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| − | {{JaponicaGene|
| + | The rice '''Os04g0271000''' was reported as ''' OsSRT1''' in 2007 <ref name="ref1" /> by researchers from the China. |
| − | GeneName = Os04g0271000|
| + | <br> |
| − | Description = Similar to NAD-dependent deacetylase sirtuin-7 (EC 3.5.1.-) (SIR2-like protein 7). Splice isoform 2|
| + | ==Annotated Information== |
| − | Version = NM_001058878.1 GI:115457485 GeneID:4335342|
| + | ===Gene Symbol=== |
| − | Length = 12342 bp|
| + | *'''Os04g0271000 <=> OsSRT1''' |
| − | Definition = Oryza sativa Japonica Group Os04g0271000, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *'''OsSRT1''' down-regulation induced histone H3K9 acetylation on the transposable elements and some of the hypersensitive response-related genes |
| | + | <br> |
| | + | ===Expression=== |
| | + | *'''OsSRT1''' is a widely expressed nuclear protein with higher levels in rapidly dividing tissues. |
| | + | <br> |
| | + | ===Evolution=== |
| | + | *'''OsSRT1''' RNA interference induced an increase of histone H3K9 (lysine-9 of H3) acetylation and a decrease of H3K9 dimethylation, leading to H2O2 production, DNA fragmentation, cell death, and lesions |
| | + | mimicking plant hypersensitive responses during incompatible interactions with pathogens, whereas overexpression of '''OsSRT1''' enhanced tolerance to oxidative stress. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University,Wuhan 430070, China (L.H., Q.S., F.Q., C.L., Y.Z.); |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Department of Quartermaster,Military Economy Academy, Wuhan 430035, China (L.H.); |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *Institut de Biotechnologie des Plantes, Universite ´ Paris Sud 11, 91405 Orsay, France (D.-X.Z.) |
| − | |
| + | <br> |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | ==References== |
| − | AP = Chromosome 4:11363057..11375398|
| + | <references> |
| − | CDS = 11363359..11363700,11364627..11364729,11364813..11364880,11366048..11366127,11366519..11366612<br>,11366686..11366739,11368519..11368597,11370400..11370479,11370930..11371038<br>,11371159..11371259,11372753..11372872,11373534..11373626,11373959..11373988<br>,11374937..11375035|
| + | <ref name="ref1"> |
| − | GCID = <gbrowseImage1>
| + | Down-Regulation of a SILENT INFORMATION REGULATOR2-Related Histone Deacetylase Gene, OsSRT1, Induces DNA Fragmentation and Cell Death in Rice |
| − | name=NC_008397:11363057..11375398
| + | </ref> |
| − | source=RiceChromosome04
| + | |
| − | preset=GeneLocation
| + | </references> |
| − | </gbrowseImage1>| | + | <br> |
| − | GSID = <gbrowseImage2>
| + | ==Structured Information== |
| − | name=NC_008397:11363057..11375398 | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | source=RiceChromosome04
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atgtcacttggctatgccgagaagctatcctaccgagaggatgtgggaaatgtcggcatgcctgagatcttcgactctcctgaactcctccacaagaagatagaagagcttgcagtcatggtgcgagagagtaagcatttggtggtgtttactggagcaggcatatcaacttcatcaggcatacctgacttccgagggcccaaaggcgtgtggacactgcagcgttcaggaaaaggtgttcctggtgcatcactgccgtttcaccgagctgttccaaccttgactcatatggcactggttgaattggaaaaaacaggacgattaaagtttgtcataagccagaatgttgatagcttacatctccgctctggcctcccaagggagaagctggctgaattgcatggaaattctttcaaggagatctgcccaagctgtaaaaaggagtaccttcgtgattttgaaattgagacgataggactgaaggatactccaaggcgttgttctgataagaactgtggagctagattaaaagacacagttcttgattgggaggatgctttaccccctgaggagatggatgctgccaaggagcagtgtcaaaaagctgatcttgtcctatgtttaggaactagtctgcagattactcctgcttgtaatatgcctctgttgtcactgaagaatggggggagggtggctattgtaaatcttcaggcaactccgaaggataaaaaggcaagccttgtcattcatggacttgtggataaggtcattgctggggttatgtatatgatgaatctgcgtatccctccatatattcgtactgactttgttcaaattagtctccggaactcggtcaaaaaaaaatgcgtgagatggactctccgagtaacaagcattcatggcttgcgagcacctttgccatttcttcgatcagttgaggtttcctttcctgaaagacctgacatgaagcctgtagtactaaaggagcaaccattttctttgcagagagaaacatcaatgaatagaccgtttgtcatgctattgacattcaactttagtgatggttgcggctgttcgagctcttccattgaatggcctgttgattttctgaagcaaaaagacagctttgtcagggatagaagtctagtcctgcaagagttgcaacatgctgcagagcatcgatcacgtgcagggcagcatgcaattctggagagggagggtgtgccaagagctgaaacgtcaattcatgcacttgtgaccaacatcgtcaggtatgatactgaagatagcaaggcggcagttcccatggctacatggatgaacagcaacggcagcctttcgaaacggcatatggatgccattggttgcaacccagcatcgtcaaaaaagcagaagttggttgctactcgtcatcggcgaaagggcttgaaccctgctactcagaaagtttga</cdnaseq>|
| |
| − | AA = <aaseq>MSLGYAEKLSYREDVGNVGMPEIFDSPELLHKKIEELAVMVRES KHLVVFTGAGISTSSGIPDFRGPKGVWTLQRSGKGVPGASLPFHRAVPTLTHMALVEL EKTGRLKFVISQNVDSLHLRSGLPREKLAELHGNSFKEICPSCKKEYLRDFEIETIGL KDTPRRCSDKNCGARLKDTVLDWEDALPPEEMDAAKEQCQKADLVLCLGTSLQITPAC NMPLLSLKNGGRVAIVNLQATPKDKKASLVIHGLVDKVIAGVMYMMNLRIPPYIRTDF VQISLRNSVKKKCVRWTLRVTSIHGLRAPLPFLRSVEVSFPERPDMKPVVLKEQPFSL QRETSMNRPFVMLLTFNFSDGCGCSSSSIEWPVDFLKQKDSFVRDRSLVLQELQHAAE HRSRAGQHAILEREGVPRAETSIHALVTNIVRYDTEDSKAAVPMATWMNSNGSLSKRH MDAIGCNPASSKKQKLVATRHRRKGLNPATQKV</aaseq>|
| |
| − | DNA = <dnaseqindica>11699..12040#10670..10772#10519..10586#9272..9351#8787..8880#8660..8713#6802..6880#4920..4999#4361..4469#4140..4240#2527..2646#1773..1865#1411..1440#364..462#ccgatccccatctatcccgcgagcgagcacggggcgccgtcgttcgccctgccgcatcaggtgagcacatcctccgccacagccgaatccccatccatcgcgcgagcgaacgagcagggtcgccgtcgctcgtcctgctgcttccgccgcttccgtcctctttcccatctctctctctctctctctacccacgccctttttgtcgaatttgcgttaaccctagcttctgttctagaaatttgccttaaactcaatactaataactgtttgatggttccccaaaaagtttgggggttcaactgaaccaccatgtcctatgttagatccgcctgaattttcgggagaagcttacttgattgagagatgtcacttggctatgccgagaagctatcctaccgagaggatgtgggaaatgtcggcatgcctgagatcttcgactctcctgaactcctccacaagaaggttggtttcacatgccattaaacttttacctccagtttgtggattctttgcttcagggtggcaagttacgagggaatcatccatgggttttgtattttttttgagctaaattatgtggtcaaattgattcttttaatgggttttaagcatattttactttagatttttggacaaagtgagattagcttgaaatgtagtcactcaattcttttttattcatcagtttgggcattgacatggtccataaccttttccattttatgattgtgaaaacttttaaaagtataatcatgttgaagtacttttggtaagaaatacgctaataccattttcatatgacaaatctaaatagctttactggtaaaaaatatctttgaatgttgattacatgcattctggtatgatgagtagaacataatggagagtatactaaacatgagtgaacttagaagagagaaaacatttagcctttgctgttttttacccttagagctgtatgtgggtataatgcagagcatgtgtgtgatctttgaaagaagagagttctttattgtctactcaaagttgatccctttaatgtcatttcctggtggcaaataagttgacacctactgtctttgtttggtgcctgagttctatcctcatcttataatttgatcatgaacatgttagcataagttatgctcggctccatgacagtactgaagcaaaattgatatcaataatggttatggcatggctccagcgctcaaaatatcctatcgcgctggaaaatatactaaaatgaactaatggctgtgaaatatctggcaggcatttgatctatcctcttgtggctttgtacactccatgttgtagtcaatatttctatatactgataggggtgcgccagtgaatttatttcacattttagacatgttttaatttttttactgggttgttgtccagatagaagagcttgcagtcatggtgcgagaggtttgtttttcactgtgaatctcaataaattttgtaattatgatttatatatatactcctccgttttttaaaatatgacactgttgactttttgagatacgtttgaccaatcgtattatttaaaaaattcatgtaattctcatttattttattgtgacatgatttatcatcaaatgttttttaagcatgacttaaatatttttatatttgcacaaaaaaaattgaataagacgaatggccaaacgtttataaaaaagtcaacaacatcatatattaaaaaaaaacggaggtagtatatagaaatttcaatgaattggtcctgattgctgcagagtaagcatttggtggtgtttactggagcaggcatatcaacttcatcaggcatacctgacttccgagggcccaaaggcgtgtggacactgcaggtggtactgctgtttgtgcagctatatctcacaataggtcaatagctctcttttaatggactagcaaaatgcccatgctttgctatgggtaaaacaaaatatatgatattgtcatagataattttttttaatcaaatatggtactattacttgcttgcttatttgaatactattactttagtatattcacctgattcaaacaaatattactaggcataatatcagaaaaaatcagggactaatttgtaaaaggtgtaaaagtagtggtgttggcagagccaccaccactactagtgtctgttacagtagtatagatgaatttattcttttgagatggttttatgatgcttgattgcaaagatgtgtctgcacatactgaagtagttaagtaaatgcagtctattttcaagtgcatgatagctgagtcttcgcttggttatcttttaattttggtaccttaaatttatgctttattattatttttggattttttatatgccacggaacaggtttaggaaaaaggttattgaatggtatttgaatgttataattaaattttaaatatttgcaattcctatggattatagtatattttgtgatcttttacatttgaattaatattatgacacagtcatttacacatgttgcatatgttgtctagcgttcaggaaaaggtgttcctggtgcatcactgccgtttcaccgagctgttccaaccttgactcatatggcactggttgaattggaaaaaacaggacgattaaagtttgtcataagccaggttcatatacctaactcaagttgtatatactgcactttgaattggtacctatgtacaaaaccagtctctacaactactagtatagttaaatcagttcgtaggagttgcagatattgactgctcacttattgtagtggtaaggtgttaggatattgaaatcaacacgcaatacaactgttacagacttggggctgcgtgtcccatgggcatgccacgcatcatgccagcagtagtgatttgtaggaaaggcaccccacaactaggaagcccttacaattaaaggacattcagtcttgtaaatattgagcgcaatcacagcggaggaggccctgcagttaaattttattgaaaaaaatatttgtaaatagtacaaaggaaaattacaaggatctaagccaagattctaaaagatctctctctggtctttttagttttaaaagaagatcctctttaaaaagactttgccaacatgaaaaatgagggaacgctgcttccaaagattagatcatttcactgcttccatatattctatgctgtataaagcaccttttcaatgaagcacacttgctggtgttgtgccttagctgtgaattgtgatcattatgttattgaaactcagggatgtatcccaggttatccctatcttgccccaacattctcaaaaaaaatgcaaacaaatttctcttactccaatgttgcacaagacacaaagaaactcactttaatcttgtaatttgccaagtgaacgtgaaaacccttccatctatctcattcccaggcttagccttagggtgcattcgtttctgaggttggggggaggttttcagctacatgcgaaacgagagctcattagcaaatgattaattaagtattaactattataaacttgaaaaattgatttatttgatttatttaaagaaaatcctatatagaaactttttgctcaaaacacaccgtttagtagttcaggaagcatgctaacggaaaatgaggaagttgtttgcagttgccgcttaggactcagcattagttcttttctgattattcacctgattattgaaacagattatttgctccacgcttcgaaaaatacattttctcaaaaaattcttttactgaatttcttagaccacttattttaagctatttattaagttaatttatcaatatttactttatccctaaaattaattagataatcggcagcaacaatccactcaataatctgtttcaaactaagccttagccttgtaatgaccatcggcatggaagagcagctagcaccgaagaccgagtatgtttctatctctccggtcactaataccaataactccattttccatgtttgacaaacttcagtactaactttgttgtgttttaaatttaattacaatgttctgtcgtgtgatgaacaaattgattttatcacgatcaagcttatggtatttatgaaacttaagctttcacggagctgatggagttgtctttgccagaatgttgatagcttacatctccgctctggcctcccaagggagaagctggctgaattgcatggaaattctttcaaggagatctgcccaagctgtaaaaaggagtatgctttagcctgctttacttgactatactttatctgggactataaacaccaaaatatttccttttttactgtggtggtttatttaattggcttattccagatcccacttgtttgaaggtaccttcgtgattttgaaattgagacgataggactgaaggatactccaaggcgttgttctgataagaactgtggagctagattaaaagacacagttcttgattgggaggtacgtttcaaatgtgctggacttaagttatatttatatttctttgttagtgggccatacttgcttagccctttagcccatctgcaacagattcttgcttttgtgttttttccaaaaattgccaaggtgggtggttcatttgttggcaatttggccataaaagctggctttctccatttcaacacaaatcaaatttacaaacaatgcatgcttagggtattcactgtgaaaagctttaagctgttttacagactattatgtttttcttacgactagtattcaacatgatatcctctgtacgttcactataacaagaaaataaatagagaagttggttagtgatgtgtttgccttgttat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| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058878.1 RefSeq:Os04g0271000]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 4]]
| |
| − | [[Category:Chromosome 4]]
| |
