Difference between revisions of "Os01g0900400"

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(Created page with "{{JaponicaGene| GeneName = Os01g0900400| Description = Lipase, class 3 family protein| Version = NM_001051640.2 GI:297598126 GeneID:4325037| Length = 1291 bp| Definition ...")
 
(Annotated Information)
 
(3 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''Os01g0900400''' was reported as ''' eg1''' in 2009 <ref name="ref1" /> by researchers from the China.
GeneName = Os01g0900400|
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<br>
Description = Lipase, class 3 family protein|
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==Annotated Information==
Version = NM_001051640.2 GI:297598126 GeneID:4325037|
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===Gene Symbol===
Length = 1291 bp|
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*'''Os01g0900400 <=> eg1'''
Definition = Oryza sativa Japonica Group Os01g0900400, complete gene.|
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<br>
Source = Oryza sativa Japonica Group
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===Function===
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*'''EG1''' reveals a novel pathway that regulates rice empty-glume fate and spikelet development.
 +
<br>
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===Expression===
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*'''EG1''' is expressed strongly in inflorescence primordia and weakly in developing floral primordia. We also found that the floral meristem and organ identity gene OsLHS1 showed altered expression with respect to both pattern and levels in the eg1 mutant, and is probably responsible for the pleiotropic floral defects in eg1.  
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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==Labs working on this gene==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*The State Key Laboratory of Rice Biology, College of Life Sciences, Zhejiang University, Hangzhou, 310029 China,
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences and National Center for Plant Gene Research, Beijing 100101, China,
            clade; Ehrhartoideae; Oryzeae; Oryza.
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*The State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China, and
|
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*College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110161, China
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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<br>
AP = Chromosome 1:40933233..40934523|
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==References==
CDS = 40933235..40934323|
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<references>
GCID = <gbrowseImage1>
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<ref name="ref1">
name=NC_008394:40933233..40934523
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A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice
source=RiceChromosome01
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</ref>
preset=GeneLocation
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</gbrowseImage1>|
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</references>
GSID = <gbrowseImage2>
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<br>
name=NC_008394:40933233..40934523
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==Structured Information==
source=RiceChromosome01
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>gagccggcgccgcacccggtgctgaggggggaggtggcgcggtacggcgagctggtgggcgcgtgctacaaggcgttcgacctggacccggcgtcgcggaggtacctcaactgcaagtacgggagggagaggatgctggaggaggtcgggatgggcggcgccgggtacgaggtcacccgctacatctacgcggcggcggacgtcagcgtgccgaccatggagccgtcgacgagcgggcgcgggcggtggatcgggtacgtcgcggtgtccaccgacgagatgtcgcggcggctcgggcggcgcgacgtgctcgtctcgttccggggcacggtcacccccgccgagtggatggccaacctcatgagctcgctggaggcggcgcggctcgacccgtgcgacccgcgccccgacgtcaaggtggagtccgggttcctcagcctctacacctccgccgacaagacgtgccgcttcggcggcgccgggagctgccgggagcagctcctccgcgaggtgtcccgcctcgtcgccgcctactccggcggcggcgaggacgtcagcgtcacgctcgccggccacagcatgggcagcgcgctggcgctcctctccgcctacgacctcgccgagctcggcctcaaccgcgccgccccggtcaccgtcttctccttcggcgggccgagggtggggaacgcggcgttcaaggcgcgctgcgacgagctcggcgtcaaggcgctccgcgtcaccaacgtacacgacccgatcaccaagctccccggcgtcttcctcaacgaggccaccgccggcgtgctccgcccgtggcgccactcctgctacacccacgtcggcgtcgagctccccctcgacttcttcaaggtcggcgacctcgcctccgtccacgacctcgccacctacatctccctcctccgtggcgccgacaagaagcagcccgccgccgccgccgccgacgccggcggcgtgctcgccaaggtgatggacttcgtgggtcggcggcgcggcggcggcgcattgccgtggcacgacgcggcgatgatacagatgggcggcttggtgcagacgctcgggctaatctga</cdnaseq>|
 
AA = <aaseq>EPAPHPVLRGEVARYGELVGACYKAFDLDPASRRYLNCKYGRER                    MLEEVGMGGAGYEVTRYIYAAADVSVPTMEPSTSGRGRWIGYVAVSTDEMSRRLGRRD                    VLVSFRGTVTPAEWMANLMSSLEAARLDPCDPRPDVKVESGFLSLYTSADKTCRFGGA                    GSCREQLLREVSRLVAAYSGGGEDVSVTLAGHSMGSALALLSAYDLAELGLNRAAPVT                    VFSFGGPRVGNAAFKARCDELGVKALRVTNVHDPITKLPGVFLNEATAGVLRPWRHSC                    YTHVGVELPLDFFKVGDLASVHDLATYISLLRGADKKQPAAAAADAGGVLAKVMDFVG                    RRRGGGALPWHDAAMIQMGGLVQTLGLI</aaseq>|
 
DNA = <dnaseqindica>3..1091#tggagccggcgccgcacccggtgctgaggggggaggtggcgcggtacggcgagctggtgggcgcgtgctacaaggcgttcgacctggacccggcgtcgcggaggtacctcaactgcaagtacgggagggagaggatgctggaggaggtcgggatgggcggcgccgggtacgaggtcacccgctacatctacgcggcggcggacgtcagcgtgccgaccatggagccgtcgacgagcgggcgcgggcggtggatcgggtacgtcgcggtgtccaccgacgagatgtcgcggcggctcgggcggcgcgacgtgctcgtctcgttccggggcacggtcacccccgccgagtggatggccaacctcatgagctcgctggaggcggcgcggctcgacccgtgcgacccgcgccccgacgtcaaggtggagtccgggttcctcagcctctacacctccgccgacaagacgtgccgcttcggcggcgccgggagctgccgggagcagctcctccgcgaggtgtcccgcctcgtcgccgcctactccggcggcggcgaggacgtcagcgtcacgctcgccggccacagcatgggcagcgcgctggcgctcctctccgcctacgacctcgccgagctcggcctcaaccgcgccgccccggtcaccgtcttctccttcggcgggccgagggtggggaacgcggcgttcaaggcgcgctgcgacgagctcggcgtcaaggcgctccgcgtcaccaacgtacacgacccgatcaccaagctccccggcgtcttcctcaacgaggccaccgccggcgtgctccgcccgtggcgccactcctgctacacccacgtcggcgtcgagctccccctcgacttcttcaaggtcggcgacctcgcctccgtccacgacctcgccacctacatctccctcctccgtggcgccgacaagaagcagcccgccgccgccgccgccgacgccggcggcgtgctcgccaaggtgatggacttcgtgggtcggcggcgcggcggcggcgcattgccgtggcacgacgcggcgatgatacagatgggcggcttggtgcagacgctcgggctaatctgacagagtcttaacccaccactgtcaagacggctaatcaagattaacagaccactaatcctcttcgacattttattcgagggttttatggtcgaatttattttttcttctttgatttgattctgtatagatagatcaaccatcatagagatatctcaaatcaaacacacacaaaaaagaaaaaaccccttttttttttgttc</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051640.2 RefSeq:Os01g0900400]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 1]]
 
[[Category:Chromosome 1]]
 

Latest revision as of 11:45, 15 December 2016

The rice Os01g0900400 was reported as eg1 in 2009 [1] by researchers from the China.

Annotated Information

Gene Symbol

  • Os01g0900400 <=> eg1


Function

  • EG1 reveals a novel pathway that regulates rice empty-glume fate and spikelet development.


Expression

  • EG1 is expressed strongly in inflorescence primordia and weakly in developing floral primordia. We also found that the floral meristem and organ identity gene OsLHS1 showed altered expression with respect to both pattern and levels in the eg1 mutant, and is probably responsible for the pleiotropic floral defects in eg1.


Labs working on this gene

  • The State Key Laboratory of Rice Biology, College of Life Sciences, Zhejiang University, Hangzhou, 310029 China,
  • Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences and National Center for Plant Gene Research, Beijing 100101, China,
  • The State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China, and
  • College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110161, China


References

  1. A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice


Structured Information