Difference between revisions of "Os11g0708400"

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(Created page with "{{JaponicaGene| GeneName = Os11g0708400| Description = Similar to CPRD49| Version = NM_001075094.1 GI:115486836 GeneID:4351232| Length = 2595 bp| Definition = Oryza sativ...")
 
 
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{{JaponicaGene|
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The rice gene Os11g0708400 was reported as '''''WDL1''''' in 2010<ref name="ref1" /> by researchers from Korea.
GeneName = Os11g0708400|
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==Annotated Information==
Description = Similar to CPRD49|
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===Gene Symbol===
Version = NM_001075094.1 GI:115486836 GeneID:4351232|
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*'''''Os11g0708400 <=> OsGELP112, WDL1
Length = 2595 bp|
 
Definition = Oryza sativa Japonica Group Os11g0708400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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===Function===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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* '''''WDL1''''' gene encodes a protein belonging to the SGNH subfamily, within the GDSL lipase superfamily.
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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* '''''WDL1''''' is involved in cutin organization, affecting depolymerizable components.
            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Mutation===
|
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* The '''''wilted dwarf and lethal 1 (wdl1)''''' muant is dwarf and die at seedling stage due to increased rates of water loss. Stomatal cells and pavement cells are smaller in the mutant, suggesting that WDL1 affects epidermal cell differentiation.
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
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===Expression ===
AP = Chromosome 11:30791671..30794265|
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* Although '''''WDL1''''' was expressed in whole plants, transcript levels were higher in the shoots and young panicles than in the calli and roots
CDS = 30791812..30791934,30792588..30792665,30793131..30793271,30793334..30793410,30793515..30793664<br>,30793761..30793974|
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===Sublocalization===
GCID = <gbrowseImage1>
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* The '''''WDL1–sGFP''''' signal coincided with the RFP signal driven by AtBIP–mRFP, indicating that WDL1 is an ER protein.
name=NC_008404:30791671..30794265
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===Evolution===
source=RiceChromosome11
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preset=GeneLocation
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You can also add sub-section(s) at will.
</gbrowseImage1>|
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==Labs working on this gene==
GSID = <gbrowseImage2>
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* Department of Life Science, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Republic of Korea
name=NC_008404:30791671..30794265
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* Crop Biotech Institute and Department of Plant Molecular Systems Biotech, Kyung Hee University, Yongin 446-701,
source=RiceChromosome11
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Korea
preset=GeneLocation
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* Institute of Cellular and Molecular Botany, University of Bonn, Kirschallee 1, 53115 Bonn, Germany
</gbrowseImage2>|
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* Division of Plant Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 702-701, Korea
CDNA = <cdnaseq>atgcttggttttgcgccggcaccaggccggccgctcttcgtgctcttcggttcctccatcgtccagttcagcttcagcaatggcggatggggcgctgcccttgcagacatctacgctcgcaaggctgatatccttctcagagggtatattggttggaactcaaggcgcgcccttcaagtcattgacaaaatttttcccaaggattcgcccgtgcaaccttctttggtaatagtttactttggtggcaatgattcggttgctgcccattcatccggccttggacctcatgtgccactagaggagtacatagacaacatgagaaagatcgcagaccacctgaagagcttgtctgagaagacccgtgtcatcttcctcagctgcccaccacttaacgaggagacgctccgaaaatcaaccagcactgtcctgagtgagatagtgcggacaaacgaaacttgccgcctatactccgaagcctgtgtatctctatgcaaagagatggacctgaaggtggttgatctttggaatgctatgcagaaacgggacgactgggcgacggcctgcttcacggatgggcttcatctgtctgaagaagggagcaagattgttgtggaagagatcctgaggatcctcaaggaggcagagtgggatccatgcctgcactggaaggcgatgccgacagagtttggggaggactcaccctatgatctcgtctcctccagcggccaatccaccgtcaacccctccgactggaccttccacaggactatccaatgggactga</cdnaseq>|
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==References==
AA = <aaseq>MLGFAPAPGRPLFVLFGSSIVQFSFSNGGWGAALADIYARKADI                    LLRGYIGWNSRRALQVIDKIFPKDSPVQPSLVIVYFGGNDSVAAHSSGLGPHVPLEEY                    IDNMRKIADHLKSLSEKTRVIFLSCPPLNEETLRKSTSTVLSEIVRTNETCRLYSEAC                    VSLCKEMDLKVVDLWNAMQKRDDWATACFTDGLHLSEEGSKIVVEEILRILKEAEWDP                    CLHWKAMPTEFGEDSPYDLVSSSGQSTVNPSDWTFHRTIQWD</aaseq>|
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<references>
DNA = <dnaseqindica>142..264#918..995#1461..1601#1664..1740#1845..1994#2091..2304#gttgtgcacagctcttgttctccattaatccagccgtgcgtgcagttgaggtccacctgctgctgctctctgtctgctcccatcgaacaaatcaagaaccaccctctccactctccaatccaatctcgaataggaagaaggatgcttggttttgcgccggcaccaggccggccgctcttcgtgctcttcggttcctccatcgtccagttcagcttcagcaatggcggatggggcgctgcccttgcagacatctacgctcgcaaggtctctctctgctctcccatccctccctgccacatcaactaactattttggtcctccaaatttttcatattagattgttcaattcctacccatctgccataggagattcgttttcttctcgcatcttgattcctcatgcctaggccaatgtaaatctagtctttttttttaatacaagagatgctttgtcttgttttcttgtaaggcttcgagttagtttgataggaacgaggaagtatgctatatctaaaggtatatactccggggcaactgatttcagtctgcccttgcttgggagtgggagggagatgttctttaaacaaactgctaaacctagggttacaagtgcctcaaaacatagggctcagcgaaacttcctttctatggccattggcggtcttaaacaactcatacgtctttcaagataaaaatgcttccttgtccgttgacttattgtaggccaggattttccgagcatctatgagtagttgcatctatcatgttcattttggcttgaatcagtgtcctgttcccaggtcgacccacccacaaataccctctgttttgcttgtgccattttcagcataatgtgtgtattaatcggtctcctactatactatactatacatttcactaatgctcaactcattcaggctgatatccttctcagagggtatattggttggaactcaaggcgcgcccttcaagtcattgacaaaatttttcccaaggtacgtatgggcatttttctcttgtccctaggaccagatcaagtggagtggatgatttaacttggttgggggtagttggtactgactgtggttgtacttcctgactaacatgcttgcttaggtcctcccttctaatctgatgattcttatcttagtgatatccccttcttttgttcattgttcatctaacaagaacaaatctggctctatgtttccgtgcttggaataggcaggttggctatcatttagtggctcagttgttgtatgatttatgttactcttcaaatgtgccagagaacaattttctggagtactttcagcatcaaatttctagatagtcttgagaatcattgtccagaattaatacattttatttactatgatgttattcattacgatttgcaggttcaaatttagctgactgttaccaaattacttactttgtaaactccgtttttgtcttaggattcgcccgtgcaaccttctttggtaatagtttactttggtggcaatgattcggttgctgcccattcatccggccttggacctcatgtgccactagaggagtacatagacaacatgagaaagatcgcagaccacctgaaggtacagaatgcaaattgcttgtaccgtttgtgaacttgcttgactgttgcctttatgttcagagcttgtctgagaagacccgtgtcatcttcctcagctgcccaccacttaacgaggagacgctccgaaaatcaaccaggtgcaaattagggataatcttaatttcttggctaggatctgttggttgatatttgaatggaaagtactagtatgattcaaatgttgtgcatataatccatgcagcactgtcctgagtgagatagtgcggacaaacgaaacttgccgcctatactccgaagcctgtgtatctctatgcaaagagatggacctgaaggtggttgatctttggaatgctatgcagaaacgggacgactgggcgacggcctgcttcacgtgagtgctgctgattgataattcatccatttcctgatcagtatcatatctatttggatcaattggtggtttgtttgtgaatgtgggtgggtgcagggatgggcttcatctgtctgaagaagggagcaagattgttgtggaagagatcctgaggatcctcaaggaggcagagtgggatccatgcctgcactggaaggcgatgccgacagagtttggggaggactcaccctatgatctcgtctcctccagcggccaatccaccgtcaacccctccgactggaccttccacaggactatccaatgggactgaccttccattcgtctcaatctcagtatctcatgatggagcatatacatgcatgctccaacgtgcaacattacatgcatgattcataattaagatccccttcggtcttactatatatgtaggggtctaatgctagctgatgacgaggggtcatggattaggcttcagctcgatcgagctgaaaaaaaatcagatttaggatgatattaactgctttgctccctgcctgctatatatcataagtgagacaatgcacatgattatctcgctatatactatgtgactcatttcgct</dnaseqindica>|
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* <ref name="ref1">
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001075094.1 RefSeq:Os11g0708400]|
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Frey N, Klotz J, Nick P. A kinesin with calponin-homology domain is involved
}}
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in premitotic nuclear migration. J Exp Bot. 2010 Jul;61(12):3423-37. doi:
[[Category:Genes]]
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10.1093/jxb/erq164. PubMed PMID: 20566563; PubMed Central PMCID: PMC2905203.
[[Category:Japonica mRNA]]
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[[Category:Oryza Sativa Japonica Group]]
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</ref>
[[Category:Japonica Genes]]
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</references>
[[Category:Japonica Chromosome 11]]
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[[Category:Chromosome 11]]
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==Structured Information==
 +
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 11]]

Latest revision as of 07:10, 20 December 2016

The rice gene Os11g0708400 was reported as WDL1 in 2010[1] by researchers from Korea.

Annotated Information

Gene Symbol

  • Os11g0708400 <=> OsGELP112, WDL1

Function

  • WDL1 gene encodes a protein belonging to the SGNH subfamily, within the GDSL lipase superfamily.
  • WDL1 is involved in cutin organization, affecting depolymerizable components.

Mutation

  • The wilted dwarf and lethal 1 (wdl1) muant is dwarf and die at seedling stage due to increased rates of water loss. Stomatal cells and pavement cells are smaller in the mutant, suggesting that WDL1 affects epidermal cell differentiation.

Expression

  • Although WDL1 was expressed in whole plants, transcript levels were higher in the shoots and young panicles than in the calli and roots

Sublocalization

  • The WDL1–sGFP signal coincided with the RFP signal driven by AtBIP–mRFP, indicating that WDL1 is an ER protein.

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Life Science, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Republic of Korea
  • Crop Biotech Institute and Department of Plant Molecular Systems Biotech, Kyung Hee University, Yongin 446-701,

Korea

  • Institute of Cellular and Molecular Botany, University of Bonn, Kirschallee 1, 53115 Bonn, Germany
  • Division of Plant Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu 702-701, Korea

References

  1. Frey N, Klotz J, Nick P. A kinesin with calponin-homology domain is involved in premitotic nuclear migration. J Exp Bot. 2010 Jul;61(12):3423-37. doi: 10.1093/jxb/erq164. PubMed PMID: 20566563; PubMed Central PMCID: PMC2905203.

Structured Information