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| − | {{JaponicaGene|
| + | The rice gene Os01g0357100 was reported as '''''NIR''''' in 2005<ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os01g0357100|
| |
| − | Description = Ferredoxin-nitrite reductase (EC 1.7.7.1)|
| |
| − | Version = NM_001049543.1 GI:115436499 GeneID:4326014|
| |
| − | Length = 6542 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os01g0357100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os01g0357100 <=> PSR1, NiR, OsNiR |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | * '''''NIR''''' encodes ferredoxin-nitrite reductase (NiR) that determines regeneration ability in rice. Molecular analyses revealed that the poor regeneration ability of Koshihikari is caused by lower expression than in Kasalath and the specific activity of NiR. |
| − | AP = Chromosome 1:14589572..14596113|
| + | |
| − | CDS = 14590086..14590494,14594340..14594462,14594469..14594694,14594797..14595085,14595179..14595916<br>|
| + | ===Expression === |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008394:14589572..14596113
| + | ===Evolution=== |
| − | source=RiceChromosome01
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage1>| | + | |
| − | GSID = <gbrowseImage2>
| + | ==Labs working on this gene== |
| − | name=NC_008394:14589572..14596113
| + | * Honda Research Institute Japan, 2-1-4 Kazusa-Kamatari, Kisarazu-shi, Chiba 292-0818, Japan; and ‡Bioscience and Biotechnology Center, Nagoya University, Nagoya 464-8601, Japan |
| − | source=RiceChromosome01
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage2>| | + | * <ref name="ref1"> |
| − | CDNA = <cdnaseq>atggcctcctccgcctccctgcagcgcttcctccccccgtacccccacgcggcagcatcccgctgccgccctcccggcgtccgcgcccgccccgtgcagtcgtcgacggtgtccgcaccgtcctcctcgactccggcggcggacgaggccgtgtcggcggagcggctggagccgcgggtggagcagcgggagggccggtactgggtgctcaaggagaagtaccggacggggctgaacccgcaggagaaggtgaagctggggaaggagcccatgtcattgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccgacaagctctccaaggaggacatcgacgtgcggctcaagtggctcggcctcttccaccgccgcaagcatcagtatgggcggttcatgatgcggctgaagctgccaaacggtgtgacgacgagcgagcagacgaggtacctggcgagcgtgatcgaggcgtacggcaaggagggctgcgccgacgtgacaacccgccggcagatccgcggcgtcacgctccccgacgtgccggccatcctcgacgggctcaacgccgtcggcctcaccagcctccagagcggcatggacaacgtccgcaaccccgtcggcaacccgctcgccggcatcgaccccgacgagatcgtcgacacgcgatcctacaccaacctcctctcctcctacatcaccagcaacttccagggcaaccccaccatcaccaacctgccgaggaagtggaacgtgtgcgtgatcgggtcgcacgatctgtacgagcacccacacatcaacgacctcgcgtacatgccggcggtgaagggcggcaagttcgggttcaacctcctcgtcggcgggttcataagccccaagaggtgggaggaggcgctgccgctcgacgcctgggtccccggcgacgacatcatcccggtgtgcaaggccgttctcgaggcgtaccgcgacctcggcaccaggggcaaccgccagaagacccgcatgatgtggctcatcgacgaacttggaatggaggcttttcggtcggaggtggagaagaggatgccgaacggcgtgctggagcgcgcggcgccggaggacctcatcgacaagaaatggcagaggagggactacctcggcgtgcacccgcagaagcaggaagggatgtcctacgtcggcctgcacgtgcccgtcggccgggtgcaggcggcggacatgttcgagctcgcacgcctcgccgacgagtacggctccggcgagctccgcctcaccgtggagcagaacatcgtgatcccgaacgtcaagaacgagaaggtggaggcgctgctctccgagccgctgcttcagaagttctccccgcagccgtcgctgctgctcaagggcctcgtcgcgtgcaccggcaaccagttctgcggccaggccatcatcgagacgaagcagcgggcgctgctggtgacgtcgcaggtggagaagctcgtgtcggtgccccgggcggtgcggatgcactggaccggctgccccaacagctgcggccaggtgcaggtcgccgacatcggcttcatgggctgcctcaccaaggacagcgccggcaagatcgttgaggcggccgacatcttcgtcggcggccgcgtcggcagcgactcgcacctcgccggcgcgtacaagaagtccgtgccgtgcgacgagctggcgccgatcgtcgccgacatcctggtcgagcggttcggggccgtgcggagggagagggaggaggacgaggagtag</cdnaseq>|
| + | Nishimura A, Ashikari M, Lin S, et al. Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(33): 11940-11944. |
| − | AA = <aaseq>MASSASLQRFLPPYPHAAASRCRPPGVRARPVQSSTVSAPSSST PAADEAVSAERLEPRVEQREGRYWVLKEKYRTGLNPQEKVKLGKEPMSLFMEGGIKEL AKMPMEEIEADKLSKEDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSEQTRYLA SVIEAYGKEGCADVTTRRQIRGVTLPDVPAILDGLNAVGLTSLQSGMDNVRNPVGNPL AGIDPDEIVDTRSYTNLLSSYITSNFQGNPTITNLPRKWNVCVIGSHDLYEHPHINDL AYMPAVKGGKFGFNLLVGGFISPKRWEEALPLDAWVPGDDIIPVCKAVLEAYRDLGTR GNRQKTRMMWLIDELGMEAFRSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQK QEGMSYVGLHVPVGRVQAADMFELARLADEYGSGELRLTVEQNIVIPNVKNEKVEALL SEPLLQKFSPQPSLLLKGLVACTGNQFCGQAIIETKQRALLVTSQVEKLVSVPRAVRM HWTGCPNSCGQVQVADIGFMGCLTKDSAGKIVEAADIFVGGRVGSDSHLAGAYKKSVP CDELAPIVADILVERFGAVRREREEDEE</aaseq>|
| + | </ref> |
| − | DNA = <dnaseqindica>515..923#4769..4891#4898..5123#5226..5514#5608..6345#gaaccttatctccttctctctcgtcgctttctgcgtctccccgtctctccttcgccaacagccgagaagaggcagagagagcgccgccccccgtccctctctctccctctcgtcctcgcccccatccctctcgtctttcccttgccggcagcagaggaggcggcagcgacggcttcagctgctcccacgggccggatcgggcagtggcggtggcgtcggcggcttccgctggcgaatccggcgggtggatacaaatcagtgttccgataggtaaaaccctgctctcagcatctgcccttttgaattcgccaagagccagcatctgcccttttgaattcgccaagggccagcatctgcccatttgattttgaattcgccaagagccagcaacagcgcccccgcgccccctccctcctccgcaataaacagccacacgcgccgcccccatgtccaccctcatcgccacagcgcaccaccaccaccaccaccaccaccaccaccaccgtctccagccatggcctcctccgcctccctgcagcgcttcctccccccgtacccccacgcggcagcatcccgctgccgccctcccggcgtccgcgcccgccccgtgcagtcgtcgacggtgtccgcaccgtcctcctcgactccggcggcggacgaggccgtgtcggcggagcggctggagccgcgggtggagcagcgggagggccggtactgggtgctcaaggagaagtaccggacggggctgaacccgcaggagaaggtgaagctggggaaggagcccatgtcattgttcatggagggcggcatcaaggagctcgccaagatgcccatggaggagatcgaggccgacaagctctccaaggaggacatcgacgtgcggctcaagtggctcggcctcttccaccgccgcaagcatcagtgtatgcctctcttctcttgctcctctgatcaacacattttcttgctttcgttcggttatttgtcgcgccgaggaagttaattcgccaagatattctgcagttttttttctcgatgcacattcagcaacctaattaagactgattaagttgctgtgatttttatagcttaattacggtctcgtgggtaatgactatttatattgagtaaacatggttacctttgatccaatcacttcacctccatgtgccatatatagccacaggctctaccaagtaacactagtaatatgcctgtgatacgccacggtggcataataaatcattaaattttattataatcaaattaaggatcctaaaattggtccaattgggtgttaattcgatgcaggtcatataaaaatatattttaggcaaggtgcaattcaagagcatcaaccattatatccaatcactttaatatatatttgaagataacatatgtcggaaaaaaaatgatggagagctatttcattaacttgtgagcataaacagatcaccagatgatgccaccataagtcccgccacagtaagtgatgcagctcatcttgccctaggcgttcggtctaaccagtagatagaaagagtacaacatagatcgaatgaaaaaaaaaatctccagaagaaagctcaaccacattgagtaaattagagcaacaatcaaatcgagtcagcatatcgttatgttagcagaaccaatcaccacaatttgtttctcctctttatctaagtgttttgccaggttaaaagcatatatcactatgttccaagcaaacatcggcaatggacatgtcaaaaataaatgatcaattgtttctttgagtacaaaattgacaatggacactatgttcctttgttagaattctatttgtcagggtaggatgtagaaaaacttaacttttagaggaagcttaaatatccggcataaacttgctttttcagcgctctataaaataattcaacagtgaattgtccatcttttctaagtgctccaaaagacactaagttgaaaaaccaggtgaaccaacagattgatccacaaaatcttattattagattattcacttaaaagcctgtctttatttcaaacatataaaaacagaagttattaatcagggaagcgcttatggcagcctgagcgaaccagtgatagcaagtggtgaaaacagtaaataggatacataaaaattatacaaggtttctactgtttatcaaaaaaaaatatttgaaaacagtaaataggatacataatcgacttccaacttgtccttatcataacatccagaatcacaacaagaattgcaacgaatacatagtcgacttgagctaagaagtcacaagacctgtcaaagtaagctgcccttgatcttgaagtgaaaggcatattttattgtcttccttggcaaacagatatcactgtcttcagcagttcagttagataatccaagatttctcacggagaagagcatatcactcgcatcagtgttgtgccctccaaatactgagataaactgaattttgttctctttgaagcatctgcaggcattaacaattataatactttacaaagtttcattgggtctaaactattgtttgcacatcatatatatgcccagaactttttagcatgatacaagggtcctgttcataactcatgcctaaatctgacaaatttgtcaaacgacaatataagtcgaattataatgcgttttagaattgacgccaaaacttttgctagcgtaagtaactcttccacctcccagcatgcatacaaccaacaagctaaacttttgttcaaaaaaatgtacatttatttccttgaacacagcctttgtagaatatgattaaaaactcatggatgaatgaaataatgtaaaagaatggtcaaaatgatgaatagtacaagaagcaactgtgaacatttcacctttacctgactgttcgcaagaaggccacgtggcagaaaagccagaaatgcaagaagcttccctaattgatacaccatcaagaaatcaatggactcaacaccagcgtctgcccagacaaaatgaatgcaggcacctaaaatatagaaccattgacttttcaacactgaattatataacctgaatatcttgtttttttaacacatctgacaaaatcagtgcattctgttccatatagatgtatgcatagctcccatatgttagttgatcgatgagcatgcaaactatacacaccttacgttactccctctgtcaaaaaaaatataagcttgtctagatacatagctacaaatgcttatatttttggattctcttaaagctgtagaaacttttatcgccccgccatggcaagtcgagatgccatccccaatgaaagcccccacacaggtttcatgccctgctgcacaatattgagcaaccaaaaatataataatatttgtgtcagaatttgaatcaaccttacagatactgggtggccagaaaatctagtccaagtaatatcctgaaaaatagcaactggcaaatactaaaggcagtgaagagtttcctttagatcagatgataaaaaaaaatcatatgttcaatagcaataatcactcacattttttttgctgtttagaatttagataattagtagttaaacttctatagcttgcgtagctaagatcaatggtgattattagttgaaaaaataatcaaatcatcaaactgaggagacttatacctgccataagttctgaaatttcaatgatcctagtcaatatttactgtatatatagaattaggtccaaaagatgatacttacaattaaggatgttgtattgatcggttcataactcaagcttctatttatcattaatcaaaagctggatcattcatgcatatacctttgccgcactcaacgtagcagctcggagtcttctttgttcagaagcgaggaaggagtcaacaaataagtactgcaatgttaaacaaaccgacatatcaaatcccaaattaagaatgcatgatttattaatacaggaaatatatgatcaagtcccaaaaagtgagtcatgttatgtacactcagtcatcaatttcaataagaatattaacttgctcattggtatatggatttgattatgacataatttgacaatacatttacagaataaacttgcagtgctgtgagcatatgttactaacatgtaaggaccttgttttgctctgttcaatactcatgttgatcttgatctgtgtccacatatacctaaatgaaatgaaatcaaagaatgaggtttgtaggagtggagttggtgaattatagggtagataatgtcggcacaaccgtttgataagtagtacgagtactttatttggcgccaccgcgccagcatcagatgtgtggcctttgcactgattgaatccaaaagaaaaaaaaagtcgttttggtcccacacaattctacttcatctgcaggatgtacagaaggttacatatctattctgttctatgctctgtttacatttatatttatagtactaggttgaaagggctcacttggtggctgtcattggttggctggtgcggtatattactaataggttttttaatggcatatatgttcttaaaataaaccagaaaagcaaaagatcaactatcttagccacaccaatgaaatggaatatactgaactgtcacggctaaaattctcttcagtcacctggcccaactggagccgtgggctcgtcgtcttttctaaacatgtactagtattttgggggcccacagtgaatttggcccaaaatgctgacagccgctctacggctctacgctgtgcagatgggcggttcatgatgcggctgaagctgccaaacggtgtgacgacgagcgagcagacgaggtacctggcgagcgtgatcgaggcgtacggcaaggagggctgcgccgacgtgacaacccgccagaactggcagatccgcggcgtcacgctccccgacgtgccggccatcctcgacgggctcaacgccgtcggcctcaccagcctccagagcggcatggacaacgtccgcaaccccgtcggcaacccgctcgccggcatcgaccccgacgagatcgtcgacacgcgatcctacaccaacctcctctcctcctacatcaccagcaacttccagggcaaccccaccatcaccaacctgtgagtgatcgaatcaaattgatcatgctctgtgctgtgctgtttcgtgtcgtctctgacgacatgtttgttgaatttgttgttgctgcgtgctgttggcaggccgaggaagtggaacgtgtgcgtgatcgggtcgcacgatctgtacgagcacccacacatcaacgacctcgcgtacatgccggcggtgaagggcggcaagttcgggttcaacctcctcgtcggcgggttcataagccccaagaggtgggaggaggcgctgccgctcgacgcctgggtccccggcgacgacatcatcccggtgtgcaaggccgttctcgaggcgtaccgcgacctcggcaccaggggcaaccgccagaagacccgcatgatgtggctcatcgacgaacttgtgaaccatttttttctccattcatccacgccattgactgaattacgtatgtcccaatgttcttatcagttaattgcggtgttggcattgcagggaatggaggcttttcggtcggaggtggagaagaggatgccgaacggcgtgctggagcgcgcggcgccggaggacctcatcgacaagaaatggcagaggagggactacctcggcgtgcacccgcagaagcaggaagggatgtcctacgtcggcctgcacgtgcccgtcggccgggtgcaggcggcggacatgttcgagctcgcacgcctcgccgacgagtacggctccggcgagctccgcctcaccgtggagcagaacatcgtgatcccgaacgtcaagaacgagaaggtggaggcgctgctctccgagccgctgcttcagaagttctccccgcagccgtcgctgctgctcaagggcctcgtcgcgtgcaccggcaaccagttctgcggccaggccatcatcgagacgaagcagcgggcgctgctggtgacgtcgcaggtggagaagctcgtgtcggtgccccgggcggtgcggatgcactggaccggctgccccaacagctgcggccaggtgcaggtcgccgacatcggcttcatgggctgcctcaccaaggacagcgccggcaagatcgttgaggcggccgacatcttcgtcggcggccgcgtcggcagcgactcgcacctcgccggcgcgtacaagaagtccgtgccgtgcgacgagctggcgccgatcgtcgccgacatcctggtcgagcggttcggggccgtgcggagggagagggaggaggacgaggagtaggaacacagactggggtgttttgcttgctccggtgatctctcgccgtccttgtaaagtagacgacaatatgccttcgcccatggcacgcttgtactgtcacgttttggtttgatcttgtagcccaaaagttgtgttcattctcgttacagtcttacagaggatgattgattgataaataaagaagaaacagattctgc</dnaseqindica>|
| + | </references> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049543.1 RefSeq:Os01g0357100]|
| + | |
| − | }}
| + | |
| − | [[Category:Genes]] | + | ==Structured Information== |
| − | [[Category:Japonica mRNA]]
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
| |
| − | [[Category:Chromosome 1]]
| |
