|
|
| (2 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice '''Os05g0490700''' was reported as ''' SDG728''' in 2010 <ref name="ref1" /> by researchers from the China. |
| − | | + | <br> |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''Os05g0490700 <=> SDG728''' |
| | + | <br> |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | *'''SDG728'''-mediated H3K9 methylation may play an important role in retrotransposon repression. |
| − | | + | <br> |
| − | ===Expression===
| + | ===Mutant=== |
| − | Please input expression information here.
| + | *Down-regulation of a rice Su(var)3–9 homolog (SUVH), namely '''SDG728''', decreased H3K9 methylation and altered seed morphology. Overexpression of the gene increased H3K9 methylation. |
| − | | + | <br> |
| − | ===Evolution=== | |
| − | Please input evolution information here.
| |
| − | | |
| − | You can also add sub-section(s) at will.
| |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China |
| − | | + | *Institut de Biotechnologie des Plantes, UMR8618, CNRS, Universite ´ Paris sud 11, 91405 Orsay, France |
| | + | <br> |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | <ref name="ref1"> |
| | + | Rice SUVH Histone Methyltransferase Genes Display Specific Functions in Chromatin Modification and Retrotransposon Repression |
| | + | </ref> |
| | | | |
| | + | </references> |
| | + | <br> |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | GeneName = Os05g0490700|
| |
| − | Description = Similar to SET domain protein SDG111|
| |
| − | Version = NM_001062438.1 GI:115464606 GeneID:4339168|
| |
| − | Length = 6021 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0490700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| |
| − | AP = Chromosome 5:24162805..24168825|
| |
| − | CDS = 24164035..24166053|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008398:24162805..24168825
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008398:24162805..24168825
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggatagggcgtcgaatttcatacctggtccttatcaagaactcgtggatgccaaaccaattagatcgttagctcctatgttccctgcacccttgggaatcaatgtcaaccagtcaagcaccccgcctttggtatgtgtcactccggttggccaatttcctgtcggttttggttctggaatccttcctacctttggttcaactactgccttcactaccacagcaaatggggtttcttatacaagctacaccaataatggagctattgatgccactcctatctcggcatataagaccagaccaggcattgtatcacttgatggcgatgaaccttactcaggttcagcatctggacggaagtccaagagatcatctggttcagctgctgatggttcaaatggagttaagttcaagcgccctaagccagtttacaagaattttgttgctggcaaggagcttgcctttttaccaccttcatccagtgatcccagggaggttgtggaagcagtccacatgacctttgaagcacttaggcgtagacatctgcaactggatgaaatacaagagactagcaaacgggctgacctgaaggctggcgccatcatgatggcaagcaatatcagggctaatgtgggaaaaagggtaggacttgttcctggagttgaaataggggatattttctatttccggatggagctatgtatcatcgggttgcatgctcctagtatgggtggcattgattatatgagtgctaaatttggaagcgatgaggattctgtggcaatatgtattgttgcagcaggtggctatgagaatgtggatgatgacacagatacactggtgtacagtggttcaggtggcaatagtaggaacagtgaggagaggcatgatcaaaagcttgagagaggtaaccttgctctggagaggagcctgcataggaagaacgagatcagggttgtgcggggcttcagggatccattttgcctgactggaaaaatctacatatatgatggcctctataagattcaggagtcctggaaggagagaacaaagtctggtatcaattgcttcaagtacaaactgctgcgtgagcctggacagcctgatggagctgcattgtggaagatgactcaaggatggatagacaatccagcaagcagaggcagggttatattacctgatctatcatctgcggctgaagctctcccagtttgccttgtcaatgaggtagaccatgagaaaggacctgggcatttcacctatgccagtcaagtcaaatacttgaggcccctcagttctatgaaacccttacagggttgcggatgccagagtgtttgcctgcctggtgatcccaactgtgcttgtggacaacataacggaggtgacttaccttacagctcatcaggacttttggcgtgccgcaagccaataatttatgaatgcggtgatgcttgccattgtactacgaattgccggaacagagtgacccaaaaaggggtcagatttcactttgaggtcttccggactgcaaatcgaggctggggtcttcgctgctgggatcccattcgtgctggtgcatttatctgtgagtatactggtgaggtcattgatgagctcaaagttaatctggatgacagtgaagatgattacatttttcagactgtatgtcctggtgagaagacattaaaattcaactttggtcctgaattgattggtgaggagagtacatatgtatcagctgatgaatttgagccactgcccatcaagattagtgcaaaaaagatgggaaatgtctcacgtttcatgaaccatagttgttccccgaatgttttctggcagccagttcagcatgaccatggagatgacagccacccacatatcatgttctttgcactgaagcacattcctcccatgacagaactgacttttgactatggtgttgctggatctgagtcttcaggttctcgtagaactaagaactgcttttgtggatcatcaaactgccggggagtattttaa</cdnaseq>|
| |
| − | AA = <aaseq>MDRASNFIPGPYQELVDAKPIRSLAPMFPAPLGINVNQSSTPPL VCVTPVGQFPVGFGSGILPTFGSTTAFTTTANGVSYTSYTNNGAIDATPISAYKTRPG IVSLDGDEPYSGSASGRKSKRSSGSAADGSNGVKFKRPKPVYKNFVAGKELAFLPPSS SDPREVVEAVHMTFEALRRRHLQLDEIQETSKRADLKAGAIMMASNIRANVGKRVGLV PGVEIGDIFYFRMELCIIGLHAPSMGGIDYMSAKFGSDEDSVAICIVAAGGYENVDDD TDTLVYSGSGGNSRNSEERHDQKLERGNLALERSLHRKNEIRVVRGFRDPFCLTGKIY IYDGLYKIQESWKERTKSGINCFKYKLLREPGQPDGAALWKMTQGWIDNPASRGRVIL PDLSSAAEALPVCLVNEVDHEKGPGHFTYASQVKYLRPLSSMKPLQGCGCQSVCLPGD PNCACGQHNGGDLPYSSSGLLACRKPIIYECGDACHCTTNCRNRVTQKGVRFHFEVFR TANRGWGLRCWDPIRAGAFICEYTGEVIDELKVNLDDSEDDYIFQTVCPGEKTLKFNF GPELIGEESTYVSADEFEPLPIKISAKKMGNVSRFMNHSCSPNVFWQPVQHDHGDDSH PHIMFFALKHIPPMTELTFDYGVAGSESSGSRRTKNCFCGSSNCRGVF</aaseq>|
| |
| − | DNA = <dnaseqindica>2773..4791#agtcactctctcacctctcggcacggtcgcactcgcacccgcacccccacccccaccccgcgacgccgacgactcccctcccctcttccccttccccttcctcccagatcgcgcgcttgtctgtcggggagagtagaagcggggacgttggggggcgcggaggcggaggacgatggcgctgctctagggtttccaccacctctccactcgccccgccgggtgcttccgtccgttcctccgttggggctcctttgctcaggtaggtagggtttcctctcgctctcccgttggacgtgcgtgcgtgcgtgtgggtgattctccccccgattcgggcgatttttttttcttttcgttggtcaacggcccgcgtgccgttgcgagtgcggcctcgcagaatctcggccttcgtgtgtgatttagggaggggggttccaattcctagggtttcttcaatagtaatttttttgggtttggcgtgttgggttcgaatcatggtggtttagtttggtgttggggggctccaatcctagggtttgtccatcagttcatttcgtatttcagttaattgtgttgtcgaatcgtgctgtagtttgggtttgttcgaggttatctgttccgcggtagggggggttactcgcctataatcccaacttgatgtttaagcatcaggcttcatgtcaaaataaggctgctatgagttgggaatgcttgaaaaggtagccttttttcaacaccaaaaggtagcacattacaataccattgatgcatgatcctggatgcgtgttagatcggttgctttaccgcgaacatttgtgaggtgagtatttctggtggagagctgcatcaaaatgctgcctgcccgtttctgacactccggtaggtttctgaacttccctggtctgcctgccctccttgttgtctgttgcaatgggtgaaacgagcaggatgactttggatggcggcatgcatgcatgatagagcaaacgacaactaggggtttatcttccctcttatgtattgatcaatctggttttggcataattgtctcagtactgaccttatagtggataacggtaagttgtaaatatagttgaaaccgctatacgaattcaggcaactttgacgtgaaatgtggattcaagtcaagtttgctactccctccattgaattacttgtcatcttgggccaaacacacaggctagggtgatgttcaattgtgttacttgagactgtcttacccctaattaatatactttatttctactgagctgtccacattactatgctagtccagcttgttcaatttcatcacaagtagacatggtgcgtggctgaacaggattgtgctagtggtcgtgttacagccaagccaagctctagacgaaatatgctagtggttagaaataaatgagttcattggagcaatatacctactacttttattaggggtaatttgggaacataatacctacaaaacataaaaagctattcaaaaacaaaaccaataccctaaaacatcatctaaataaggatggaggggggtacatctcatgcttggcacccaagaaacttgatactccctccgttccatattataaatcgctttgacttttttcctaatcaaacttctttacatctgaccaagtttataggaaaatgtagcagcatctacaacaccaaattagtttattaaatgtaacattgaatatattttgataatatgtttgcttttgtgttggaaatgttgctatatttttctacaaacttggtcaaactttaaaaaagtttgacaaaggaaaaagtcaaagcgacttataatatgaaatggaaggagtatttaatactccctccatctacttttgatagtcatatttcatcttggcacacagaccaaggataagtaattctacttatcatctatttaaacatgctactagtcattcctcgtaaacaagcgattcattaatatttacattttttgatacccatgcagcccaatcttgtgtggaagaatggagagtcatgcattaaatccgagaaagttattaagatgataggttgttggataaattttcagatttggaaatatgactatcaaaagtagatggagggagtaattttgtgggagaaatagttttttttttagtctgactatatgatttggatgtacatcactgccaattaataagatggtaccatatgcatatgttctatctggtaccagtgaaacttttttaatgcttgaggaaatgtttcatctcaacatgggggaaggtccgatcttttgagttgcatgcactagctagttgaactaaaagcttaatctgatggagtagggcaccaggcaatttactctttacttcaacactccccctcatgtctagattcgaaatcaagacctttggccttgataccatgctatgaattgcgcttgtattcattacagcccaatggtgcagtatatataaatatggtgtatacacaataaaacccctaatcccccaatacaaagaggaaaacacaagtactaattatgttaaatacaatccaggtgccatagacaatggggaatgacagtccaatttagctcttgggtaggtgtatgctatttttgatttatgttgtttgtgaaaagagtaaaaaaaaaacagtttcatattagatccctctctgtgcttaatgttttaccaagccttgctttctccaagttttcttctatcaagtacacactaagattcttctttcttgtgcaggatttttgatacatttgagatggatagggcgtcgaatttcatacctggtccttatcaagaactcgtggatgccaaaccaattagatcgttagctcctatgttccctgcacccttgggaatcaatgtcaaccagtcaagcaccccgcctttggtatgtgtcactccggttggccaatttcctgtcggttttggttctggaatccttcctacctttggttcaactactgccttcactaccacagcaaatggggtttcttatacaagctacaccaataatggagctattgatgccactcctatctcggcatataagaccagaccaggcattgtatcacttgatggcgatgaaccttactcaggttcagcatctggacggaagtccaagagatcatctggttcagctgctgatggttcaaatggagttaagttcaagcgccctaagccagtttacaagaattttgttgctggcaaggagcttgcctttttaccaccttcatccagtgatcccagggaggttgtggaagcagtccacatgacctttgaagcacttaggcgtagacatctgcaactggatgaaatacaagagactagcaaacgggctgacctgaaggctggcgccatcatgatggcaagcaatatcagggctaatgtgggaaaaagggtaggacttgttcctggagttgaaataggggatattttctatttccggatggagctatgtatcatcgggttgcatgctcctagtatgggtggcattgattatatgagtgctaaatttggaagcgatgaggattctgtggcaatatgtattgttgcagcaggtggctatgagaatgtggatgatgacacagatacactggtgtacagtggttcaggtggcaatagtaggaacagtgaggagaggcatgatcaaaagcttgagagaggtaaccttgctctggagaggagcctgcataggaagaacgagatcagggttgtgcggggcttcagggatccattttgcctgactggaaaaatctacatatatgatggcctctataagattcaggagtcctggaaggagagaacaaagtctggtatcaattgcttcaagtacaaactgctgcgtgagcctggacagcctgatggagctgcattgtggaagatgactcaaggatggatagacaatccagcaagcagaggcagggttatattacctgatctatcatctgcggctgaagctctcccagtttgccttgtcaatgaggtagaccatgagaaaggacctgggcatttcacctatgccagtcaagtcaaatacttgaggcccctcagttctatgaaacccttacagggttgcggatgccagagtgtttgcctgcctggtgatcccaactgtgcttgtggacaacataacggaggtgacttaccttacagctcatcaggacttttggcgtgccgcaagccaataatttatgaatgcggtgatgcttgccattgtactacgaattgccggaacagagtgacccaaaaaggggtcagatttcactttgaggtcttccggactgcaaatcgaggctggggtcttcgctgctgggatcccattcgtgctggtgcatttatctgtgagtatactggtgaggtcattgatgagctcaaagttaatctggatgacagtgaagatgattacatttttcagactgtatgtcctggtgagaagacattaaaattcaactttggtcctgaattgattggtgaggagagtacatatgtatcagctgatgaatttgagccactgcccatcaagattagtgcaaaaaagatgggaaatgtctcacgtttcatgaaccatagttgttccccgaatgttttctggcagccagttcagcatgaccatggagatgacagccacccacatatcatgttctttgcactgaagcacattcctcccatgacagaactgacttttgactatggtgttgctggatctgagtcttcaggttctcgtagaactaagaactgcttttgtggatcatcaaactgccggggagtattttaattgatggatgtatcttcattgtgttggatcaacacacaaacctatttgccaggtaaattcctttgacaaaattggttctctttatattgccaaactgcactgtttacttaggtgaaatggtgaatacttactacttatgtgatgcactacactttattgttttatatcatataattgtgcatctacgtctcctacaatatacactccttttgtaatgcacttctggaccgcaaatgttgtgggatgacaaggttaagtgcagtacttctgtgtttgagagaagagggaaagagaagattgagaagatacgcaaaacgagatgagcttttagtacataattaattaataagtattactccctccgtttcacaatgtaagtcattctagcatttcctacattcatatagatgttaatgaatttatatagatatacatgtctagattcattaacatcaatatgaatgtaggaaatgctagaatgacttacattgtgaaacggaggaagtaattattttaaacttgaaaaaatgattaatatgatctttaaagtaacttttctataaaaagtttttgtaaaaaatgcatcatttagcaattcaggaagcgtgcgtgcgaaaaacgagtctcttttcttctctttgtgcacctctcagacgcagcggaaagaaggggcaaatatgttcgtctcctagcgcaataatgcagtggataacaatgccagaaaggcttcactttctgcatacaaagtagtgcacatatgctatttgaatctacctcggagcatcacatacttttgtctcttctatttgtgtttttcagatatcagcttgatatattatttgtgttgttacatctgcagaacttcctgcctgtacccccagattcgagctctggtattattccctgagaatgacgatgggtttcaacatgaactgtgaagagacagtaaattaccgtcgatttgaactgcatagacagttaaattatggttaaactctgttgtgttgatgccgcacttggtaacttggtggcctctgtacaccaccttttgttccatattttgtgggggcatgtatttgatattattgctgcaaatcgtctgtaatccatctgcacccatcctttgtaggctagcgtcagttttaactggaactctagcaattagttgtgacctgtcagatgcagtcatgtacaatgtgccggtttaggatcaccttgcattttcgctct</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062438.1 RefSeq:Os05g0490700]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
| |
| − | [[Category:Chromosome 5]]
| |
