacgctcgtcgtcgggcccttcatcagcaacgggatgccgccgagccacgtcaccgcgctggcgctgctcacggggaacgaggcccactactcgatcctgaagcaggtgcagttcgtccacctcgacgacctctgcgacgccgagatcttcctcttcgagagccccgaggcgcgcggccgctacgtctgctcctcccacgacgccaccatccacggcctcgcgacgatgctcgcggacatgttcccggagtacgacgtgccgcggagctttcccgggatcgacgccgaccacctccagccggtgcacttctcgtcgtggaagctcctcgcccacgggttcaggttcaggtacacgctggaggacatgttcgaggccgccgtccggacgtgcagggagaaggggcttctcccgccgctgccgccaccgccgacgacggccgtggccggaggagacggctcggcgggtgtggccggcgagaaggaaccgatactggggagggggaccgggacggcggttggtgctgaaacagaagcgttggtcaaatgagtgttgactagtgagtccagagaacggtattgaaattgatcgtgtttcgctgctccttgcctcgttggcttcgtctatttcacaatgcgagatttggaataaatcagagcggttaatcctgtaagttcatatgtaacgtacccatttgattttttattggttacatatggttactccctccggtttcattttaattgacactttgaacaataatacgttttacaagatatacctttgacttt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050192.1 RefSeq:Os01g0633500]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 1]]
 
[[Category:Chromosome 1]]
 

Latest revision as of 02:43, 13 December 2016

The rice gene Os01g0633500 was reported as Rd in 2006[1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os01g0633500 <=> Rd, DFR, OsDFR, OS-DFR

Function

Figure 1. Metabolic pathways for the synthesis of pro-anthocyanidins and anthocyanins. [1].
  • Rd encodes dihydroflavonol-4-reductase (DFR).
  • Red coloration in rice grains is determined by the complementary effect of two genes, Rc and Rd, and each of these genes is inherited monogenetically. Rc gene is responsible for the accumulation of pigments in the pericarp of brown-colored grains. Furthermore, red rice grains require the Rd gene to increase the content of the pigment.

Mutation

  • The Rc and Rd genes are involved in the red pigmentation in rice grains, Rc and rd are involved in the brown pigmentation in rice grains, and either rc and rd or rc and Rd produce ordinary white rice grains (Figure 3).
Figure 3. Phenotypes and genotypes of Rc and Rd. [1].

Expression

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Genetic Diversity Department, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan,
  • Department of Biological Science and Technology, Tokyo University of Science, Noda, Chiba 278-8510, Japan,
  • Research Institute for Biresources, Okayama University, Kurashiki, Okayama 710-0046, Japan,
  • National Agricultural Research Center for Kyushu Okinawa Region, National Agriculture and Bio-oriented Research Organization, Nishigoshi, Kikuchi, Kumamoto 861-1192, Japan,
  • National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan, and
  • Plant Breeding Laboratory, Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589, Japan

References

  1. 1.0 1.1 1.2 Furukawa T, Maekawa M, Oki T, Suda I, Iida S, Shimada H, Takamure I, Kadowaki K. The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp. Plant J. 2007 Jan;49(1):91-102. PubMed PMID: 17163879.


Structured Information