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| − | {{JaponicaGene|
| + | The rice '''Os01g0788400''' was reported as ''' PME1''' in 2011 <ref name="ref1" /> by researchers from the Korea. |
| − | GeneName = Os01g0788400|
| + | <br> |
| − | Description = Similar to Pectinesterase (EC 3.1.1.11) (Fragment)|
| + | ==Annotated Information== |
| − | Version = NM_001051015.1 GI:115440400 GeneID:4325861|
| + | ===Gene Symbol=== |
| − | Length = 6645 bp|
| + | *'''Os01g0788400 <=> PME1''' |
| − | Definition = Oryza sativa Japonica Group Os01g0788400, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *WRKY14 appeared to play a key regulatory role in MeOH-induced Trp and Trp-derived secondary metabolite biosynthesis. |
| | + | <br> |
| | + | ===Mutant=== |
| | + | *This MeOH-induced Trp synthesis was positively regulated by abscisic acid but negatively regulated by cytokinin, suggesting hormonal involvement in the action of MeOH. Endogenous overproduction or suppression of MeOH either by PME1 overexpression or RNA interference (RNAi) gene silencing revealed that PME1 overexpressing lines produced twofold higher Trp levels with elevated Trp biosynthetic gene expression, whereas RNAi lines showed twofold reduction in Trp level in healthy control rice leaves, suggesting that MeOH acts as an endogenous elicitor to enhance Trp biosynthesis. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *Department of Biotechnology, Interdisciplinary Program of Graduate School for Bioenergy |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Biomaterials,Bioenergy Research Center, Chonnam National University, Gwangju, 500-757, Republic of Korea |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | <br> |
| − | |
| + | ==References== |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | <references> |
| − | AP = Chromosome 1:35209281..35215925|
| + | <ref name="ref1"> |
| − | CDS = 35209338..35210283,35215070..35215764|
| + | Methanol is an endogenous elicitor molecule for the synthesis of tryptophan and tryptophan-derived secondary metabolites upon senescence of detached rice leaves |
| − | GCID = <gbrowseImage1>
| + | </ref> |
| − | name=NC_008394:35209281..35215925
| + | |
| − | source=RiceChromosome01
| + | </references> |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage1>| | + | ==Structured Information== |
| − | GSID = <gbrowseImage2>
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | name=NC_008394:35209281..35215925 | |
| − | source=RiceChromosome01
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atgcgtcagagagacgagcctctcctctcttctccctcgcacagaaacgcctacccatgcaaacttctatcgttcacgctgctctctttagccaccgtgctctgcctctgcgcgggcgccgccttcctcctactctccccgacggccacgaacctctgcgcgagctcccctgacccggcctcgtgccaagccatcgtcgccgacgccgtcctagcgtccccgcactcccacccgagccgcccggcgcacgtcctccgcgccatccttgccacgtctctcgatcggcatgacgcggccgcggaagcggtggcgggcatgcgccggcgcgccagcgacccgaggcaccgcgcggccctggaggactgcgtccagctgatggggctcgcgcgcgaccgtctcgccgacgcggcgggcgcgcccgacgtcgacgtcgacgtcgacgacgcgaggacgtggctcagcgccgtgctcaccgaccacgtgacgtgcctggacggcctcgacgacgggccgctgcgcgactccgtgggggcgcacctggagccgctcaagtccctcgcgagcgcgtcgctcgccgtgctcagcgccgccggccgcggcgctcgggacgtgctcgcggaggccgtggacaggttcccgtcgtggctgacggcgagagaccgcacgctcctcgacgcgggcgcgggcgccgtgcaggcggacgtggtggtggccaaagacgggagcggcaagtacacgacgataaaggaggcggtggacgcggcccccgacggcggcaagagccggtacgtgatctacgtgaagaagggggtgtacaaggagaacctcgaggtggggaagacgaagcgggtgctgatgatcgtcggcgacggcatggaccagacggtcatcaccggcagccgcaacgtggtcgacggctccacaactttcaactccgccacgctagccttgtcgggcgacgggatcatcctccaggacctcaaggtggagaacacggcgggcgccgagaagcagcaggcggtggccctccgcgtgagcgccgaccgcgccgtgatcaaccgctgccgcctggacggctaccaggacaccctgtacgcgcaccagctccgccagttctaccgcgactgcgccgtctccggcacggtggacttcgtgttcggcaacgccgcggcggtgctccagggctgcgtgctcacggcgcggcgccccgcgcaggcgcagaagaacgcggtcacggcgcagggccggaccgacccgaaccagaacaccgggacgtccatccaccggtgccgcgtcgtcccggcgcccgacctggcgcccgccgcgaagcagttcccgacgttcctgggccggccgtggaaggagtactcgcggacggtgtacatgctgtcctacctggactcgcacgtcgacccgaggggttggctcgagtggaacggcgccgacttcgcgctcaagacgctcttctacggcgagtaccagaaccagggccccggcgccagcacggccggccgcgtcaactggcccgggtaccacgtcatcacggaccagagcgtcgccatgcagttcaccgtggggcagttcatccagggcggaaactggctcaaggccaccggcgtcaactacaacgaggggctctga</cdnaseq>|
| |
| − | AA = <aaseq>MRQRDEPLLSSPSHRNAYPCKLLSFTLLSLATVLCLCAGAAFLL LSPTATNLCASSPDPASCQAIVADAVLASPHSHPSRPAHVLRAILATSLDRHDAAAEA VAGMRRRASDPRHRAALEDCVQLMGLARDRLADAAGAPDVDVDVDDARTWLSAVLTDH VTCLDGLDDGPLRDSVGAHLEPLKSLASASLAVLSAAGRGARDVLAEAVDRFPSWLTA RDRTLLDAGAGAVQADVVVAKDGSGKYTTIKEAVDAAPDGGKSRYVIYVKKGVYKENL EVGKTKRVLMIVGDGMDQTVITGSRNVVDGSTTFNSATLALSGDGIILQDLKVENTAG AEKQQAVALRVSADRAVINRCRLDGYQDTLYAHQLRQFYRDCAVSGTVDFVFGNAAAV LQGCVLTARRPAQAQKNAVTAQGRTDPNQNTGTSIHRCRVVPAPDLAPAAKQFPTFLG RPWKEYSRTVYMLSYLDSHVDPRGWLEWNGADFALKTLFYGEYQNQGPGASTAGRVNW PGYHVITDQSVAMQFTVGQFIQGGNWLKATGVNYNEGL</aaseq>|
| |
| − | DNA = <dnaseqindica>58..1003#5790..6484#cacaggttgcagcagtagttgtaaacaggttcacttgtcgcacagggataggacaccatgcgtcagagagacgagcctctcctctcttctccctcgcacagaaacgcctacccatgcaaacttctatcgttcacgctgctctctttagccaccgtgctctgcctctgcgcgggcgccgccttcctcctactctccccgacggccacgaacctctgcgcgagctcccctgacccggcctcgtgccaagccatcgtcgccgacgccgtcctagcgtccccgcactcccacccgagccgcccggcgcacgtcctccgcgccatccttgccacgtctctcgatcggcatgacgcggccgcggaagcggtggcgggcatgcgccggcgcgccagcgacccgaggcaccgcgcggccctggaggactgcgtccagctgatggggctcgcgcgcgaccgtctcgccgacgcggcgggcgcgcccgacgtcgacgtcgacgtcgacgacgcgaggacgtggctcagcgccgtgctcaccgaccacgtgacgtgcctggacggcctcgacgacgggccgctgcgcgactccgtgggggcgcacctggagccgctcaagtccctcgcgagcgcgtcgctcgccgtgctcagcgccgccggccgcggcgctcgggacgtgctcgcggaggccgtggacaggttcccgtcgtggctgacggcgagagaccgcacgctcctcgacgcgggcgcgggcgccgtgcaggcggacgtggtggtggccaaagacgggagcggcaagtacacgacgataaaggaggcggtggacgcggcccccgacggcggcaagagccggtacgtgatctacgtgaagaagggggtgtacaaggagaacctcgaggtggggaagacgaagcgggtgctgatgatcgtcggcgacggcatggaccagacggtcatcaccggcagccgcaacgtggtcgacggctccacaactttcaactccgccacgctaggtgatgctctcgatcgccgtctgcgtctttgtctctctctactttctgaaattcgcactcattccatctacgacactacgactatttcgcaaaccgcatctttactttgcataatacaaccttttcaaaagggaaatcacaacatgataattcctgaacgttggcgcgcatgaatattcttttctcttcttcaaactaaaccatgggtattctttcagattgccttcttcgtaacgtcctactgacatgcatggatagctacgcatttcttgcttgatatacactagtcatctaaacttagcttggtaatcggtataccagtctacacagtactgtgtacgaggcacagtactgtagtgcactgatatactccataatataagccccgctaagctcacgtacgtaggattgggtcagtaaacagttagtgtcaacttcgaaataaccggaaaagaatcaacaagtggatctcataatctaattcgttgactaatatagtataagcagatagaaaaatgattaccagtggttgttggtgacatggtgcgcatgtgcagatcgatgtgccattggctagaatacacacaggtggaaacatagagtagttatccccaaaagcaaagcacttaaaatcttcggcaatggttgtttggcttaaatggtggtagcatcacatcacacagtggacgtacttaattttgcacatgtccgtgctacgtgctccatgccatgctccactgctacataaatacaccgcacttacacatccacaaatacctgctctatttttttaggctgtgtgtttagttcagcgcaaagtttggattttagttgaaattagagatgatgtgactgaaaagttgtgtatgtataacaggttgatatgatggaaaaggactgaagtttggatccaaactttagatctaaacacagccttatttaacaaacacatgctctgttgttggactatagatacattcctagcctcattgaaaacgcacctacgtatacttaacatttaggagtatcgggatttgagttttttttatactccctctgggttgataatacttgtcgttttggataagggcacggtctccaaaaaacaactttaactattattttctattataatatgtataaaagtgttaacaaatatatgattttattaaagtactttttaagactaatctatatatatgtagtcaccatatttaaaagacaaatattttaaaaatgattcataatcaaagactctaaagtttgacctcacccttgcctaaaacgacaagtattatcagcccggagggagtatcatggtttactcgtagtaattattttctgatttttttagtaattttagatcttaggcatcgtaatttgaatcctttagagggtgggcatcataatttaaatttcttagattatatacttttctaatttattattaattattttcaaaccttctagatggtggtttcacccacatttcaatttttttttaaatcatcggaggggagagtcgtgttcccacctgatttttccatggcaaagagagtttccccacgtttcagcttttaatgcgtggattttagggaccgatcactttgatgaaaaaaaaacataccaaattatggcaatgccaaaattttggcatagttgtcaaaattttggtgacatgacaaaattttggcagaatttcttatatagttaccaaaatttgacagcaaactaatgtatctaattttttttttgacaactttattaaaacttggtaaagttaaaaatggtatctaagtaaaaaaaagcccttaattcagtaaccatagcagcaggacagaaagctgtcaaggcatccattggtacataattttcttgcaacacagttactaggagtacataacagtgctgaaactgcaccacaggcgataaagcaatgacattcttcggtatcgccttcactcgtcctaattgtttttttttttcgaacgaaacgattttcatatattatatactaaaaatccattaaacttcctacaaacgctctcaaaccgccacgtagcactcctacaaacgctccaagatcgtcacgtggcactttaataaatcatagaaaatctaagaaaaaataaagcatctagccattaattttcatttaatttggtgggaccattatttttaactattagatctatcgtcaaaattatcaatcaaatttatatctcgaaagatctacatcgttccatatctgtacgtgagttgtacatatgtatcctcaaacccacacccgaccaaaaaaaattgtacgtacttctctttccttttttttatttctcactttgttgaaaaaccaatttaataatcagcacatcttaactataatttgttcaaataaaaaatatatctcatggaaacatccaggaaaaatataaataaattaaagttatagatatatcacataacaacatgtataattatattagatttttattttcaaaaataaaacaacttcgactgtgagtagcattttcaaaatttactcaatacctactataaaaatattcatatgacaaaatgacattactaaatttatcttgaatattttcatgtatcatgttttcttcttcatatattgctagaaaattaacgacgaagtatattcttttgataccgtgtcgatgtcctttatctcctacctaggccttcaatcgatctggctgagtttatcaaggcacacaaaatgatacatgtcatcaaaaaaggattaattaagtattaaatattacaaacttaaaaatgggtttatttgatttcctaaaatatttttgtatagaaagtatttacaaaacacgcattgtttagttcgggaaacttttgtagtttgggaacatgctcgtcataaataataaagtagccaatcagataagcactttaaaagtcaaccttacttacttaaacacttaatatgtagtatataatataatttatcaataggaatagccaaatatatatcaatcgtatgtttccactaatcccatgtatataagttctatatagaaattactatccaccaatcgccaagtcataatagttatgaggcatacatgcattatgcaactaataattagttgatatccaataagcatgtacatatgttatcaagtaccaaagataaaggaagtactaagtggtaaccatcaataaatgatatgtaagtagagatacaccaagccaccacgaaaaatagttgactacaagtagaatatgactattattaatagtgttcctacacacctgcatatacttctaattaagatgccacaagacactctaataaaatagagaaaatgtaagaaaattataagaaaaagaaaaaatcatttagccattgatttacacttagaccagtggattcattattgtcaaccattagaatatatctatcaagtaatccctcgctactaaataccggctaatccctccctaagtagttttctctttctttctttgcagctctaaggtttttctcaaattatgtatatatgtagtgaccacttctggtggggttgccgaaaaagccacgccaccacattgctgcttcacaccatcccaccaaatctcttcaaagtatttattttactaatggtataaaagggtattgtgagcactcatataaatgcaggcacatacaacttataaatacaattacacacctaccttataaaaggagaaaagtacattcgtacaggggaaactactattcgctagaaaaaacatatatacttacgataaaaaatatcacatggaaccacattatatcccttttaattataacattctcacctaaatagtgttgataattagcacaaataattttgacaatatagattattctattgtttgttacccatgaatatgcatcggtgaatcggatgtataatgaaagaaaaaaacaaacacatattaactcatatatatatatatatatatatatatatatatatatatatatatatatatttgcgaagaaggatgatatgcgagttcacatataactaggatataaatatttgtttctttactattacaatctattttcttacaaacaataaataaatttcccgcgcatctgcgcgggttttctttctagctgaataaagaagggataaactgtatgagtaaggggccttaggccctagctaactatactgtaagccaatctccgagtctttttttcttccaccaggacccaagttttagcctcctactcgatttttgccatcaaactggccgactcatcctaattgtagcagtatgtactgtgtagaacagtagaagtgtagaagaaccatcgcttggaggcacattctctgaatcaaaggttgacatatagctaaccaaaagcacttattgcaaactgggaatactttaattagcaggcggcacacaagggcgatggaataccgcggcgagtgcaaaaccggagcctgaaacagcccagcttctcgcacaaaccaattaacgacgaacacggcttgacgaacagtattaaaatgccctgtttccaatccactagccctgcccaagggtcaaagtagacggcccaaaacgtacgacacgccgccacgagaccacgatggcacacttgagttaacaacatgcccaatagcttgtacatgaacaatttgcgtggattttcctgtcttgcattgatgcattgactgactgcaagcagtcatgactaagtttgaccttggatatatgcgtaacatatgcgtgcgtgcagccttgtcgggcgacgggatcatcctccaggacctcaaggtggagaacacggcgggcgccgagaagcagcaggcggtggccctccgcgtgagcgccgaccgcgccgtgatcaaccgctgccgcctggacggctaccaggacaccctgtacgcgcaccagctccgccagttctaccgcgactgcgccgtctccggcacggtggacttcgtgttcggcaacgccgcggcggtgctccagggctgcgtgctcacggcgcggcgccccgcgcaggcgcagaagaacgcggtcacggcgcagggccggaccgacccgaaccagaacaccgggacgtccatccaccggtgccgcgtcgtcccggcgcccgacctggcgcccgccgcgaagcagttcccgacgttcctgggccggccgtggaaggagtactcgcggacggtgtacatgctgtcctacctggactcgcacgtcgacccgaggggttggctcgagtggaacggcgccgacttcgcgctcaagacgctcttctacggcgagtaccagaaccagggccccggcgccagcacggccggccgcgtcaactggcccgggtaccacgtcatcacggaccagagcgtcgccatgcagttcaccgtggggcagttcatccagggcggaaactggctcaaggccaccggcgtcaactacaacgaggggctctgattagaagggtagagattattgatctgccatcttgtacgagttgccatgttcgcatgcaccctgttggttccaatacggagtactaatcatcgtcatcatcaggaaataaaagcaataaagcatgctaatggcgcagatcagatcaatctgatcggaggtgc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051015.1 RefSeq:Os01g0788400]|
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| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
| |
| − | [[Category:Chromosome 1]]
| |
