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| − | {{JaponicaGene|
| + | The rice '''Os02g0121000''' was reported as ''' cde1(t)''' in 2007 <ref name="ref1" /> by researchers from the China. |
| − | GeneName = Os02g0121000|
| + | <br> |
| − | Description = Similar to Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS)|
| + | ==Annotated Information== |
| − | Version = NM_001052249.1 GI:115443868 GeneID:4328118|
| + | ===Gene Symbol=== |
| − | Length = 5542 bp|
| + | *'''Os02g0121000 <=> cde1(t)''' |
| − | Definition = Oryza sativa Japonica Group Os02g0121000, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *OsGluRS gene (TIGR locus Os02 g02860) which encode glutamyl tRNA synthetase was identified as the '''Cde1(t)''' gene. |
| | + | <br> |
| | + | ===Expression=== |
| | + | *A high-resolution physical map of the chromosomal region around the cde1(t) gene was made using F2 and F3 population consisting of 1,858 mutant individuals. Finally, the '''cde1(t)''' gene was mapped in 7.5 kb region between marker ID10 and marker ID11 on chromosome 2. Sequence analysis revealed only one candidate gene, OsGluRS, in the 7.5 kb region. Cloning and sequencing of the target region from the '''cde1(t)''' mutant showed that a missense mutation occurred in the mutant. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *College of Life Sciences, Zhejiang University, 310029 Hangzhou, ZJ, China |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *State Key Laboratory of Rice Biology,China National Rice Research Institute,359 Tiyuchang Road, 310006 Hangzhou, ZJ, China |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | <br> |
| − | |
| + | ==References== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | <references> |
| − | AP = Chromosome 2:1090428..1095969|
| + | <ref name="ref1"> |
| − | CDS = 1090653..1090886,1091205..1091361,1091538..1091638,1091786..1091900,1092940..1093003<br>,1093107..1093209,1093331..1093432,1093542..1093590,1093672..1093790<br>,1093918..1094100,1094378..1094499,1095605..1095959|
| + | Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.) |
| − | GCID = <gbrowseImage1>
| + | </ref> |
| − | name=NC_008395:1090428..1095969
| + | |
| − | source=RiceChromosome02
| + | </references> |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage1>| | + | ==Structured Information== |
| − | GSID = <gbrowseImage2>
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | name=NC_008395:1090428..1095969
| |
| − | source=RiceChromosome02
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atgatggcggcggcaatggggtcgccatggctgcgcatcaggctgctcccggaggtgccgccgcgcctcctgcggccccacctccgccggaccctctccgtccgcgcctccgcctccgcctcggcgtcaccggacggcgccggcggcccggtgcgggtccgcttcgcgccgtcgccgacgggcaacctccacgtcggcggcgcccgcaccgcgctcttcaactacctcttcgcgcggtccaaggggggcaagttcgtgctccgcatcgaggacaccgacctcgagaggtccaccaagaagtccgaggaggccgtgctcagtgacctcgcctggctcggccttgactgggacgaaggtcccgatgttggtggggaatttgggccgtatcgccagtccgagcgcaattcgatgtacaaacagtatgccgagaagctgatggagtctggtgcagtctatcagtgcttttgctccagtgaggaacttgaacagatgaaagaaactgcaaagcagatgcaacttccacctgtatacatgggcaagtgggggactgcttcagatgcagaaatacaacaggagttagagaaggggacaccttacacttaccgtttccgtgtaccgaaggaagggtcgttgaaaattaatgaccttattcgtggtgaggtcagttggaacttagacacgcttggtgatttcgtgattatgagaagcaatggccagccagtgtataacttctgtgtcacagttgatgatgctaccatgcgcatctctcatgttatcagagctgaagaacatctgccaaacacattacggcaggctcttatttataaagcacttggatttccaatgccttcgtttgctcatgtatcacttattctagctcctgatagaagtaaactgtctaaacgtcatggggctacttctgtgggacagtacaaagagatgggctatttgcctcaggcaatggtaaattatttggcacttcttggttggggtgatggtactgaaaatgagttcttcaccattgatgacctagtggaaaaattcactataaatcgtgtcaacaaaagtggagcagtctttgatgctgtaaaattaaaatggatgaatggacaacatctaagatcatttccccctgatgtactcatcaagagttttgaggatagatggaaggacacaggcattctccaggagtctgaaagtggttttgctaaagaagcggctgagcttttgaaggatggcatcgatttgatcactgatgctgacgcagccctttcaaacctgttgtcgtatcccctccatgctacattaagcagtgatgaagctaaatctgtggtgcaagacaagctttctgaggttgcatcaggactcatttctgcttatgatagcggtgaactttgtcaagcactagctgagggccgtgatggttggcagaagtgggtgaaaatttttggcaaatcacttaaaagaaagggaaagtcactctttatgccgctccgtgtactgctgactggcaagcttcatgggcctgacatgggcggcaccgtagtcctcatacacaaagccggcacctgtggagcggtcactcagcaatccggtttcgtaaatctcgacgagaggttcagaatcctgaaggaggtggagtgggagtcactggtacaggagcaagagtccccagctgaaactgccgttcctgcttctcgatag</cdnaseq>|
| |
| − | AA = <aaseq>MMAAAMGSPWLRIRLLPEVPPRLLRPHLRRTLSVRASASASASP DGAGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKKSE EAVLSDLAWLGLDWDEGPDVGGEFGPYRQSERNSMYKQYAEKLMESGAVYQCFCSSEE LEQMKETAKQMQLPPVYMGKWGTASDAEIQQELEKGTPYTYRFRVPKEGSLKINDLIR GEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMRISHVIRAEEHLPNTLRQALIYK ALGFPMPSFAHVSLILAPDRSKLSKRHGATSVGQYKEMGYLPQAMVNYLALLGWGDGT ENEFFTIDDLVEKFTINRVNKSGAVFDAVKLKWMNGQHLRSFPPDVLIKSFEDRWKDT GILQESESGFAKEAAELLKDGIDLITDADAALSNLLSYPLHATLSSDEAKSVVQDKLS EVASGLISAYDSGELCQALAEGRDGWQKWVKIFGKSLKRKGKSLFMPLRVLLTGKLHG PDMGGTVVLIHKAGTCGAVTQQSGFVNLDERFRILKEVEWESLVQEQESPAETAVPAS R</aaseq>|
| |
| − | DNA = <dnaseqindica>5084..5317#4609..4765#4332..4432#4070..4184#2967..3030#2761..2863#2538..2639#2380..2428#2180..2298#1870..2052#1471..1592#11..365#atctccggagatgatggcggcggcaatggggtcgccatggctgcgcatcaggctgctcccggaggtgccgccgcgcctcctgcggccccacctccgccggaccctctccgtccgcgcctccgcctccgcctcggcgtcaccggacggcgccggcggcccggtgcgggtccgcttcgcgccgtcgccgacgggcaacctccacgtcggcggcgcccgcaccgcgctcttcaactacctcttcgcgcggtccaaggggggcaagttcgtgctccgcatcgaggacaccgacctcgagaggtccaccaagaagtccgaggaggccgtgctcagtgacctcgcctggctcggccttgactgggacgaaggtgagttgacccacctgatttctctatatcgctctaatgttttactgcctaggaagttaagttgtactccctccgtttcaaaatgtttgacaccgttgacttttttttacgtgtttcatcattcgtcttattcaaaaaatttaagtaattatttattcttttcatatcatttgattcattgttaaatatagagtaaagtgcacgggcggtccttaaacttgcaggggtatgtcatctaggtctctaaactctcaaaatacatatccaagtccgagaacttgtcatagtgtgttatttaggtcccaaatcgccccagcccctataggatcctacgtggcactgatgtggcatgccacacggacaagacgtggcatcattttgactaacaaatgaaacccatttatctttttcttcttttcttatcttttcctcctcctcttttttttctttcttctccttttttttcttttcccgagtagaagaaaggaaaaaaaaagaagaatgagaagaaaacgaagaaaaaagaagggaaaaaggaagaaaaggacatatcacgtccatatggcatgccatatcagcgccacataggattctataggggctatgtcgatttgggacctaaatgatacactttgacaagttctggaacctagatgtgcattttgagagtttggggacctagatgacacaaccttataagtttaaggaccgcctatgcacttttctcttaaatatactttcatgtacacatatagttttacatatttcataatttttttaataagacgaacggtcaaacatgtgctaaaaagtcaacggtgtcaaacattttgaaacggagggagtatcattttgatgtagtgctctattgctgtccaccgtagttaggccttggatgctgaattctactctactcgagagttctggcaagctcaattcttatgattatctgattgatacaatctgattgcttatctttattgatattgtgcaactgtggagatgtgtatttggttttattaagcatggataaaccagtgaaatagttattctttttcctctatgatggtagatgatatgaatgctcatatttgtacttgcttaggtcccgatgttggtggggaatttgggccgtatcgccagtccgagcgcaattcgatgtacaaacagtatgccgagaagctgatggagtctggtgcagtctatcagtgcttttgctccagtgaggtatatttctccccttgcatgatctgcatgtatgtgtgatgcattgtgttgcgcttatacacaggttgttgtaatgttggagtattattttggtgcttttcaaaaaaaaaagcttgatctttctgtgtgttcatatgaaacactcgtagtgatttattcaactatgaatactaagggatgagttagtttaaaccccgtcagcaatttgtctaggttacttctggaattctactggatcaactatttgcccatttgatagctgtttctgttacttcaggaacttgaacagatgaaagaaactgcaaagcagatgcaacttccacctgtatacatgggcaagtgggggactgcttcagatgcagaaatacaacaggagttagagaaggggacaccttacacttaccgtttccgtgtaccgaaggaagggtcgttgaaaattaatgaccttattcgtggtgaggtaataactagaaactctagcactgccacatcgttgcattttttttagccttccactgtcaataattcatgcttgcaaattatgagaagtgatacacacacactaagcatcggatagttttataaaggtcagttggaacttagacacgcttggtgatttcgtgattatgagaagcaatggccagccagtgtataacttctgtgtcacagttgatgatgctaccatgcgcatctctcatgttatcaggtaatgtaaactaattattttgttatctttccttttgatgatttcttcctgaagtttgcaatcctcttgtttctcccccagagctgaagaacatctgccaaacacattacggcaggctcttatttataaagtaattttctatgccattcttatcttgtgtatcattgtttacaaccttgacccttcgaactgtatgtctcaacataatatgcctactgtcctatgactgtcttctgcaggcacttggatttccaatgccttcgtttgctcatgtatcacttattctagctcctgatagaagtaaactgtctaaacgtcatggggctacttctgtgggacaggtaaccaactagattttggcaaaatatagtattgcagctaattactcgccatttcacatcttttctgaaacactttcaatgttagaaaaatgtaacaatgtgtcctcttttctttggccagtacaaagagatgggctatttgcctcaggcaatggtaaattatttggcacttcttggttggggtgatggtactgaaaatgagttcttcaccattgatgacctaggttagtttatgaataattcgttcagttactttccctgcacagtttttgaaaattacagtcaccatccatttacccattctttgctgttatatctcatttccagtggaaaaattcactataaatcgtgtcaacaaaagtggagcagtctttgatgctgtaaaattaaagtaagatcatttttttttgccaatctccttctggttgagttatcttcatagaatttgtcagtattctctaattactcgtgatatctcagttgcagtactataattagttgaactggagcttgcttccacttattgttatgtttctttagtctgatatcaggcattatttcaattataagggaaccagtgaaaagtcattgtcactactccctctatcgcacgtcaaacacgtcacgatctccaaaaataatcttttgcttataatttctgatatactataaggtttgtagcaacaaaattataaccatatgaaattaaattcaaatgtcaatccaatgataatattcactaataaaattttaattcatattatactaattgttggtatattttagaaggtgaatcttaaaaaccaatctagtactggatatgacacatgctagtactacaaatccggacatatatctgtccagattcgttgtactagaatgtgtccataactctatatgaccaacaaagttaaatgtacagtgtatcaatggatttgttttttttgggatggaggaagtagctagtaattcataggttcttttatttatgaactcagacacaagctgggaagcatgtccagtccataactccatatgaccaacaaagttaaatgtacagtgtatcaatggatttgatatactgtatggagttcgcaaaatcactccacattatggatcaaagagaaacataagtctgataagcaataaatgcagtgtgtctaatcagtaataaatacgtatttatgtactttgctgcctgctggtcagtagtgtttgaaaggcgcattccatcatgataaagcttgtttactgggacctaccctcagaaaccaccatcaagctcaaacctactgatattttgttggcctatctaatccaccgttgcctttaagaagtgcatgtgcacacaactactcacttgaactggtgatcatggaaaataaacaaacaatcctatttacataatgcattactttttatatttgtagatggatgaatggacaacatctaagatcatttccccctgatgtactcatcaagagttttgaggatagatggaaggacacaggcattctccaggagtctgaaagtggttttgctaaagtaagattggaggccttttgttatttctacacaccatgggtgtttgtactttggaactacacactaaaaagaattaggtatatatgctaaatggacggtaactgattggggagcactaataacataattactttattttttgcacaggaagcggctgagcttttgaaggatggcatcgatttgatcactgatgctgacgcagccctttcaaacctgttgtcgtatcccctccatgctacattaagcaggtctgcagaaatgtgatgttttaaatttaatccctcgggaacccttcattaatctttcactgaaagtcccttcataaattgtcgccaaaaaaggaaagtttcttcagtgaattggttgttgtggtagtactgttggagtaaacagttcgtttttctgttcacatgtaaattaccagtgatgaagctaaatctgtggtgcaagacaagctttctgaggttgcatcaggactcatttctgcttatgatagcggtgaactttgtcaagcactagctgagggccgtgatggttggcagaagtgggtgaaaatttttggcaaatcacttaaaagaaaggtcagtgctaatgagtaatgacagcaatcattttgttcttttgttcttaggtgccgctcaaacacaactttttatggaagcaatctgtctcacctaaaccttgatatctagaaatgatgaaaatacaaccgaatcatttgatctagactttgacaacccaaccctagtaagcttcctttgttttgacttgtatatactaaccatcatattcaccttaaaatcacattcaagcccattgttgcaaatgccttttgtgccatatatcctgaatggaacaattataacttacctcttctggctgtatccatttgtgaccagggaaagtcactctttatgccgctccgtgtactgctgactggcaagcttcatgggcctgacatgggcggcaccgtagtcctcatacacaaagccggcacctgtggagcggtcactcagcaatccggtttcgtaaatctcgacgagaggttcagaatcctgaaggaggtggagtgggagtcactggtacaggagcaagagtccccagctgaaactgccgttcctgcttctcgataggctgcaagattcagatcaatcagggagagtttttgttttctgtaatactccactataaagcataggatatgttccattttactacccatttctacagttgtgaggaaactatagtttcggttttctgtagttaataaagcggaattttgcttagctgttctgtaattgtcgatttgaattggattggatggcaaaggttacgaggtgatgctgcttgtctttttc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052249.1 RefSeq:Os02g0121000]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 2]] | |
| − | [[Category:Chromosome 2]]
| |
