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| − | {{JaponicaGene|
| + | The rice '''Os01g0949400''' was reported as ''' se13''' in 2011 <ref name="ref1" /> by researchers from the Japan. |
| − | GeneName = Os01g0949400|
| + | <br> |
| − | Description = Similar to Phytochromobilin synthase precursor|
| + | ==Annotated Information== |
| − | Version = NM_001051934.1 GI:115442238 GeneID:4325761|
| + | ===Gene Symbol=== |
| − | Length = 2690 bp|
| + | *'''Os01g0949400 <=> se13''' |
| − | Definition = Oryza sativa Japonica Group Os01g0949400, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *The complete loss of photoperiodic responser of X61 is caused by a loss of function of the '''Se13''' (OsHY2) gene involved in phytochrome chromophore biosynthesis. |
| | + | <b> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *Graduate School of Agriculture, Kyoto University, Kitashirakawa, Sakyou, Kyoto 606-8502, Japan |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Faculty of Agriculture, Okayama University, |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | <br> |
| − | |
| + | ==References== |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | <references> |
| − | AP = Chromosome 1:43617245..43619934|
| + | <ref name="ref1"> |
| − | CDS = 43617374..43617562,43617660..43617710,43617853..43617956,43618122..43618254,43618340..43618433<br>,43618544..43618638,43619069..43619188,43619760..43619879|
| + | Complete loss of photoperiodic response in the rice mutant line X61 is caused by deWciency of phytochrome chromophore biosynthesis gene |
| − | GCID = <gbrowseImage1>
| + | </ref> |
| − | name=NC_008394:43617245..43619934
| + | |
| − | source=RiceChromosome01
| + | </references> |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage1>| | + | |
| − | GSID = <gbrowseImage2>
| + | ==Structured Information== |
| − | name=NC_008394:43617245..43619934 | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | source=RiceChromosome01
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atgagcagcggcggcgtcggcggcgggagcttgggcgccggcttgctgtaccacaagttcgtcagcttcgcgctggaggagacccgactccggaccaccctcacccctcacccctcccaggaaaagttcaagtctataaaacccaatgatgataatacagttttcaatgctctctcattcagtgcaccgaaaattagattgcttcgcagcttgacaatcgagaagaaaaactcatatcaggttcttgactttgccgctttctctgaacctgaatacgatcttcctatattttgcgccaacgtttttacaactcatgcacaaagtattgttgtattggacctcaatcctctatatgatactacagtgcacaaggattacaaagataagtactataggagtataatgcctcttgtacacaagtataacgagcttcttccttggggtggcaagattacgagtgagtcattgaagttcttctctccaattgtgatctggacaatatttgagtcaactgaacacaaccaccatgttctacattcagctttcgtggattattataaggtctggcttgaattaatggaccaagcaattaaagaaaataacaaagcaacaattgctcgtaaccaagaagaacaacataaatatctcacatggagggctgagaaggatcctggctatccccttttgaagaagttaattggtgaaagtcgtgccgaggatctggtgatggagtttctgtttgaaggagtaaatactcttggaacaaaatcatttctggattatttccctgaatacgcccgtgatgatgggtcagtgaacaagaaaaggagtatgatcggcaagtcttttgaaactaggccttgggacgccaatggagaattcattggcgatgccgaagcacagtaa</cdnaseq>|
| |
| − | AA = <aaseq>MSSGGVGGGSLGAGLLYHKFVSFALEETRLRTTLTPHPSQEKFK SIKPNDDNTVFNALSFSAPKIRLLRSLTIEKKNSYQVLDFAAFSEPEYDLPIFCANVF TTHAQSIVVLDLNPLYDTTVHKDYKDKYYRSIMPLVHKYNELLPWGGKITSESLKFFS PIVIWTIFESTEHNHHVLHSAFVDYYKVWLELMDQAIKENNKATIARNQEEQHKYLTW RAEKDPGYPLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKR SMIGKSFETRPWDANGEFIGDAEAQ</aaseq>|
| |
| − | DNA = <dnaseqindica>2373..2561#2225..2275#1979..2082#1681..1813#1502..1595#1297..1391#747..866#56..175#acttgccactgaagagtggctgcttgcaggcttggcttgcagctggggagagagcatgagcagcggcggcgtcggcggcgggagcttgggcgccggcttgctgtaccacaagttcgtcagcttcgcgctggaggagacccgactccggaccaccctcacccctcacccctcccaggttcttcttcttgttgttcttcctaccttagcatgctccttgcagcaaaacaaaatctagctcatgttcttgcaacctagtagagtctactgttagctacttggttcaaatactggtgaactactaggtgcccttggtttgatgatttttttttctgtctgaaaaacaaaattgtaatagttgtgagctagagctaccactacgaccatactgttgcgattggtcgttacctgatgattttttttttttgctattgtagaccagcactgggaaacctagctttcatatgtgaacaaattaatcccttgtaaacaatgacataacctaatcgttgtttctttagtcgcaaccaagtgattgtgattacttgtttaatcttgtgaagaagcaggctaccaagcatagacatttgattgtgcaatttatttatttatagtagtatctatcagagctatgtcgcccaatagtggcagctagcttcaaccatgtttctaagccctgtctcaggctgtcaatatttctgtctcatgtaaatgtaagtagttgaccttgtattgttttatgcttccaggaaaagttcaagtctataaaacccaatgatgataatacagttttcaatgctctctcattcagtgcaccgaaaattagattgcttcgcagcttgacaatcgagaagaaaaactcatatcaggtatttaatctatgttggggatttctgttcaagtttacttgatcaaaactctcttaacaataccacaagtccacaatgttgctttccctgacttatctcctattcccctgtgctttaaacattgtcctggttctgcttcattgtgatttggaacgtttatatccagtcatagttctacaacacgatccacgttaaatctttcgttgatctttcactgaaaaaaaaaatgtattgctttgatttgatcaatttatgactattctttttctacaatgcaacaaattaaaagtgttgacccgccagcttacgtcatgttttaccattctccatataacatgtgaagagttttgcttgctagttacaattgaatgccccatatctctatctaggaaaatgctccactatacttacaatgcatattcctatgcaggttcttgactttgccgctttctctgaacctgaatacgatcttcctatattttgcgccaacgtttttacaactcatgcacaaagtattgttgtattgtaagtgtcagagaatagttgctgttgcaaggaaaagtattgttggctttcttccttgcctaaaacctaatggatatgagccctgaacgaacaattcaaactatctgcagggacctcaatcctctatatgatactacagtgcacaaggattacaaagataagtactataggagtataatgcctcttgtacacaagtataacgaggtacatggatctttcctggctccacccaacctattgcctcataaattgttatttagctcgatatctttatttagaggatatgcagcttcttccttggggtggcaagattacgagtgagtcattgaagttcttctctccaattgtgatctggacaatatttgagtcaactgaacacaaccaccatgttctacattcagctttcgtggattattataaggcaagaccagactatttctttaaattttctcaaaaagtttaagagaaacacgaaatttgaacaagtttcctgcccttgttttgtcaatgtgaattttggactgaatttcttgaaggattattctcttgtgtgcagccatcaaatctgaatattctcactatgtaggtctggcttgaattaatggaccaagcaattaaagaaaataacaaagcaacaattgctcgtaaccaagaagaacaacataaatatctcacatggagggctgagaaggttgtttttttattccatcagaatcagatatcactttagaaaattatactcggagacttgagtattacttgcctcattctgctactcatccattggtgttatgaaagatactatgttgatcttgtgcatcctctatgtgcaggatcctggctatccccttttgaagaagttaattggtgaaagtcgtgccgaggttttgtctgggccatcactacatttatacttacttttgacttatattctgtgtggtgttatttgaattttgaggtatgtatcatcttgacaatcaggatctggtgatggagtttctgtttgaaggagtaaatactcttggaacaaaatcatttctggattatttccctgaatacgcccgtgatgatgggtcagtgaacaagaaaaggagtatgatcggcaagtcttttgaaactaggccttgggacgccaatggagaattcattggcgatgccgaagcacagtaaaatgttcgctacgcctttcggcctgatcaatctctcttatgcttgtagtactgttttctttttttttagaaaacttacatttttcatgctcatatccctgaacttggattgaataagaagagattggtg</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051934.1 RefSeq:Os01g0949400]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
| |
| − | [[Category:Chromosome 1]]
| |
