Difference between revisions of "Os02g0274000"

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(Created page with "{{JaponicaGene| GeneName = Os02g0274000| Description = Conserved hypothetical protein| Version = NM_001053070.1 GI:115445510 GeneID:4328996| Length = 4191 bp| Definition ...")
 
 
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{{JaponicaGene|
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The rice gene Os02g0274000 was reported as '''''Rf2''''' in 2011<ref name="ref1" /> by researchers from Japan and Australia.
GeneName = Os02g0274000|
 
Description = Conserved hypothetical protein|
 
Version = NM_001053070.1 GI:115445510 GeneID:4328996|
 
Length = 4191 bp|
 
Definition = Oryza sativa Japonica Group Os02g0274000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os02g0274000 <=> Rf2, OsRf2
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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* '''''Rf2''''' encodes a protein consisting of 152 amino acids with a glycine-rich domain.
AP = Chromosome 2:10023011..10027201|
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* The fertility of cytoplasmic male sterility (CMS) plants is restored in the presence of a nuclear-encoded '''''fertility restorer (Rf)''''' gene. In Lead Rice-type CMS, discovered in the indica variety ‘Lead Rice’, fertility of the CMS plant is restored by the single nuclear-encoded gene '''''Rf2''''' in a gametophytic manner.
CDS = 10026557..10026644,10026729..10026961|
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===Mutation===
GCID = <gbrowseImage1>
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* Replacement of isoleucine by threonine at amino acid 78 of the RF2 protein was considered to be the cause of functional loss in the rf2 allele.
name=NC_008395:10023011..10027201
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===Expression ===
source=RiceChromosome02
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* Expression of '''''Rf2''''' mRNA was detected in developing and mature anthers.
preset=GeneLocation
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===Sublocalization===
</gbrowseImage1>|
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* An RF2–GFP fusion was shown to be targeted to mitochondria.
GSID = <gbrowseImage2>
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===Evolution===
name=NC_008395:10023011..10027201
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source=RiceChromosome02
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You can also add sub-section(s) at will.
preset=GeneLocation
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==Labs working on this gene==
</gbrowseImage2>|
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* Present address: Agricultural Research Institute, HOKUREN Federation of Agricultural Cooperatives, Higashi-5, Kita-15, Nagamura, Hokkaido 069-1317, Japan.
CDNA = <cdnaseq>caacagagcgtaagatgcaatgccactcagacccaaagtgctcagcggaaatcttcaactgcaaccgtcaaacgatctgaccccaaaggaaaaactcaggggccaaaattggatgatgggagcggtggttttcctccattccgtttcggcaaaggtggtggtggcggcggaggtggtggaggtggcagcaactacttcggtggattccttctcttcacttgtgtgttgctcctagattacctgaaggagtttgagaaaaacctgattgctcgaaggcaacgcgctggatatgatgcaaacaatgatatgttccaacaataa</cdnaseq>|
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* Present address: Australian Research Council, Centre of Excellence in Computer Systems Biology, University of Western Australia, 35 Stirling Highway, Crawley 6009, WA, Australia.
AA = <aaseq>QQSVRCNATQTQSAQRKSSTATVKRSDPKGKTQGPKLDDGSGGF                    PPFRFGKGGGGGGGGGGGSNYFGGFLLFTCVLLLDYLKEFEKNLIARRQRAGYDANND                    MFQQ</aaseq>|
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==References==
DNA = <dnaseqindica>3547..3634#3719..3951#cgcctcctccttcgccgccgcctacgacgaggctttcctcctctctcccatcgccttcctcctctcctccctttcctcccaggcggcggcggcgccctcagcagcaggatccaccctcgcgccaccccaggccggccgatccgatccccaacgcgatcttgtggggggcgaggcgcggaaaggtggccgccgaatcgtcgcgtggttggttggttcctaggtgagtgagggggtcaagggttattagagatttcatgatttcatcccgtgggcatgtcatcctgcctgttggagagtttgataaagacgtggtttcgatacttagttggggggggggggaataatttgtgattttagtttggagaatagggtttaatctgccgcagcggttctttgtttttgggaggtaacctgtacaaagatcatgctaatccccttcatgatcatttttttttggttattgggaaattttcctgaaccgtgctccctgtagaaccctgcaaaaacaggatcgtgttgacggcagtggttagcattgttaaaaattggggatcatggttactgttatagatttttttttgttttttacttatgggggtaacactatctgttggataaaatccatcatcttgatgattgttagctgcccaattgtttaaaactaatgggtgtcgggacgattgaggtgttgagcatatggggtgggatctcgactacacttttaaaagcactatggtgatatcggagttgtatgacaagtatcatacttttcaaacctgtgttgtgacttaatccctccgttccatattataagactttccagcattacccacgttcatatagatgttaatgatgtgtctagattcattaacatctatatgaatgtgggtaatgctagaaagtcttataatatgaaacggaggaagtattatttttatatgcatgataacattatccctgagcatactgtgttgtttctcaagcagtcaaatcaggtttgagatgccatgtatttatgcactctgtagtaaatagttatttcattttgcaatcatttggcatggcatttcatttcttttcatatgtgacaatgttatgttgcttgattgtagatcttaaaagtgtcctccatgtcaacacttgtcacgtgctcactgccaggggctgtaaccactcatgcatcaaccaggagatttggaggtaaataattggctttaacatttatatttgtttgctttatagagtaattcatgaattgctgtcctcaacattgtttcatgatttcacaatgtttgtctctcccttactcgttgttaagtgtctttggccctcttctctttgcatcgtgacagttaaaaaaattccacggattgagaatatgtaatacctcattacttcttaaattcatctgtgtttgttgacttgctctcaattttgatgtcctaatagtgcactaagaaaatgtaggtatgtaagcatccatttggactatgcaatatagtatacaaatatgacaagtagcccgaaacctgtctgcctgatccttttgctccttttttttagagcacccttgagtttatgttaagagggttctttagggaaattggtaaactgtttcattttccaaatcataagttcacataacacgtggtttgggaattatgggtcgaaatcacatcattagggcctgtttggcacagctctagctccagctccacccctcctggagctggagctcagccaaacagtttcagctccactaatactgggagtggagttgggtggagctctctcacaaaatgtactagagttgtggagctgggtttaggcagctccacaactccactctagactcaactcctggagtaatatttaggagttggagctgtaccaaacaggcccttagtctcctgatcaggcaccttgtgatcttgttgatcctcttttgccaaacaatgtttcattatgtactaatttttcattataccttctctgggcaggttcacaatttcagacatctcaagctagctgcatctcatttaaaagggaagtgtctgctaaagcagtattaagagtaagttggaatatatcatagattcatatctacctcaatcttcctataaacaaaattaagtgttcaattcctgcaaacaaatttactattttctgtttggttagcttattgtgagttcatgacaataaggcatttgatcaataaccaaattggcatgtatcaccctctttttattatatatgattatatatagattctatagaaaaattgaattaggagttactgttactccctccgacccaaaatatgacaacttaggaccagattggacacccctgtccaaattcgtagtactaggatatgtccaattctgtcctagttgctatattttgggactgaggagtatgaactatgaaatattcatgttaaaatggtttagttcaaaatacagtagataaggattttaccatacttgattggtttattggttatacccttcctagctagtactaatcgtagtgctcaataggtgcatatctcatgggccatggcatgtgcatgctgcatacatttaaagataaggtgctttgaattgttaattagtagataaaactgcatcagtaccactacaattttgatggtatcaacaaaacatttcagtatttcacctctaatatataccagcaagttggtctaaaaattcgaaatacctcttctgttacatttgaaggcaacggtgttagataagggtgatttattgattttgtccttacgtgaatattaaattgttgcactaccaaatctcacatctctccagcagccagtagtagtggccggcggcatcattagtgtcgctggaggtgggcaacaagttaatggagcaaagagacgtgggcggtcaaggcatcagagcgtctgcagcctggccgagacccccacctctgagcggcctcaccatgagggtcagtgtgagcagtgtggctgggctgagagcattggctgtggatgcatacaaccaggctgaggactgcactgccaggtggcctcagatgttgacacaggtcctaggtggagcctaatgagatcaagatcataagaacatgcttttcctggtttcttgcttccctcttagcacggtagattgagcagccaagccaagtagtgtcacctccatgatgaagacagcaagcagtgggtattgcagtcattctgcgtggtaaaaaaaaggggtcaaaaccgaaataggaacaaagcatgacaggggatgtaatgttctgatgttatttattgggatcactgaaactctggtggtatagatgcagttttttcttaatagtagtactaaaagaagcaatattatccctggtacatggtcaatctcaatgattaatatatgttctgaattattcatgatgctttacctccagttactgaacttcaaaactgatgaaagggaaaatgctagcttgcttatctgcatacttcactgtcagatcttctcattgactgcttttttgtgcgaacgctattgacaacagagcgtaagatgcaatgccactcagacccaaagtgctcagcggaaatcttcaactgcaaccgtcaaacgatctgaccccaaaggtagatctgcctctaattgaattttattctataggtggcaggaacgcaatcgcttaatttcactttctgtcctgtgactttcaggaaaaactcaggggccaaaattggatgatgggagcggtggttttcctccattccgtttcggcaaaggtggtggtggcggcggaggtggtggaggtggcagcaactacttcggtggattccttctcttcacttgtgtgttgctcctagattacctgaaggagtttgagaaaaacctgattgctcgaaggcaacgcgctggatatgatgcaaacaatgatatgttccaacaataattgtttaacttgttagcactaccctatctgttgatctgtaaaactctacaagaattcctgccgtgcatgtttatttcgttcacattacccgtagtaaatcatggcttgacctcaccgagaggaagctcagatgcactggacacagctactggaaatgtgagttcagtgctgtggtacatccaaatggaccgtattattgcaggtgttgaaattggaatgctttttggaatgttgaatcgc</dnaseqindica>|
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<references>
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053070.1 RefSeq:Os02g0274000]|
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* <ref name="ref1">
}}
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Itabashi E, Iwata N, Fujii S, et al. The fertility restorer gene, Rf2, for Lead Rice‐type cytoplasmic male sterility of rice encodes a mitochondrial glycine‐rich protein[J]. The plant journal, 2011, 65(3): 359-367.
[[Category:Genes]]
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</ref>
[[Category:Japonica mRNA]]
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</references>
[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 2]]
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==Structured Information==
[[Category:Chromosome 2]]
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 11:32, 20 December 2016

The rice gene Os02g0274000 was reported as Rf2 in 2011[1] by researchers from Japan and Australia.

Annotated Information

Gene Symbol

  • Os02g0274000 <=> Rf2, OsRf2

Function

  • Rf2 encodes a protein consisting of 152 amino acids with a glycine-rich domain.
  • The fertility of cytoplasmic male sterility (CMS) plants is restored in the presence of a nuclear-encoded fertility restorer (Rf) gene. In Lead Rice-type CMS, discovered in the indica variety ‘Lead Rice’, fertility of the CMS plant is restored by the single nuclear-encoded gene Rf2 in a gametophytic manner.

Mutation

  • Replacement of isoleucine by threonine at amino acid 78 of the RF2 protein was considered to be the cause of functional loss in the rf2 allele.

Expression

  • Expression of Rf2 mRNA was detected in developing and mature anthers.

Sublocalization

  • An RF2–GFP fusion was shown to be targeted to mitochondria.

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Present address: Agricultural Research Institute, HOKUREN Federation of Agricultural Cooperatives, Higashi-5, Kita-15, Nagamura, Hokkaido 069-1317, Japan.
  • Present address: Australian Research Council, Centre of Excellence in Computer Systems Biology, University of Western Australia, 35 Stirling Highway, Crawley 6009, WA, Australia.

References

  1. Itabashi E, Iwata N, Fujii S, et al. The fertility restorer gene, Rf2, for Lead Rice‐type cytoplasmic male sterility of rice encodes a mitochondrial glycine‐rich protein[J]. The plant journal, 2011, 65(3): 359-367.


Structured Information