Difference between revisions of "Os01g0513900"

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Please input one-sentence summary here.
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The rice '''Os01g0513900''' was reported as ''' dbs1''' in 2005 <ref name="ref1" /> by researchers from the Japan.  
 
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<br>
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''Os01g0513900 <=> dbs1'''
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<br>
 
===Function===
 
===Function===
Please input function information here.
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*'''dbs1'''mutation causes a severe defect in DBS1 function but does not completely shut it down. We discuss the leaky phenotype of dbs1 under the restricted functioning of OsNACK.
 
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<br>
===Expression===
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===Mutant===
Please input expression information here.
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*'''DBS1''' is involved in the growth and development of organs but not in organ initiation or organogenesis. Positional cloning of '''DBS1''' revealed that it encoded a NACK-type kinesin-like protein (OsNACK), homologous to the essential components of a mitogen-activated protein kinase cascade during plant cytokinesis. A BLAST search indicated that DBS1 was the only gene encoding the '''OsNACK'''-type protein in the rice genome, and the dbs1 mutant produced only small amounts of the translatable '''DBS1''' mRNA.
 
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<br>
===Evolution===
 
Please input evolution information here.
 
 
 
You can also add sub-section(s) at will.
 
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, 464-8601 Japan
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<br>
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==References==
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<references>
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<ref name="ref1">
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The Rice Mutant dwarf bamboo shoot 1: A Leaky Mutant of the NACK-type Kinesin-like Gene Can Initiate Organ Primordia but not Organ Development
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</ref>
  
==References==
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</references>
Please input cited references here.
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<br>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]
GeneName = Os01g0513900|
 
Description = Similar to Kinesin heavy chain (Fragment)|
 
Version = NM_001049721.1 GI:115436997 GeneID:4323990|
 
Length = 6906 bp|
 
Definition = Oryza sativa Japonica Group Os01g0513900, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
 
AP = Chromosome 1:19807783..19814688|
 
CDS = 19809131..19809377,19809532..19809621,19809707..19809807,19809909..19810022,19810116..19810197<br>,19810327..19810394,19810482..19810541,19810620..19810744,19811398..19811596<br>,19811677..19811808,19811887..19811979,19812095..19812979,19813074..19813399<br>,19813738..19814080|
 
GCID = <gbrowseImage1>
 
name=NC_008394:19807783..19814688
 
source=RiceChromosome01
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008394:19807783..19814688
 
source=RiceChromosome01
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atgggtgtatcaagacctccaagcacccctgcatcaaagattgagcgcacaccgatgtcgaccccaacccctggtggcagcactagggtcaaggaggagaagatttttgtcacagtgagggtgcgaccattgagcaagaaagaactggccttgaaggatcaggtggcatgggagtgcgatgataaccagacaattttgtacaagggccccccacaggatcgggctgcacccacctcttacactttcgacaaggtgtttggaccagcttcccagacagaagtggtgtatgaagagggagctaaggatgttgctatgtctgcattgacaggcattaatgccaccatttttgcctatggtcaaaccagcagtggtaagacattcaccatgagaggcgtcacagagagtgctgtaaatgatatatacaggcacatagaaaatactcctgagagggactttatcatcaagatatctgctatggaaatttacaatgagattgtgaaggatcttctacgacctgagtctaccaatcttcgcttgttagatgatcctgagaaaggaacaattgtagaaaaactggaagaagaaattgccaaggatagccaacatcttaggcatctaatcagtatttgtgaagaacaaagacaggttggggagactgcactaaatgacaccagttcacgttcccaccagatcattaggctgacagttgagagtaggctccgtgaagtgtcaggatgtgttaaatcttttgtggctaatctgaattttgttgatcttgctggaagtgaacgagctgcacaaacacatgcagttggcgcaagactgaaagaaggctgccatataaatcgcagcttactgactcttactactgtcatcagaaagctaagctcggataaaagaagtggacacataccctatcgagactcgaagttgacacgcattctccagctttctttgggtggaaatgcaagaacagccatcatctgtaccatgagtccagcgcaaacacatgtagaacaatctagaaatactctattctttgcaacctgtgccaaggaggttacgaataatgcaaaagttaatatggtggtatcagataagcaattggtgaagcacctacagatggaagttgctagactcgaagctgagctgagaacccctgatcgtgcctcctcttctgagatcattataatggaaagggacaggaagattagacagatggaaaaagaaatggaggaactcaagaagcaaagagacaatgcacagttgaaacttgaagaattacagaagaagatgggtgataatcagccaggatggaatccttttgactcaccacaaaggacacggaaatgcctcacatattctggatcactacagccaagtaacaaaatgaagatacggagctcgattagacaatcagccactgctccatttatgttaaagcatgaaattcgcaagcttgagcagctacaacagcagcttgaggttgaggctaaccgagctattgaagtactgcacaaagaagtcgaatgccataaacatggcaatcaagatgcagcagaaactattgctaaactacaggctgaaatcagggggatgcaatctgtcagatctgacagagatgttgacatgatcacagatgaaggaaatggatctgatttgaaagaagaaattagtagacttcatatgcaagacaatgatattgcaaaacttgaggctaaactagaaaatgtacagaggtctattgatagattggtgatgtcacttccaaatgttggcacacaatgtaacgagactacaccaaagtccaacagagcaaagaagaagaagaggatgcttcttccactgggcgtgagcaacataaacagaccaaatctgataagagcaccatgctctcccctctcttctagtaggcctttagagccagaagttgagaatagggctccagagggtgacactgtgtctcatgaaggttcagaaagggctactcctactaagagtgaagacactggagatgtatcatcgcgtgatgaaaccccacgctataggcgatccagctcagtgaacatgaaaaagatgcagaagatgttccaaaatgctgctgaggagaatgttagaaatatccgggcttatgtcactgaactgaaggagagagttgcaaaacttcaataccaaaagcagctgcttgtctgtcaggtcttggagttggaatcgaatgaaggcaagacaaatgacatggaagaagattcagaggaaaatgcaggatctctacaggatggtcctgattcatgggacagattatttaaggagcagatgcagcacattatccaactgtgggatctctgtcatgtatcaatcatacacaggacccagttctacttattattcaggggggatagggctgatcagatatatattgaagtcgaagttagaagactgacatggttgcaacagcattttgctgaggtgggcgatgcaagtcctgcagctggtgatgactccacaatttctttagcctcaagtatcaaggcattgaggaatgagcgagaattcctcgcgagaaggatgggctcaaggctgacagaagaagagcgagagcgcctcttcatcaaatggcaggtgcccctggaggcgaagcagcggaagctccagcttgtgaacaggctctggacagaccccaatgaccaagctcacattgatgagagcgccgatatagtggccaggctggttggtttctgtgagggtggtaacatcagcaaggagatgtttgagctcaattttgcagtccctgcaagtaggaagccatggctgatgggttggcagcccatttcaaacatgatcagggagaagacacaactttggtaa</cdnaseq>|
 
AA = <aaseq>MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPL                    SKKELALKDQVAWECDDNQTILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKD                    VAMSALTGINATIFAYGQTSSGKTFTMRGVTESAVNDIYRHIENTPERDFIIKISAME                    IYNEIVKDLLRPESTNLRLLDDPEKGTIVEKLEEEIAKDSQHLRHLISICEEQRQVGE                    TALNDTSSRSHQIIRLTVESRLREVSGCVKSFVANLNFVDLAGSERAAQTHAVGARLK                    EGCHINRSLLTLTTVIRKLSSDKRSGHIPYRDSKLTRILQLSLGGNARTAIICTMSPA                    QTHVEQSRNTLFFATCAKEVTNNAKVNMVVSDKQLVKHLQMEVARLEAELRTPDRASS                    SEIIIMERDRKIRQMEKEMEELKKQRDNAQLKLEELQKKMGDNQPGWNPFDSPQRTRK                    CLTYSGSLQPSNKMKIRSSIRQSATAPFMLKHEIRKLEQLQQQLEVEANRAIEVLHKE                    VECHKHGNQDAAETIAKLQAEIRGMQSVRSDRDVDMITDEGNGSDLKEEISRLHMQDN                    DIAKLEAKLENVQRSIDRLVMSLPNVGTQCNETTPKSNRAKKKKRMLLPLGVSNINRP                    NLIRAPCSPLSSSRPLEPEVENRAPEGDTVSHEGSERATPTKSEDTGDVSSRDETPRY                    RRSSSVNMKKMQKMFQNAAEENVRNIRAYVTELKERVAKLQYQKQLLVCQVLELESNE                    GKTNDMEEDSEENAGSLQDGPDSWDRLFKEQMQHIIQLWDLCHVSIIHRTQFYLLFRG                    DRADQIYIEVEVRRLTWLQQHFAEVGDASPAAGDDSTISLASSIKALRNEREFLARRM                    GSRLTEEERERLFIKWQVPLEAKQRKLQLVNRLWTDPNDQAHIDESADIVARLVGFCE                    GGNISKEMFELNFAVPASRKPWLMGWQPISNMIREKTQLW</aaseq>|
 
DNA = <dnaseqindica>1349..1595#1750..1839#1925..2025#2127..2240#2334..2415#2545..2612#2700..2759#2838..2962#3616..3814#3895..4026#4105..4197#4313..5197#5292..5617#5956..6298#ggagagaattcaaactgtactacgtagtagtactagcgctagcactagcgagcggtggttgagcggcgcatcgcacgcgccgcccttgaccagcgacggcgagaagctcctccgcctccgcctcctcgtcgtcgggcgcgcgcccaccgccggcggcggctctcggcggcagcaggcagcggcagtggcctcgatcggcgggttgcgcggtcggatccccaatccccgggctgcgctggtgagtggttttcctcagctgcttctgcttgtccccgtgcgtctccctctcttccgagccccctggttctgctctgcctgcggccggcgccgttttcccgccgggcccgacggagtagccgagaggtggtgagtccgtaaggagggggggtgcagatgctggcggcggcggaaccggccgatctgccgctgtggcctcccgtgcgttcgcgcggcgcggcggatggagaacggaagttggtcgggtttgccgctcggaggttacagggcgggttcgtccatgaaaggaatgctgtttattttggcgctaactcgtggaattttttgtttgtgaactcagtttaccagattgcaatttccatacatgaatatacttgctagattttttttaagatcggtatctacttgctagattgagctttccaaatattaatacacttcgtctccctctcattttatttcttaccaattttgctttgcgtgtttttctcggcccatggccctaatctgaaattgtggggttttttttggaggtggggagaggggatccgaagtttttgaattcggtaccatttcgtaatttagattggggtgtatctgaatgtgacccgagcgatgcagataacacatttcttcttatgaagattacatcttattggcacagctttatgtatgaaattgagtaattttcgccccacgctataattttaggaaaaaacacccgcacatgtgcagatgtgcttgccttgtttagtgccgtccattcattcgtttttcattttaaaatttaacattaatggtggtaatagatctccttgtaatactactcataatggtgaagtaaaacatgcaatttactccgtttgtaataaatgaaatatttgtgtgttgactatgtaatttatttcctttgtaatagtgaaatagttgtgttggctaggtcagcacattgttgctgcagagctatcttcccggaattgtttgccaatattatgtgcaactgtgtgataaattgaatctgaccattttttgccttgtgccagcttcgtgagaaggctgggttcttgctgttttccccagacttcaaggaatctgcaatttactagcgaaaatgggtgtatcaagacctccaagcacccctgcatcaaagattgagcgcacaccgatgtcgaccccaacccctggtggcagcactagggtcaaggaggagaagatttttgtcacagtgagggtgcgaccattgagcaagaaagaactggccttgaaggatcaggtggcatgggagtgcgatgataaccagacaattttgtacaagggccccccacaggatcgggctgcacccacctcttacactttcggtaggcttttcagtgatctattcatgactgcatatctcaagcaattatgtttgtagtgacactcttgatcaatgacttcatatctcaatcctataagtttgaagttacctcagtagctaaattgactaatttaaattccatcttacccttccagacaaggtgtttggaccagcttcccagacagaagtggtgtatgaagagggagctaaggatgttgctatgtctgcattgacaggcattaatggtaaattaattctcactcagtagtttgaataaagttgaatgatcctttatctactctttattctttaccttcctttgttttgcagccaccatttttgcctatggtcaaaccagcagtggtaagacattcaccatgagaggcgtcacagagagtgctgtaaatgatatatacaggcacatagaaaatgtgagtttttttatacatggagcaacaaaatcatgctatctatattgctttctaaaatgcacataacacataattgtttcttgcttttgttgattgcatagactcctgagagggactttatcatcaagatatctgctatggaaatttacaatgagattgtgaaggatcttctacgacctgagtctaccaatcttcgcttgttagatgatcctgaggtttgtttccagttcgacagagtctatgcactgcccccacatattctcttgcatgccatgattatcctttaataaattgttatggtttgacagaaaggaacaattgtagaaaaactggaagaagaaattgccaaggatagccaacatcttaggcatctaatcagtatttgtgaaggtaactactatctgtatatattgtcttaacttattttttcaagaagaaccagaagaaatgggttgccttatttacttttttttttgttgacgcggtagcctattgcttatgatgtctttatgactgcagaacaaagacaggttggggagactgcactaaatgacaccagttcacgttcccaccagatcattaggctggtatatataaaaataagcctccatgtttatgttagatctttttcatgaaagtgagaaaaataattattgtgcattatctctatccagacagttgagagtaggctccgtgaagtgtcaggatgtgttaaatcttttgtggctaatctggtaagcataacgtcctcattttgcaatggtgtacatgctgtttttttaatctcaataatatgtgttgctttttcacagaattttgttgatcttgctggaagtgaacgagctgcacaaacacatgcagttggcgcaagactgaaagaaggctgccatataaatcgcagcttactgactcttactactgtcatcagaaagctaaggtatgattttctaaagaaagaaagaaaaaactctgggtctattatctcttatctgcaccaatcttgaaagtagtcgctgagttacctcgatgcactcatgggttagtctcagttctaatgttatctgttgatttgtaatgatatcagtatgttaatgatgtatcttatctcctaatgaatttctaaaacatgctaatgagattcatcagatcaaaatattcccaggccactttgtttaagtgggaggcaattgctctgtactctgtcctattgccactatactgtttaatcattctgcatatttagaactaaagtgagttttattaaaatctcatagctgcaacacagttaattgtaagttcttgaatgtgttggctaagtgacattggtatggcaggactaataagcagcattgtgtatttgcagtgtcatgaacatgttaaactagacaatttatttgcagtgtcatgaacacgttaaactagataatttatttgcagtgtcatgctaatacacagtttgagacctcttttctacttagataatttactgcatatttgtatttttaccgtttcttggtttgaacaggaaactataatgaagtatatctttattgggaatattagcagactgactctaaattttcaatgcagctcggataaaagaagtggacacataccctatcgagactcgaagttgacacgcattctccagctttctttgggtggaaatgcaagaacagccatcatctgtaccatgagtccagcgcaaacacatgtagaacaatctagaaatactctattctttgcaacctgtgccaaggaggttacgaataatgcaaaagttaatatggtaagatctgtgactgtgatgcatcatttatttacttatgagaatgcaaatcttcatcccttgggccttggtacgtacaggtggtatcagataagcaattggtgaagcacctacagatggaagttgctagactcgaagctgagctgagaacccctgatcgtgcctcctcttctgagatcattataatggaaagggacaggaagattagacaggtaatgtctatgctcaaggatgaagttcactggaatcatttccattttgtaactgacctaattaagtgaacactgcagatggaaaaagaaatggaggaactcaagaagcaaagagacaatgcacagttgaaacttgaagaattacagaagaagatgggtgataatcagccagtgagtatttgccctttccttgcaaatttacttttctttcaaaggatatcagccagtcagaaccacattcatttactgtcaacctaatctttccgaaacccatgttttcttttagggatggaatccttttgactcaccacaaaggacacggaaatgcctcacatattctggatcactacagccaagtaacaaaatgaagatacggagctcgattagacaatcagccactgctccatttatgttaaagcatgaaattcgcaagcttgagcagctacaacagcagcttgaggttgaggctaaccgagctattgaagtactgcacaaagaagtcgaatgccataaacatggcaatcaagatgcagcagaaactattgctaaactacaggctgaaatcagggggatgcaatctgtcagatctgacagagatgttgacatgatcacagatgaaggaaatggatctgatttgaaagaagaaattagtagacttcatatgcaagacaatgatattgcaaaacttgaggctaaactagaaaatgtacagaggtctattgatagattggtgatgtcacttccaaatgttggcacacaatgtaacgagactacaccaaagtccaacagagcaaagaagaagaagaggatgcttcttccactgggcgtgagcaacataaacagaccaaatctgataagagcaccatgctctcccctctcttctagtaggcctttagagccagaagttgagaatagggctccagagggtgacactgtgtctcatgaaggttcagaaagggctactcctactaagagtgaagacactggagatgtatcatcgcgtgatgaaaccccacgctataggcgatccagctcagtgaacatgaaaaagatgcagaagatgttccaaaatgctgctgaggagaatgttagaaatatccgggcttatgtcactgaactgaaggagagagttgcaaaacttcaataccaaaagcagctgcttgtctgtcaggttatgatcgtttatcttgcacacataagttttgttcatgcaaaggttactttgtttcaccactaaaatatgttttcttgtaatcttactacaggtcttggagttggaatcgaatgaaggcaagacaaatgacatggaagaagattcagaggaaaatgcaggatctctacaggatggtcctgattcatgggacagattatttaaggagcagatgcagcacattatccaactgtgggatctctgtcatgtatcaatcatacacaggacccagttctacttattattcaggggggatagggctgatcagatatatattgaagtcgaagttagaagactgacatggttgcaacagcattttgctgaggtgggcgatgcaagtcctgcagctggtgatgactccacaatttctttagcctcaaggtaaatattagcctttacttctttgagttttacgggctatgttagttaattccagaaaaagaaaatagtgttggaaggtctaaaaaagagtcatgtcccctaggcctttaaaatggatgttgctggaagcaaaaccttgtaatctgttttctcacagtagttttatcctctgtaaaagaacacttactgagaaaccttatatgttgatagtgaagatggagcttagttatctgatagaaaagccttaacatgaatgtttttccgagtcaaatgtttcattagtcataactgatatcgaatcgtgatatataaaccaattatctgatttcatgttgcagtatcaaggcattgaggaatgagcgagaattcctcgcgagaaggatgggctcaaggctgacagaagaagagcgagagcgcctcttcatcaaatggcaggtgcccctggaggcgaagcagcggaagctccagcttgtgaacaggctctggacagaccccaatgaccaagctcacattgatgagagcgccgatatagtggccaggctggttggtttctgtgagggtggtaacatcagcaaggagatgtttgagctcaattttgcagtccctgcaagtaggaagccatggctgatgggttggcagcccatttcaaacatgatcagggagaagacacaactttggtaagcagagatatgcccatcttccttgttaagatgaggtagaaggatcatataatctcataaaaattttggtgctctggaccaaaggtgaagtggctgagcttctgggttggtcaaggccaggattgacagggggtgaattgatgcaagcatggtgccaacatgcttcagtctgtgtagaatcttctcttgaacctgtattcttctttcatcaccagtgtagagagacttggatgttctcatattctttattaagtagtgttaagaaatgattccgttccaaattttgcccccaaattgatgatcaaaagttcgtcttgccatgtggttaaaggctgaatcatttaaagaatgcatagagatatttccactctttctcacaggaacacatggagttcaggaaccaggatctcgcggagttagaaaatattgtggttctcgctgtacaacgaggacctctccttttggcttgtgctatttgttccgctttctggattgttctagcgtctttctagttccagattcttctttcttggcgagtaacttctcgtcagacatcttccttttagttttgttagtcaacctcgtctgcatgagttatcagtgattttg</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049721.1 RefSeq:Os01g0513900]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 1]]
 
[[Category:Chromosome 1]]
 

Latest revision as of 14:26, 20 December 2016

The rice Os01g0513900 was reported as dbs1 in 2005 [1] by researchers from the Japan.

Annotated Information

Gene Symbol

  • Os01g0513900 <=> dbs1


Function

  • dbs1mutation causes a severe defect in DBS1 function but does not completely shut it down. We discuss the leaky phenotype of dbs1 under the restricted functioning of OsNACK.


Mutant

  • DBS1 is involved in the growth and development of organs but not in organ initiation or organogenesis. Positional cloning of DBS1 revealed that it encoded a NACK-type kinesin-like protein (OsNACK), homologous to the essential components of a mitogen-activated protein kinase cascade during plant cytokinesis. A BLAST search indicated that DBS1 was the only gene encoding the OsNACK-type protein in the rice genome, and the dbs1 mutant produced only small amounts of the translatable DBS1 mRNA.


Labs working on this gene

  • Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, 464-8601 Japan


References

  1. The Rice Mutant dwarf bamboo shoot 1: A Leaky Mutant of the NACK-type Kinesin-like Gene Can Initiate Organ Primordia but not Organ Development


Structured Information